FvH4_5g26570

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009294
Physical Location & Seq
Forward (+)
18014730 .. 18017378
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26570.t1

Sequence Viewer

Length: 738 bp
ATGGTGAGTTCGATTGCGATTGGTCGAATGGGGAAGGAAGAGGAGGAGAGGACTCCTCCCTGGCTGAAACCAATGCTTCGGGCAAAGTACTTCAACCCGTGTTCGATTCATTGTGATTCCAACAAGAGTGAATGCAACCATTTCTGTTTGGATTGCAGAGGGCCTGCTTTATGCCCTTCCTGTTTGATTCATCACCAAGGCCATCACTATGTTCAGATAAGAAGATCGTCCTACCATAATGTGGTGAGGGTGAGTGAGATTCAGAGGTACATAGACATTTCGTGCGTGCAGACGTACATCATTAACAGTGCAAAAATTGTGTTTCTGAATGAGAGGCCGCAGCCGAGGCCTGGGAAAGGGGTTACCTACACTTGTGAAATTTGCTGCAGAAGCCTGGTAGATGCCTTTAGGTTCTGCTCATTGGGTTGCAAGCTTGGAGGTATGGAGCGTGGTGACCCCGACCTTTCATTTACAGTGAGGTTTCCAAAAGGAACTCAGATGAATCAAATGTATAACCATATAAGAGGGTCAGAATCAGATGAATCAACAACCCCAAAGAAGATAGCAAAGACAACTCAAATGTTCAACCGTTTGATGATGGGGGAAAGCAATGCAACTTCCTCCGATGATGAGGCCACTGCCAATAATCTCTCTCCCTCCACTCCTCCCCTCTACAATGATCGCAATGCTGGAAGACGCAGACGTAAGGGTATACCTCATCGTGCACCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

246

Amino Acids

27.84

Weight (kDa)

9.14

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 74 - 145 7e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AccI GTMKAC 1 cut(s) 712
AciI CCGC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 3 cut(s) 89, 269, 296
AfiI CCNNNNNNNGG 3 cut(s) 241, 350, 356
AgsI TTSAA 2 cut(s) 94, 586
AjnI CCWGG 3 cut(s) 59, 349, 393
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw21I GWGCWC 1 cut(s) 727
Alw44I GTGCAC 1 cut(s) 723
AoxI GGCC 5 cut(s) 161, 199, 335, 347, 633
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 2 cut(s) 340, 384
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 5 cut(s) 16, 185, 256, 262, 464
BaeGI GKGCMC 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 2 cut(s) 352, 371
BccI CCATC 2 cut(s) 210, 592
BciT130I CCWGG 3 cut(s) 61, 351, 395
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 3 cut(s) 338, 341, 385
BlsI GCNGC 3 cut(s) 339, 342, 386
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 61, 351, 395
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 3 cut(s) 61, 351, 395
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 700
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BsaJI CCNNGG 4 cut(s) 59, 196, 344, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 350, 356
Bse3DI GCAATG 2 cut(s) 616, 691
BseBI CCWGG 3 cut(s) 61, 351, 395
BseDI CCNNGG 4 cut(s) 59, 196, 344, 350
BseLI CCNNNNNNNGG 3 cut(s) 241, 350, 356
BseMI GCAATG 2 cut(s) 616, 691
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 4 cut(s) 45, 56, 59, 654
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 2 cut(s) 352, 371
BsgI GTGCAG 1 cut(s) 308
BshFI GGCC 5 cut(s) 163, 201, 337, 349, 635
BsiHKAI GWGCWC 1 cut(s) 727
BslI CCNNNNNNNGG 3 cut(s) 241, 350, 356
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 5 cut(s) 163, 201, 337, 349, 635
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 2 cut(s) 224, 679
BspACI CCGC 1 cut(s) 338
BspANI GGCC 5 cut(s) 163, 201, 337, 349, 635
BspCNI CTCAG 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 616, 691
BssECI CCNNGG 4 cut(s) 59, 196, 344, 350
BssMI GATC 2 cut(s) 224, 679
BssNAI GTATAC 1 cut(s) 713
BssT1I CCWWGG 1 cut(s) 196
Bst1107I GTATAC 1 cut(s) 713
Bst2UI CCWGG 3 cut(s) 61, 351, 395
Bst4CI ACNGT 3 cut(s) 308, 475, 590
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 165, 287, 431
BstDEI CTNAG 1 cut(s) 495
BstEII GGTNACC 2 cut(s) 361, 452
BstENI CCTNNNNNAGG 1 cut(s) 354
BstKTI GATC 2 cut(s) 227, 682
BstMBI GATC 2 cut(s) 224, 679
BstMWI GCNNNNNNNGC 2 cut(s) 346, 390
BstNI CCWGG 3 cut(s) 61, 351, 395
BstPI GGTNACC 2 cut(s) 361, 452
BstSCI CCNGG 3 cut(s) 59, 349, 393
BstSFI CTRYAG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 2 cut(s) 352, 371
BstV2I GAAGAC 1 cut(s) 700
BstZ17I GTATAC 1 cut(s) 713
BsuRI GGCC 5 cut(s) 163, 201, 337, 349, 635
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 313, 480, 636
Cac8I GCNNGC 3 cut(s) 165, 287, 431
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 705
Csp6I GTAC 3 cut(s) 88, 268, 295
CviJI RGCY 9 cut(s) 64, 163, 201, 337, 343, 349, 393, 433, 635
CviKI_1 RGCY 9 cut(s) 64, 163, 201, 337, 343, 349, 393, 433, 635
CviQI GTAC 3 cut(s) 88, 268, 295
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 226, 681
DpnII GATC 2 cut(s) 224, 679
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 349
Eco91I GGTNACC 2 cut(s) 361, 452
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 161
EcoO65I GGTNACC 2 cut(s) 361, 452
EcoRII CCWGG 3 cut(s) 59, 349, 393
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaiI YATR 9 cut(s) 172, 210, 237, 272, 443, 513, 519, 521, 713
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 338, 341, 385
Fsp4HI GCNGC 3 cut(s) 338, 341, 385
GluI GCNGC 3 cut(s) 338, 341, 385
HaeIII GGCC 5 cut(s) 163, 201, 337, 349, 635
HgaI GACGC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 8 cut(s) 52, 106, 116, 187, 259, 502, 533, 542
HphI GGTGA 5 cut(s) 16, 185, 256, 262, 464
Hpy166II GTNNAC 2 cut(s) 713, 725
Hpy188I TCNGA 7 cut(s) 216, 264, 327, 498, 532, 538, 625
Hpy8I GTNNAC 2 cut(s) 713, 725
HpyAV CCTTC 2 cut(s) 28, 186
HpyCH4III ACNGT 3 cut(s) 308, 475, 590
HpyCH4IV ACGT 2 cut(s) 293, 703
HpyCH4V TGCA 8 cut(s) 135, 156, 289, 311, 387, 429, 614, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 390
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 2 cut(s) 293, 703
Kzo9I GATC 2 cut(s) 224, 679
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 9 cut(s) 46, 73, 177, 193, 336, 363, 380, 407, 675
Lsp1109I GCAGC 2 cut(s) 352, 371
LweI GCATC 1 cut(s) 391
MaeII ACGT 2 cut(s) 293, 703
MaeIII GTNAC 2 cut(s) 361, 452
MalI GATC 2 cut(s) 226, 681
MboI GATC 2 cut(s) 224, 679
MboII GAAGA 4 cut(s) 50, 234, 571, 705
MhlI GDGCHC 1 cut(s) 727
MluCI AATT 2 cut(s) 315, 378
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 144
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 207
MspR9I CCNGG 3 cut(s) 61, 351, 395
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 3 cut(s) 61, 351, 395
MwoI GCNNNNNNNGC 2 cut(s) 346, 390
NdeII GATC 2 cut(s) 224, 679
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 452
PceI AGGCCT 1 cut(s) 349
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 7 cut(s) 106, 116, 187, 259, 502, 533, 542
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 3 cut(s) 339, 342, 386
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 59, 349, 393
PspEI GGTNACC 2 cut(s) 361, 452
PspGI CCWGG 3 cut(s) 59, 349, 393
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 389
RsaI GTAC 3 cut(s) 89, 269, 296
RsaNI GTAC 3 cut(s) 88, 268, 295
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 338, 341, 385
Sau3AI GATC 2 cut(s) 224, 679
Sau96I GGNCC 1 cut(s) 161
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 61, 351, 395
SduI GDGCHC 1 cut(s) 727
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 2 cut(s) 315, 378
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 1 cut(s) 338
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 3 cut(s) 59, 349, 393
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 308, 475, 590
TaiI ACGT 2 cut(s) 296, 706
TaqI TCGA 3 cut(s) 11, 25, 104
TasI AATT 2 cut(s) 315, 378
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 7 cut(s) 106, 116, 187, 259, 502, 533, 542
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 3 cut(s) 313, 480, 643
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 340, 384
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 5 cut(s) 98, 179, 456, 515, 555
TspRI CASTG 3 cut(s) 313, 480, 643
Van91I CCANNNNNTGG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 723
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 712
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.