Rh7CG328400

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009294
Physical Location & Seq
Forward (+)
36048082 .. 36051555
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG328400.1

Sequence Viewer

Length: 528 bp
ATGGGGAAGGAAGAGGATGAGAGGACTCCTCCCTGGTTGAAACCAATGCTTCGGGCAAAGTATTTCAACTCGTGTTCGATTCATTGTGATTCCAACAAGAGTGAATGCAACCATTTCTGTTTGGATTGTAGAGGCCCTGCTTTGTGCCCTTCCTGTTTGATTCATCACCAAGGTCATCATTATGTTCAGATAAGAAGGTCGTCCTACCATAATGTGGTGAGAGTGAGTGAGATTCAGAGGTACATAGACATTTCGTGCGTGCAGACGTACATCATTAACAGTGCAAAGATTGTGTTTCTGAATGAGAGGCCCCAGCCGAGGCCTGGAAAAGGGGTTACCTACACTTGTGAGATTTGCTGCAGAAGCCTGGTCGATGCCTTTAGGTTCTGCTCATTGGGTTGCAAGGTGATGAACAATCCTAACTCTAGCTTTGTTCAATGCCACATTTTTTTTCTTCTTATGGTTGTTATTCATTGTTCAAGTTCCAAACTGATTCATGGTTTGATGGTTAGAAGTTTCAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

175

Amino Acids

20.15

Weight (kDa)

8.92

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 65 - 136 3.1e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AfaI GTAC 2 cut(s) 242, 269
AfiI CCNNNNNNNGG 4 cut(s) 214, 318, 323, 329
AgsI TTSAA 5 cut(s) 40, 67, 437, 480, 520
AjnI CCWGG 3 cut(s) 32, 322, 366
AluBI AGCT 2 cut(s) 429, 523
AluI AGCT 2 cut(s) 429, 523
AoxI GGCC 3 cut(s) 133, 308, 320
ApeKI GCWGC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 134, 309
AsuHPI GGTGA 3 cut(s) 158, 229, 418
BaeGI GKGCMC 1 cut(s) 149
BauI CACGAG 1 cut(s) 70
BbvI GCAGC 1 cut(s) 344
BccI CCATC 1 cut(s) 499
BciT130I CCWGG 3 cut(s) 34, 324, 368
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 358
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 3 cut(s) 34, 324, 368
BmgT120I GGNCC 2 cut(s) 134, 309
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 3 cut(s) 34, 324, 368
BmsI GCATC 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BsaJI CCNNGG 3 cut(s) 32, 169, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 318, 323, 329
BseBI CCWGG 3 cut(s) 34, 324, 368
BseDI CCNNGG 3 cut(s) 32, 169, 317
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 4 cut(s) 214, 318, 323, 329
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 1 cut(s) 344
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 3 cut(s) 135, 310, 322
BslI CCNNNNNNNGG 4 cut(s) 214, 318, 323, 329
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 3 cut(s) 135, 310, 322
Bsp1286I GDGCHC 1 cut(s) 149
BspANI GGCC 3 cut(s) 135, 310, 322
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 362
BssECI CCNNGG 3 cut(s) 32, 169, 317
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 70
Bst2UI CCWGG 3 cut(s) 34, 324, 368
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNI CCWGG 3 cut(s) 34, 324, 368
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 3 cut(s) 32, 322, 366
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 344
BsuRI GGCC 3 cut(s) 135, 310, 322
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 134, 309
Csp6I GTAC 2 cut(s) 241, 268
CviAII CATG 1 cut(s) 497
CviJI RGCY 7 cut(s) 135, 310, 316, 322, 366, 429, 523
CviKI_1 RGCY 7 cut(s) 135, 310, 316, 322, 366, 429, 523
CviQI GTAC 2 cut(s) 241, 268
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoO109I RGGNCCY 2 cut(s) 134, 309
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 3 cut(s) 32, 322, 366
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 500
FaiI YATR 5 cut(s) 183, 210, 245, 461, 498
FatI CATG 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 358
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 3 cut(s) 135, 310, 322
Hin1II CATG 1 cut(s) 500
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 6 cut(s) 25, 79, 89, 160, 232, 493
HphI GGTGA 3 cut(s) 158, 229, 418
Hpy188I TCNGA 3 cut(s) 189, 237, 300
HpyAV CCTTC 2 cut(s) 159, 189
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 108, 262, 284, 360, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 1 cut(s) 500
LpnPI CCDG 9 cut(s) 19, 46, 150, 166, 309, 326, 336, 353, 380
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 2 cut(s) 23, 446
MhlI GDGCHC 1 cut(s) 149
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 7 cut(s) 7, 15, 39, 125, 231, 300, 312
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 3 cut(s) 34, 324, 368
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 3 cut(s) 34, 324, 368
MwoI GCNNNNNNNGC 1 cut(s) 363
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 1 cut(s) 311
NmeAIII GCCGAG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 5 cut(s) 79, 89, 160, 232, 493
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 32, 322, 366
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 3 cut(s) 32, 322, 366
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 2 cut(s) 134, 309
PstI CTGCAG 1 cut(s) 362
RsaI GTAC 2 cut(s) 242, 269
RsaNI GTAC 2 cut(s) 241, 268
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 358
Sau96I GGNCC 2 cut(s) 134, 309
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 34, 324, 368
SduI GDGCHC 1 cut(s) 149
SetI ASST 9 cut(s) 175, 200, 242, 269, 341, 386, 408, 431, 525
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 322
SspMI CTAG 1 cut(s) 426
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 32, 322, 366
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 77, 372
TfiI GAWTC 5 cut(s) 79, 89, 160, 232, 493
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 286
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 5 cut(s) 71, 152, 425, 461, 485
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 214
XagI CCTNNNNNAGG 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.