RLG00000002466

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009294
Physical Location & Seq
Reverse (-)
34608707 .. 34611388
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002466

Sequence Viewer

Length: 1077 bp
ATGCTACGCCGTCGGTTGCTTGGAGATGACCTCCGTAATAGATCGATGTCAAACCCCTTCGGCGCGCTCTACCAAAACGTGAACCGACGACAACCCAATTCGATCGTTCGATACCCGCGACGGCGTGAGCTCATAGCACTAGAGCCGTCGGTCTGGCAAGGGTATTATATAACTCCACTTCTCTTGCTTTACCCTAGTTTCTTTCCTTCTGCCGTTTTTTTTCAACTCTTTAGTCTACCACTTTATCTTCCACCGCCCATCAAGAAACTGGACAGCTATCTTGAACGAGAACTAAAACAGCAGCAGAGTGCAAAGATTGGGGCCGACTTCAACAGAGCTATGGTGAGTTCGATTGCGATTGGTCGAATGGGGAAGGAAGAGGATGAGAGGACTCCTCCCTGGTTGAAACCAATGCTTCGGGCAAAGTATTTCAACTCGTGTTCGATTCATTGTGATTCCAACAAGAGTGAATGCAACCATTTCTGTTTGGATTGTAGAGGCCCTGCTTTGTGCCCTTCCTGTTTGATTCATCACCAAGGTCATCATTATGTTCAGATAAGGAGGTCGTCCTACCATAATGTGGTGAGAGTAAGTGAGATTCAGAGGTACATAGATATTTCGTGCGTGCAGACGTACATCATTAACAGTGCAAAGATTGTGTTTCTGAATGAGAGGCCACAGCCGAGGCCTGGAAAAGGGGTTACCTACACTTGTGAGATTTGCTGCAGAAGCCTGGTCGATGCCTTTAGGTTCTGCTCATTGGGTTGCAAGCTCGGAGGTATGGAGCGTGGTGACTCCGACCTTTCATTTACAGTGAGGTTTCCAAAAGCGACTCAGATGAATCAAATGTATAACCATATGAGGGGGTCAGAATCAGATGAATCAACAACCCCAAAGAAGATTGCAAAGACAACTCAAATGTTCAACCGTTTGATGATGGGGGAAGGCAATGCCACTTCCTCTGATGATGAGGCCACTGCCAATAATCTCTCTCCCTCCACTCCTCCCCTCTACAATGATCGCAATGCTGGAAGACGCAGACGTAAGGGTATACCTCATCGTGCACCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

359

Amino Acids

41.14

Weight (kDa)

9.58

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 187 - 258 1.4e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 2 cut(s) 235, 1051
AccII CGCG 2 cut(s) 65, 118
AciI CCGC 2 cut(s) 116, 254
AfaI GTAC 2 cut(s) 608, 635
AfiI CCNNNNNNNGG 4 cut(s) 580, 689, 695, 862
AgsI TTSAA 6 cut(s) 224, 284, 331, 406, 433, 925
AjnI CCWGG 3 cut(s) 398, 688, 732
AluBI AGCT 4 cut(s) 130, 276, 338, 772
AluI AGCT 4 cut(s) 130, 276, 338, 772
Alw21I GWGCWC 2 cut(s) 132, 1066
Alw44I GTGCAC 1 cut(s) 1062
AoxI GGCC 5 cut(s) 321, 499, 674, 686, 972
ApaLI GTGCAC 1 cut(s) 1062
ApeKI GCWGC 2 cut(s) 301, 723
AspLEI GCGC 2 cut(s) 65, 67
AspS9I GGNCC 2 cut(s) 321, 500
AsuHPI GGTGA 4 cut(s) 355, 524, 595, 803
BaeGI GKGCMC 2 cut(s) 515, 1066
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 1039
Bbv12I GWGCWC 2 cut(s) 132, 1066
BbvI GCAGC 2 cut(s) 313, 710
BccI CCATC 2 cut(s) 266, 931
BceAI ACGGC 3 cut(s) 130, 137, 197
BciT130I CCWGG 3 cut(s) 400, 690, 734
BfaI CTAG 2 cut(s) 140, 195
BfmI CTRYAG 1 cut(s) 724
BisI GCNGC 2 cut(s) 302, 724
BlsI GCNGC 2 cut(s) 303, 725
Bme1390I CCNGG 3 cut(s) 400, 690, 734
BmgT120I GGNCC 2 cut(s) 321, 500
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 3 cut(s) 400, 690, 734
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 1039
BplI GAGNNNNNCTC 4 cut(s) 15, 47, 379, 411
Bsa29I ATCGAT 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 398, 535, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 580, 689, 695, 862
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 2 cut(s) 955, 1030
BseBI CCWGG 3 cut(s) 400, 690, 734
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 398, 535, 683
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 4 cut(s) 580, 689, 695, 862
BseMI GCAATG 2 cut(s) 955, 1030
BseMII CTCAG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 273
BsePI GCGCGC 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 384, 993
BseSI GKGCMC 2 cut(s) 515, 1066
BseXI GCAGC 2 cut(s) 313, 710
BsgI GTGCAG 1 cut(s) 647
Bsh1236I CGCG 2 cut(s) 65, 118
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 5 cut(s) 323, 501, 676, 688, 974
BshVI ATCGAT 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 132, 1066
BslI CCNNNNNNNGG 4 cut(s) 580, 689, 695, 862
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 5 cut(s) 323, 501, 676, 688, 974
Bsp1286I GDGCHC 3 cut(s) 132, 515, 1066
Bsp143I GATC 3 cut(s) 41, 102, 1018
BspACI CCGC 2 cut(s) 116, 254
BspANI GGCC 5 cut(s) 323, 501, 676, 688, 974
BspCNI CTCAG 1 cut(s) 847
BspDI ATCGAT 1 cut(s) 44
BspFNI CGCG 2 cut(s) 65, 118
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 728
BsrDI GCAATG 2 cut(s) 955, 1030
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 398, 535, 683
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 3 cut(s) 41, 102, 1018
BssNAI GTATAC 1 cut(s) 1052
BssSI CACGAG 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 535
Bst1107I GTATAC 1 cut(s) 1052
Bst2BI CACGAG 1 cut(s) 436
Bst2UI CCWGG 3 cut(s) 400, 690, 734
Bst4CI ACNGT 3 cut(s) 647, 814, 929
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 65, 626, 770
BstDEI CTNAG 1 cut(s) 834
BstEII GGTNACC 1 cut(s) 700
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 2 cut(s) 65, 118
BstHHI GCGC 2 cut(s) 65, 67
BstKTI GATC 3 cut(s) 44, 105, 1021
BstMBI GATC 3 cut(s) 41, 102, 1018
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 729
BstNI CCWGG 3 cut(s) 400, 690, 734
BstPI GGTNACC 1 cut(s) 700
BstSCI CCNGG 3 cut(s) 398, 688, 732
BstSFI CTRYAG 1 cut(s) 724
BstSLI GKGCMC 2 cut(s) 515, 1066
BstUI CGCG 2 cut(s) 65, 118
BstV1I GCAGC 2 cut(s) 313, 710
BstV2I GAAGAC 1 cut(s) 1039
BstZ17I GTATAC 1 cut(s) 1052
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 5 cut(s) 323, 501, 676, 688, 974
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 3 cut(s) 652, 819, 975
Cac8I GCNNGC 3 cut(s) 65, 626, 770
CfoI GCGC 2 cut(s) 65, 67
Cfr13I GGNCC 2 cut(s) 321, 500
ClaI ATCGAT 1 cut(s) 44
CseI GACGC 1 cut(s) 1044
Csp6I GTAC 2 cut(s) 607, 634
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviQI GTAC 2 cut(s) 607, 634
DdeI CTNAG 1 cut(s) 834
DpnI GATC 3 cut(s) 43, 104, 1020
DpnII GATC 3 cut(s) 41, 102, 1018
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoO109I RGGNCCY 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 700
EcoRII CCWGG 3 cut(s) 398, 688, 732
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 535
FauI CCCGC 1 cut(s) 123
FauNDI CATATG 1 cut(s) 858
FblI GTMKAC 2 cut(s) 235, 1051
Fnu4HI GCNGC 2 cut(s) 302, 724
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 302, 724
FspBI CTAG 2 cut(s) 140, 195
GlaI GCGC 2 cut(s) 64, 66
GluI GCNGC 2 cut(s) 302, 724
HaeIII GGCC 5 cut(s) 323, 501, 676, 688, 974
HgaI GACGC 1 cut(s) 1044
HhaI GCGC 2 cut(s) 65, 67
Hin6I GCGC 2 cut(s) 63, 65
HinP1I GCGC 2 cut(s) 63, 65
HphI GGTGA 4 cut(s) 355, 524, 595, 803
Hpy166II GTNNAC 4 cut(s) 82, 236, 1052, 1064
Hpy188I TCNGA 9 cut(s) 555, 603, 666, 776, 799, 837, 871, 877, 964
Hpy188III TCNNGA 2 cut(s) 262, 281
Hpy8I GTNNAC 4 cut(s) 82, 236, 1052, 1064
Hpy99I CGWCG 4 cut(s) 15, 90, 123, 151
HpyAV CCTTC 5 cut(s) 67, 216, 367, 525, 938
HpyCH4III ACNGT 3 cut(s) 647, 814, 929
HpyCH4IV ACGT 3 cut(s) 78, 632, 1042
HpyCH4V TGCA 8 cut(s) 311, 474, 628, 650, 726, 768, 905, 1064
HpyF10VI GCNNNNNNNGC 1 cut(s) 729
HpyF3I CTNAG 1 cut(s) 834
HpySE526I ACGT 3 cut(s) 78, 632, 1042
HspAI GCGC 2 cut(s) 63, 65
Kzo9I GATC 3 cut(s) 41, 102, 1018
LmnI GCTCC 1 cut(s) 784
Lsp1109I GCAGC 2 cut(s) 313, 710
LweI GCATC 1 cut(s) 730
MaeI CTAG 2 cut(s) 140, 195
MaeII ACGT 3 cut(s) 78, 632, 1042
MaeIII GTNAC 2 cut(s) 700, 791
MalI GATC 3 cut(s) 43, 104, 1020
MboI GATC 3 cut(s) 41, 102, 1018
MboII GAAGA 4 cut(s) 239, 389, 910, 1044
MhlI GDGCHC 3 cut(s) 132, 515, 1066
MluCI AATT 1 cut(s) 97
MlyI GAGTC 3 cut(s) 385, 788, 826
MmeI TCCRAC 2 cut(s) 483, 822
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 546
MspR9I CCNGG 3 cut(s) 400, 690, 734
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 3 cut(s) 400, 690, 734
MvnI CGCG 2 cut(s) 65, 118
MwoI GCNNNNNNNGC 1 cut(s) 729
NdeI CATATG 1 cut(s) 858
NdeII GATC 3 cut(s) 41, 102, 1018
NlaIV GGNNCC 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 708
NmuCI GTSAC 1 cut(s) 791
PauI GCGCGC 1 cut(s) 63
PceI AGGCCT 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 7 cut(s) 445, 455, 526, 598, 841, 872, 881
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 2 cut(s) 303, 725
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 3 cut(s) 385, 788, 826
PpsI GAGTC 3 cut(s) 385, 788, 826
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 398, 688, 732
PspEI GGTNACC 1 cut(s) 700
PspGI CCWGG 3 cut(s) 398, 688, 732
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 2 cut(s) 321, 500
PstI CTGCAG 1 cut(s) 728
PteI GCGCGC 1 cut(s) 63
PvuI CGATCG 1 cut(s) 105
RsaI GTAC 2 cut(s) 608, 635
RsaNI GTAC 2 cut(s) 607, 634
RseI CAYNNNNRTG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 2 cut(s) 302, 724
Sau3AI GATC 3 cut(s) 41, 102, 1018
Sau96I GGNCC 2 cut(s) 321, 500
SchI GAGTC 3 cut(s) 385, 788, 826
ScrFI CCNGG 3 cut(s) 400, 690, 734
SduI GDGCHC 3 cut(s) 132, 515, 1066
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 546
Sse9I AATT 1 cut(s) 97
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 2 cut(s) 116, 254
SspMI CTAG 2 cut(s) 140, 195
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 3 cut(s) 398, 688, 732
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 3 cut(s) 647, 814, 929
TaiI ACGT 3 cut(s) 81, 635, 1045
TaqI TCGA 7 cut(s) 44, 101, 109, 350, 364, 443, 738
TaqII GACCGA 1 cut(s) 139
TasI AATT 1 cut(s) 97
TfiI GAWTC 7 cut(s) 445, 455, 526, 598, 841, 872, 881
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 3 cut(s) 652, 819, 982
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 2 cut(s) 301, 723
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 5 cut(s) 437, 518, 795, 854, 894
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 652, 819, 982
Van91I CCANNNNNTGG 1 cut(s) 580
VneI GTGCAC 1 cut(s) 1062
XagI CCTNNNNNAGG 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XmiI GTMKAC 2 cut(s) 235, 1051
XspI CTAG 2 cut(s) 140, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.