Rh7AG309000

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009294
Physical Location & Seq
Forward (+)
34701310 .. 34704825
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG309000.1

Sequence Viewer

Length: 711 bp
ATGGGGAAGGAAGAGGATGAGAGGACTCCTCCCTGGTTGAAACCAATGCTTCGGGCAAAGTATTTCAACTCGTGTTCGATTCATTGTGATTCCAACAAGAGTGAATGCAACCATTTCTGTTTGGATTGTAGAGGCCCTGCTTTGTGCCCTTCCTGTTTGATTCATCACCAAGGTCATCATTATGTTCAGATAAGAAGGTCGTCCTACCATAATGTGGTGAGAGTGAGTGAGATTCAGAGGTACATAGACATTTCGTGCGTGCAGACGTACATCATTAACAGTGCAAAGATTGTGTTTCTGAATGAGAGGCCCCAGCCGAGGCCTGGAAAAGGGGTTACCTACACTTGTGAGATTTGCTGCAGAAGCCTGGTCGATGCCTTTAGGTTCTGCTCATTGGGTTGCAAGCTCGGAGGTATGGAGCGTGGTGACCACGACCTTTCATTTACAGTGAGGTTTCCAAAAGCGACTCAGATGAATCAAATGTATAACCATATAAGGGGGTCGGAATCAGATGAATCAACAACCCCAAAGAAGATTGCAAAGACAACTCAAATGTTCAACCGTTTGATGATGGGGGAAGGCAATGCTACTTCCTCTGATGATGAGGCCACTGCCAATAATCTCTCTCCCTCCACTCCTCCCCTCTACAATGATCGCAATGCTGGAAGACGCAGACGTAAGGGTATACCTCATCGTGCACCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

236

Amino Acids

26.93

Weight (kDa)

9.06

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 65 - 136 6.5e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 685
AfaI GTAC 2 cut(s) 242, 269
AfiI CCNNNNNNNGG 5 cut(s) 214, 318, 323, 329, 496
AgsI TTSAA 3 cut(s) 40, 67, 559
AjnI CCWGG 3 cut(s) 32, 322, 366
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw21I GWGCWC 1 cut(s) 700
Alw44I GTGCAC 1 cut(s) 696
AoxI GGCC 4 cut(s) 133, 308, 320, 606
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 134, 309
AsuHPI GGTGA 3 cut(s) 158, 229, 437
BaeGI GKGCMC 2 cut(s) 149, 700
BauI CACGAG 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 673
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 1 cut(s) 344
BccI CCATC 1 cut(s) 565
BciT130I CCWGG 3 cut(s) 34, 324, 368
BfmI CTRYAG 1 cut(s) 358
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 3 cut(s) 34, 324, 368
BmgT120I GGNCC 2 cut(s) 134, 309
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 3 cut(s) 34, 324, 368
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 673
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BsaJI CCNNGG 3 cut(s) 32, 169, 317
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 318, 323, 329, 496
Bse3DI GCAATG 2 cut(s) 589, 664
BseBI CCWGG 3 cut(s) 34, 324, 368
BseDI CCNNGG 3 cut(s) 32, 169, 317
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 5 cut(s) 214, 318, 323, 329, 496
BseMI GCAATG 2 cut(s) 589, 664
BseMII CTCAG 1 cut(s) 482
BseRI GAGGAG 2 cut(s) 18, 627
BseSI GKGCMC 2 cut(s) 149, 700
BseXI GCAGC 1 cut(s) 344
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 4 cut(s) 135, 310, 322, 608
BsiHKAI GWGCWC 1 cut(s) 700
BslI CCNNNNNNNGG 5 cut(s) 214, 318, 323, 329, 496
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 4 cut(s) 135, 310, 322, 608
Bsp1286I GDGCHC 2 cut(s) 149, 700
Bsp143I GATC 1 cut(s) 652
BspANI GGCC 4 cut(s) 135, 310, 322, 608
BspCNI CTCAG 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 589, 664
BssECI CCNNGG 3 cut(s) 32, 169, 317
BssMI GATC 1 cut(s) 652
BssNAI GTATAC 1 cut(s) 686
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 169
Bst1107I GTATAC 1 cut(s) 686
Bst2BI CACGAG 1 cut(s) 70
Bst2UI CCWGG 3 cut(s) 34, 324, 368
Bst4CI ACNGT 3 cut(s) 281, 448, 563
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 260, 404
BstDEI CTNAG 1 cut(s) 468
BstEII GGTNACC 2 cut(s) 334, 425
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 655
BstMBI GATC 1 cut(s) 652
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNI CCWGG 3 cut(s) 34, 324, 368
BstPI GGTNACC 2 cut(s) 334, 425
BstSCI CCNGG 3 cut(s) 32, 322, 366
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 2 cut(s) 149, 700
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 673
BstZ17I GTATAC 1 cut(s) 686
BsuRI GGCC 4 cut(s) 135, 310, 322, 608
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 286, 453, 609
Cac8I GCNNGC 2 cut(s) 260, 404
Cfr13I GGNCC 2 cut(s) 134, 309
CseI GACGC 1 cut(s) 678
Csp6I GTAC 2 cut(s) 241, 268
CviJI RGCY 7 cut(s) 135, 310, 316, 322, 366, 406, 608
CviKI_1 RGCY 7 cut(s) 135, 310, 316, 322, 366, 406, 608
CviQI GTAC 2 cut(s) 241, 268
DdeI CTNAG 1 cut(s) 468
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 322
Eco91I GGTNACC 2 cut(s) 334, 425
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoO109I RGGNCCY 2 cut(s) 134, 309
EcoO65I GGTNACC 2 cut(s) 334, 425
EcoRII CCWGG 3 cut(s) 32, 322, 366
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaiI YATR 8 cut(s) 183, 210, 245, 416, 486, 492, 494, 686
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 358
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 4 cut(s) 135, 310, 322, 608
HgaI GACGC 1 cut(s) 678
HinfI GANTC 9 cut(s) 25, 79, 89, 160, 232, 466, 475, 506, 515
HphI GGTGA 3 cut(s) 158, 229, 437
Hpy166II GTNNAC 2 cut(s) 686, 698
Hpy188I TCNGA 8 cut(s) 189, 237, 300, 410, 471, 505, 511, 598
Hpy8I GTNNAC 2 cut(s) 686, 698
HpyAV CCTTC 3 cut(s) 159, 189, 572
HpyCH4III ACNGT 3 cut(s) 281, 448, 563
HpyCH4IV ACGT 2 cut(s) 266, 676
HpyCH4V TGCA 7 cut(s) 108, 262, 284, 360, 402, 539, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 2 cut(s) 266, 676
Kzo9I GATC 1 cut(s) 652
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 364
MaeII ACGT 2 cut(s) 266, 676
MaeIII GTNAC 2 cut(s) 334, 425
MalI GATC 1 cut(s) 654
MboI GATC 1 cut(s) 652
MboII GAAGA 3 cut(s) 23, 544, 678
MhlI GDGCHC 2 cut(s) 149, 700
MlyI GAGTC 2 cut(s) 19, 460
MmeI TCCRAC 2 cut(s) 117, 483
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 3 cut(s) 34, 324, 368
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 3 cut(s) 34, 324, 368
MwoI GCNNNNNNNGC 1 cut(s) 363
NdeII GATC 1 cut(s) 652
NlaIV GGNNCC 1 cut(s) 311
NmeAIII GCCGAG 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 425
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 7 cut(s) 79, 89, 160, 232, 475, 506, 515
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 2 cut(s) 19, 460
PpsI GAGTC 2 cut(s) 19, 460
Psp6I CCWGG 3 cut(s) 32, 322, 366
PspEI GGTNACC 2 cut(s) 334, 425
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 3 cut(s) 32, 322, 366
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 2 cut(s) 134, 309
PstI CTGCAG 1 cut(s) 362
RsaI GTAC 2 cut(s) 242, 269
RsaNI GTAC 2 cut(s) 241, 268
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 2 cut(s) 134, 309
SchI GAGTC 2 cut(s) 19, 460
ScrFI CCNGG 3 cut(s) 34, 324, 368
SduI GDGCHC 2 cut(s) 149, 700
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 322
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 32, 322, 366
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 281, 448, 563
TaiI ACGT 2 cut(s) 269, 679
TaqI TCGA 2 cut(s) 77, 372
TfiI GAWTC 7 cut(s) 79, 89, 160, 232, 475, 506, 515
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 3 cut(s) 286, 453, 616
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 5 cut(s) 71, 152, 429, 488, 528
TspRI CASTG 3 cut(s) 286, 453, 616
Van91I CCANNNNNTGG 1 cut(s) 214
VneI GTGCAC 1 cut(s) 696
XagI CCTNNNNNAGG 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.