Rw7G026220

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009294
Physical Location & Seq
Forward (+)
33270792 .. 33272283
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026220.1

Sequence Viewer

Length: 735 bp
ATGTTTTCGATTGCGATTGGTCGAATGGGGAAGGAAGAGGATGAGAGGACTCCTCCCTGGTTGAAACCAATGCTTCGGGCAAAGTATTTCAACTCGTGTTCGATTCATTGTGATTCCAACAAGAGTGAATGCAACCATTTCTGTTTGGATTGTAGAGGCCCTGCTTTGTGCCCTTCCTGTTTGATTCATCACCAAGGTCATCATTATGTTCAGATAAGAAGGTCGTCGTACCATAATGTGGTGAGAGTGAGTGAGATTCAGAGGTACATAGACATTTCGTGCGTGCAGACGTACATCATTAACAGTGCAAAGATTGTGTTTCTGAATGAGAGGCCCCAGCCGAGGCCTGGAAAAGGGGTTACCTACACTTGTGAGATTTGCTGCAGAAGCCTGGTCGATGCCTTTAGGTTCTGCTCATTGGGTTGCAAGCTCGGAGGTATGGAGCGTGGTGACCACGACCTTTCATTTACAGTGAGGTTTCCAAAAGCGACTCAGATGAATCAAATGTATAACCATATAAGGGGGTCAGAATCAGATGAATCAACAACCCCAAAGAAGATTGCAAAGACAACTCAAATGTTCAACCGTTTGATGATGGGGGAAGGCAATGCTACTTCCTCTGATGATGAGGCCACTGCCAATAATCTCTCTCCCTCCACTCCTCCCCTCTACAATGATCGCAATGCTGGAAGACGCAGACGTAAGGGTATACCTCATCGTGCACCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

244

Amino Acids

27.8

Weight (kDa)

9.14

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 73 - 144 7e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccI GTMKAC 1 cut(s) 709
AfaI GTAC 3 cut(s) 230, 266, 293
AfiI CCNNNNNNNGG 5 cut(s) 238, 342, 347, 353, 520
AgsI TTSAA 3 cut(s) 64, 91, 583
AjnI CCWGG 3 cut(s) 56, 346, 390
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw21I GWGCWC 1 cut(s) 724
Alw44I GTGCAC 1 cut(s) 720
AoxI GGCC 4 cut(s) 157, 332, 344, 630
ApaLI GTGCAC 1 cut(s) 720
ApeKI GCWGC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 158, 333
AsuHPI GGTGA 3 cut(s) 182, 253, 461
BaeGI GKGCMC 2 cut(s) 173, 724
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 1 cut(s) 368
BccI CCATC 1 cut(s) 589
BciT130I CCWGG 3 cut(s) 58, 348, 392
BfmI CTRYAG 1 cut(s) 382
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 58, 348, 392
BmgT120I GGNCC 2 cut(s) 158, 333
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 3 cut(s) 58, 348, 392
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 697
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BsaJI CCNNGG 3 cut(s) 56, 193, 341
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 342, 347, 353, 520
Bse3DI GCAATG 2 cut(s) 613, 688
BseBI CCWGG 3 cut(s) 58, 348, 392
BseDI CCNNGG 3 cut(s) 56, 193, 341
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 5 cut(s) 238, 342, 347, 353, 520
BseMI GCAATG 2 cut(s) 613, 688
BseMII CTCAG 1 cut(s) 506
BseRI GAGGAG 2 cut(s) 42, 651
BseSI GKGCMC 2 cut(s) 173, 724
BseXI GCAGC 1 cut(s) 368
BseYI CCCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 4 cut(s) 159, 334, 346, 632
BsiHKAI GWGCWC 1 cut(s) 724
BslI CCNNNNNNNGG 5 cut(s) 238, 342, 347, 353, 520
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 4 cut(s) 159, 334, 346, 632
Bsp1286I GDGCHC 2 cut(s) 173, 724
Bsp143I GATC 1 cut(s) 676
BspANI GGCC 4 cut(s) 159, 334, 346, 632
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 613, 688
BssECI CCNNGG 3 cut(s) 56, 193, 341
BssMI GATC 1 cut(s) 676
BssNAI GTATAC 1 cut(s) 710
BssSI CACGAG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 710
Bst2BI CACGAG 1 cut(s) 94
Bst2UI CCWGG 3 cut(s) 58, 348, 392
Bst4CI ACNGT 3 cut(s) 305, 472, 587
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 284, 428
BstDEI CTNAG 1 cut(s) 492
BstEII GGTNACC 2 cut(s) 358, 449
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 679
BstMBI GATC 1 cut(s) 676
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 3 cut(s) 58, 348, 392
BstPI GGTNACC 2 cut(s) 358, 449
BstSCI CCNGG 3 cut(s) 56, 346, 390
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 2 cut(s) 173, 724
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 697
BstZ17I GTATAC 1 cut(s) 710
BsuRI GGCC 4 cut(s) 159, 334, 346, 632
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 310, 477, 633
Cac8I GCNNGC 2 cut(s) 284, 428
Cfr13I GGNCC 2 cut(s) 158, 333
CseI GACGC 1 cut(s) 702
Csp6I GTAC 3 cut(s) 229, 265, 292
CviJI RGCY 7 cut(s) 159, 334, 340, 346, 390, 430, 632
CviKI_1 RGCY 7 cut(s) 159, 334, 340, 346, 390, 430, 632
CviQI GTAC 3 cut(s) 229, 265, 292
DdeI CTNAG 1 cut(s) 492
DpnI GATC 1 cut(s) 678
DpnII GATC 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 346
Eco91I GGTNACC 2 cut(s) 358, 449
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 158, 333
EcoO65I GGTNACC 2 cut(s) 358, 449
EcoRII CCWGG 3 cut(s) 56, 346, 390
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaiI YATR 8 cut(s) 207, 234, 269, 440, 510, 516, 518, 710
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 382
GluI GCNGC 1 cut(s) 382
GsaI CCCAGC 1 cut(s) 340
HaeIII GGCC 4 cut(s) 159, 334, 346, 632
HgaI GACGC 1 cut(s) 702
HinfI GANTC 9 cut(s) 49, 103, 113, 184, 256, 490, 499, 530, 539
HphI GGTGA 3 cut(s) 182, 253, 461
Hpy166II GTNNAC 2 cut(s) 710, 722
Hpy188I TCNGA 8 cut(s) 213, 261, 324, 434, 495, 529, 535, 622
Hpy8I GTNNAC 2 cut(s) 710, 722
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 25, 183, 213, 596
HpyCH4III ACNGT 3 cut(s) 305, 472, 587
HpyCH4IV ACGT 2 cut(s) 290, 700
HpyCH4V TGCA 7 cut(s) 132, 286, 308, 384, 426, 563, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 2 cut(s) 290, 700
Kzo9I GATC 1 cut(s) 676
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 1 cut(s) 388
MaeII ACGT 2 cut(s) 290, 700
MaeIII GTNAC 2 cut(s) 358, 449
MalI GATC 1 cut(s) 678
MboI GATC 1 cut(s) 676
MboII GAAGA 3 cut(s) 47, 568, 702
MhlI GDGCHC 2 cut(s) 173, 724
MlyI GAGTC 2 cut(s) 43, 484
MmeI TCCRAC 1 cut(s) 141
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 3 cut(s) 58, 348, 392
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 3 cut(s) 58, 348, 392
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 1 cut(s) 676
NlaIV GGNNCC 1 cut(s) 335
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 449
PceI AGGCCT 1 cut(s) 346
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 7 cut(s) 103, 113, 184, 256, 499, 530, 539
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 2 cut(s) 43, 484
PpsI GAGTC 2 cut(s) 43, 484
Psp6I CCWGG 3 cut(s) 56, 346, 390
PspEI GGTNACC 2 cut(s) 358, 449
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 3 cut(s) 56, 346, 390
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 2 cut(s) 158, 333
PstI CTGCAG 1 cut(s) 386
RsaI GTAC 3 cut(s) 230, 266, 293
RsaNI GTAC 3 cut(s) 229, 265, 292
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 1 cut(s) 676
Sau96I GGNCC 2 cut(s) 158, 333
SchI GAGTC 2 cut(s) 43, 484
ScrFI CCNGG 3 cut(s) 58, 348, 392
SduI GDGCHC 2 cut(s) 173, 724
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 346
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 56, 346, 390
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 3 cut(s) 305, 472, 587
TaiI ACGT 2 cut(s) 293, 703
TaqI TCGA 4 cut(s) 8, 22, 101, 396
TfiI GAWTC 7 cut(s) 103, 113, 184, 256, 499, 530, 539
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 3 cut(s) 310, 477, 640
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 1 cut(s) 381
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 5 cut(s) 95, 176, 453, 512, 552
TspRI CASTG 3 cut(s) 310, 477, 640
Van91I CCANNNNNTGG 1 cut(s) 238
VneI GTGCAC 1 cut(s) 720
XagI CCTNNNNNAGG 1 cut(s) 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.