MD06G1001300.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009294
Physical Location & Seq
Reverse (-)
168802 .. 171262
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1001300.v1.1.491

Sequence Viewer

Length: 759 bp
ATGGTGAGTTCAATTGTACCGATAGGGCGAATTGGGAGGGACGAAGATGATTCGATTTGTCCGGCTTGGTTAAAACCAATGCTGAGAGCACACTACTTCGTCCATTGTGAGATTCACGGCGATTCCAACAAGAGTGAATGCAACATGTTCTGCTTGGATTGCATGGGAGATGCTATCTGCCCTTACTGTTTGATCCATCACAAAGATCATCGCGTTGTCCAGATAAGACGGTCGTCCTACCATGATGTGGTGAGAGTGAATGAGATTCAGAAGTACATAGACATATCGTGCGTGCAGACGTACATCATCAACAGCGCAAAGATTGTGTTTTTGAATGAGAGGCCGCAGCCAAGGCCCGGAAAGGGAGTCACCAACACTTGTGAGATTTGCTGCAGAAGCCTCCTCGACTCCTTTAGGTTCTGCTCTTTGGGTTGCAAGCTTGGAGGAATAATGCGGGGTGACCAAGAGCTCACATTTGCAGTGATGAGGACAAAGCACGGCAGGGATGGTTTCTATGGCGGGTCAGAATCAGATGAAGCAACAACTCCAAAGAAGATAACGAAGACAATGCATATGTTCAACCGTCTCATGAATGGCAATGCACTTAATTACGAGCGTGGGACTCGTGGGGGGGAGAGGACTACCTCAAGTTCGGGTGATGAGGAGGGCACTGCCAATCTTTCTCCATCCACTCCTCCCCTTTACAACCACCACAATGCCAGAAGACGTAAGGGTATACCTCATCGCGCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

253

Amino Acids

28.44

Weight (kDa)

8.78

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 76 - 147 2e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 247
AccI GTMKAC 1 cut(s) 736
AccII CGCG 2 cut(s) 213, 747
AciI CCGC 3 cut(s) 344, 454, 519
AclWI GGATC 1 cut(s) 187
AfaI GTAC 3 cut(s) 18, 275, 302
AfiI CCNNNNNNNGG 3 cut(s) 247, 356, 362
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 12, 334, 580
AluBI AGCT 2 cut(s) 439, 469
AluI AGCT 2 cut(s) 439, 469
Alw21I GWGCWC 2 cut(s) 91, 471
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 1 cut(s) 187
AoxI GGCC 2 cut(s) 341, 353
ApeKI GCWGC 2 cut(s) 346, 390
AspLEI GCGC 2 cut(s) 317, 749
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 5 cut(s) 16, 262, 361, 470, 668
BaeGI GKGCMC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 471
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 569, 730
Bbv12I GWGCWC 2 cut(s) 91, 471
BbvI GCAGC 2 cut(s) 358, 377
BccI CCATC 3 cut(s) 204, 500, 694
BceAI ACGGC 2 cut(s) 133, 514
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 391
BisI GCNGC 3 cut(s) 344, 347, 391
BlsI GCNGC 3 cut(s) 345, 348, 392
Bme1390I CCNGG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 569, 730
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 356, 362
Bse3DI GCAATG 1 cut(s) 604
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 511, 686
BseLI CCNNNNNNNGG 3 cut(s) 247, 356, 362
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 392, 677, 684
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 2 cut(s) 358, 377
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 213, 747
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 2 cut(s) 343, 355
BsiEI CGRYCG 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 91, 471
BsiSI CCGG 2 cut(s) 62, 357
BslFI GGGAC 2 cut(s) 53, 634
BslI CCNNNNNNNGG 3 cut(s) 247, 356, 362
BsmAI GTCTC 1 cut(s) 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 53, 634
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 343, 355
Bsp1286I GDGCHC 3 cut(s) 91, 471, 671
Bsp143I GATC 2 cut(s) 192, 205
BspACI CCGC 3 cut(s) 344, 454, 519
BspANI GGCC 2 cut(s) 343, 355
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 2 cut(s) 213, 747
BspHI TCATGA 1 cut(s) 588
BspMAI CTGCAG 1 cut(s) 395
BspPI GGATC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 604
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 2 cut(s) 192, 205
BssNAI GTATAC 1 cut(s) 737
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 737
Bst2BI CACGAG 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 188, 231, 584
BstC8I GCNNGC 2 cut(s) 293, 437
BstDEI CTNAG 1 cut(s) 83
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 2 cut(s) 511, 686
BstFNI CGCG 2 cut(s) 213, 747
BstHHI GCGC 2 cut(s) 317, 749
BstKTI GATC 2 cut(s) 195, 208
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 2 cut(s) 192, 205
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 3 cut(s) 159, 352, 396
BstNSI RCATGY 1 cut(s) 148
BstPAI GACNNNNGTC 1 cut(s) 232
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 2 cut(s) 213, 747
BstV1I GCAGC 2 cut(s) 358, 377
BstV2I GAAGAC 2 cut(s) 569, 730
BstZ17I GTATAC 1 cut(s) 737
BsuRI GGCC 2 cut(s) 343, 355
BtgZI GCGATG 2 cut(s) 194, 728
BtsCI GGATG 2 cut(s) 511, 686
BtsI GCAGTG 2 cut(s) 486, 669
BtsIMutI CAGTG 2 cut(s) 486, 669
Cac8I GCNNGC 2 cut(s) 293, 437
CciI TCATGA 1 cut(s) 588
CfoI GCGC 2 cut(s) 317, 749
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 3 cut(s) 17, 274, 301
CviAII CATG 4 cut(s) 145, 163, 242, 589
CviJI RGCY 7 cut(s) 65, 343, 349, 355, 399, 439, 469
CviKI_1 RGCY 7 cut(s) 65, 343, 349, 355, 399, 439, 469
CviQI GTAC 3 cut(s) 17, 274, 301
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 194, 207
DpnII GATC 2 cut(s) 192, 205
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 469
Eco91I GGTNACC 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 469
EcoO65I GGTNACC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 4 cut(s) 148, 166, 245, 592
FaqI GGGAC 2 cut(s) 53, 634
FatI CATG 4 cut(s) 144, 162, 241, 588
FauI CCCGC 2 cut(s) 447, 512
FauNDI CATATG 1 cut(s) 573
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 344, 347, 391
FokI GGATG 2 cut(s) 518, 673
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 344, 347, 391
GlaI GCGC 2 cut(s) 316, 748
GluI GCNGC 3 cut(s) 344, 347, 391
HaeIII GGCC 2 cut(s) 343, 355
HapII CCGG 2 cut(s) 62, 357
HhaI GCGC 2 cut(s) 317, 749
Hin1II CATG 4 cut(s) 148, 166, 245, 592
Hin6I GCGC 2 cut(s) 315, 747
HinP1I GCGC 2 cut(s) 315, 747
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 8 cut(s) 50, 112, 122, 265, 366, 407, 527, 622
HpaII CCGG 2 cut(s) 62, 357
HphI GGTGA 5 cut(s) 16, 262, 361, 470, 668
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 3 cut(s) 270, 526, 532
Hpy188III TCNNGA 2 cut(s) 220, 589
Hpy8I GTNNAC 1 cut(s) 737
HpyCH4III ACNGT 3 cut(s) 188, 231, 584
HpyCH4IV ACGT 2 cut(s) 299, 727
HpyCH4V TGCA 8 cut(s) 141, 162, 295, 393, 435, 479, 571, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 352, 396
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 299, 727
Hsp92II CATG 4 cut(s) 148, 166, 245, 592
HspAI GCGC 2 cut(s) 315, 747
Kzo9I GATC 2 cut(s) 192, 205
LpnPI CCDG 5 cut(s) 75, 233, 370, 487, 733
Lsp1109I GCAGC 2 cut(s) 358, 377
LweI GCATC 1 cut(s) 160
MaeII ACGT 2 cut(s) 299, 727
MaeIII GTNAC 2 cut(s) 367, 458
MalI GATC 2 cut(s) 194, 207
MboI GATC 2 cut(s) 192, 205
MboII GAAGA 4 cut(s) 56, 565, 574, 735
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 3 cut(s) 91, 471, 671
MluCI AATT 3 cut(s) 12, 30, 607
MlyI GAGTC 3 cut(s) 375, 401, 616
MmeI TCCRAC 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 573
MseI TTAA 2 cut(s) 71, 606
MslI CAYNNNNRTG 1 cut(s) 714
MspI CCGG 2 cut(s) 62, 357
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 143
MvnI CGCG 2 cut(s) 213, 747
MwoI GCNNNNNNNGC 3 cut(s) 159, 352, 396
NciI CCSGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 573
NdeII GATC 2 cut(s) 192, 205
NlaIII CATG 4 cut(s) 148, 166, 245, 592
NmuCI GTSAC 2 cut(s) 367, 458
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 148
PagI TCATGA 1 cut(s) 588
PciI ACATGT 1 cut(s) 144
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 5 cut(s) 50, 112, 122, 265, 527
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 3 cut(s) 345, 348, 392
PleI GAGTC 3 cut(s) 374, 401, 616
PpsI GAGTC 3 cut(s) 374, 401, 616
PscI ACATGT 1 cut(s) 144
PshAI GACNNNNGTC 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 471
PspEI GGTNACC 1 cut(s) 458
PspPI GGNCC 1 cut(s) 354
PstI CTGCAG 1 cut(s) 395
RsaI GTAC 3 cut(s) 18, 275, 302
RsaNI GTAC 3 cut(s) 17, 274, 301
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 2 cut(s) 71, 606
SatI GCNGC 3 cut(s) 344, 347, 391
Sau3AI GATC 2 cut(s) 192, 205
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 3 cut(s) 375, 401, 616
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 3 cut(s) 91, 471, 671
SetI ASST 7 cut(s) 302, 419, 441, 471, 647, 730, 742
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 3 cut(s) 12, 30, 607
SsiI CCGC 3 cut(s) 344, 454, 519
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 3 cut(s) 188, 231, 584
TaiI ACGT 2 cut(s) 302, 730
TaqI TCGA 2 cut(s) 53, 405
TasI AATT 3 cut(s) 12, 30, 607
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 5 cut(s) 50, 112, 122, 265, 527
Tru1I TTAA 2 cut(s) 71, 606
Tru9I TTAA 2 cut(s) 71, 606
TscAI CASTG 2 cut(s) 486, 676
TseFI GTSAC 2 cut(s) 367, 458
TseI GCWGC 2 cut(s) 346, 390
Tsp45I GTSAC 2 cut(s) 367, 458
TspDTI ATGAA 2 cut(s) 549, 605
TspRI CASTG 2 cut(s) 486, 676
Van91I CCANNNNNTGG 1 cut(s) 247
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.