Prupe.5G001700_v2.0.a1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009294
Physical Location & Seq
Reverse (-)
297446 .. 299769
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G001700.2

Sequence Viewer

Length: 750 bp
ATGGTGAGTTCAATACCAATAGGGCGATTTGGGAACGAACTGGACGCGATGAGCCCGCCGTGGTTAAAGCCAATGCTGACTGCAAACTACTTCAGGCAATGTGAAATTCACGGGAGGGCCAATAAGAGCGAATGCAACATGTTCTGCTTGGATTGCATGGAAGATGCTATGTGCCCTTACTGTTTAATTCATCACAAGGATCACCGCGTTGTTCAGATAAGGCGGTCCTCATACCATGATGTGGTGAGAGTGAATGAGATTCAGAAGTTCTTGGATATATCGCACGTGCAGACGTACGTCATCAACAGCGCAAAGGTTGTGTTTTTGAATGAGAGGCCGCAGCCAAGGCCTGGAAAAGGGGTCACCAACACTTGTGAGATTTGCTGCAGAAGCCTCCCCGACTCCTTTAGGTTCTGCTCCTTGGGTTGCAAGCTTAAAGGAATAAAGCGCGGTGACGGTGAGCTCACATTTACAGTGCTGAGGGCGAAGCACTACAGGGACGGTTTCTATGGCGGGTCAGAATCGGATGAATCAACAACTCCAAAGAAGATAGCAAGGACGGTGCACATGTTCAGCCGTCTGATGGATGGCAATGCAATGAAATACGAGGGCAGGACTCATGGAGAGGGTACTAGCTCAAGTTCTGGTGATGAGGAAGGCACTACCAATATGTCTCCGTCCACACCTCCCATTTACAACCACAACAATGCCAGAAGACGTAAGGGTATACCTCACCGCGCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

250

Amino Acids

28.2

Weight (kDa)

9.05

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 241, 350
AccI GTMKAC 1 cut(s) 727
AccII CGCG 4 cut(s) 47, 207, 450, 738
AciI CCGC 7 cut(s) 56, 205, 223, 338, 450, 513, 736
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 76
AcvI CACGTG 1 cut(s) 286
AfaI GTAC 2 cut(s) 296, 631
AfiI CCNNNNNNNGG 4 cut(s) 241, 350, 356, 583
AflIII ACRYGT 2 cut(s) 138, 567
AgsI TTSAA 2 cut(s) 12, 328
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 3 cut(s) 433, 463, 636
AluI AGCT 3 cut(s) 433, 463, 636
Alw21I GWGCWC 2 cut(s) 465, 567
Alw26I GTCTC 1 cut(s) 678
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 1 cut(s) 207
AoxI GGCC 3 cut(s) 117, 335, 347
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 2 cut(s) 340, 384
ApoI RAATTY 1 cut(s) 105
AspLEI GCGC 3 cut(s) 311, 450, 740
AspS9I GGNCC 2 cut(s) 117, 225
AsuHPI GGTGA 8 cut(s) 16, 194, 256, 355, 464, 470, 659, 725
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 2 cut(s) 176, 567
BanII GRGCYC 2 cut(s) 56, 465
BbrPI CACGTG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 721
Bbv12I GWGCWC 2 cut(s) 465, 567
BbvCI CCTCAGC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 352, 371
BccI CCATC 2 cut(s) 577, 581
BceAI ACGGC 2 cut(s) 43, 561
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 385, 493
BisI GCNGC 3 cut(s) 338, 341, 385
BlsI GCNGC 3 cut(s) 339, 342, 386
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 117, 225
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 721
Bpu10I CCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 59, 344, 420
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 350, 356, 583
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 3 cut(s) 104, 598, 603
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 59, 344, 420
BseGI GGATG 2 cut(s) 532, 592
BseLI CCNNNNNNNGG 4 cut(s) 241, 350, 356, 583
BseMI GCAATG 3 cut(s) 104, 598, 603
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 45
BseSI GKGCMC 2 cut(s) 176, 567
BseXI GCAGC 2 cut(s) 352, 371
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 4 cut(s) 47, 207, 450, 738
BshFI GGCC 3 cut(s) 119, 337, 349
BsiHKAI GWGCWC 2 cut(s) 465, 567
BsiWI CGTACG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 4 cut(s) 241, 350, 356, 583
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 3 cut(s) 119, 337, 349
Bsp1286I GDGCHC 4 cut(s) 56, 176, 465, 567
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 7 cut(s) 56, 205, 223, 338, 450, 513, 736
BspANI GGCC 3 cut(s) 119, 337, 349
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 4 cut(s) 47, 207, 450, 738
BspMAI CTGCAG 1 cut(s) 389
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 3 cut(s) 104, 598, 603
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 59, 344, 420
BssMI GATC 1 cut(s) 199
BssNAI GTATAC 1 cut(s) 728
BssT1I CCWWGG 2 cut(s) 344, 420
Bst1107I GTATAC 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 5 cut(s) 182, 458, 475, 503, 562
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 56, 431
BstDEI CTNAG 1 cut(s) 479
BstDSI CCRYGG 1 cut(s) 59
BstEII GGTNACC 1 cut(s) 361
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 532, 592
BstFNI CGCG 4 cut(s) 47, 207, 450, 738
BstHHI GCGC 3 cut(s) 311, 450, 740
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 153, 346, 390
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 2 cut(s) 142, 571
BstPAI GACNNNNGTC 1 cut(s) 296
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 385, 493
BstSLI GKGCMC 2 cut(s) 176, 567
BstUI CGCG 4 cut(s) 47, 207, 450, 738
BstV1I GCAGC 2 cut(s) 352, 371
BstV2I GAAGAC 1 cut(s) 721
BstZ17I GTATAC 1 cut(s) 728
BsuRI GGCC 3 cut(s) 119, 337, 349
BtgI CCRYGG 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 2 cut(s) 532, 592
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 2 cut(s) 56, 431
CfoI GCGC 3 cut(s) 311, 450, 740
Cfr13I GGNCC 2 cut(s) 117, 225
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 295, 630
CviAII CATG 5 cut(s) 139, 157, 236, 568, 620
CviQI GTAC 2 cut(s) 295, 630
DdeI CTNAG 1 cut(s) 479
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 2 cut(s) 344, 420
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 2 cut(s) 56, 465
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 76
Eco72I CACGTG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 463
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO65I GGTNACC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 344, 420
EcoT38I GRGCYC 2 cut(s) 56, 465
ErhI CCWWGG 2 cut(s) 344, 420
FaeI CATG 5 cut(s) 142, 160, 239, 571, 623
FaqI GGGAC 1 cut(s) 512
FatI CATG 5 cut(s) 138, 156, 235, 567, 619
FauI CCCGC 2 cut(s) 63, 506
FblI GTMKAC 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 338, 341, 385
FokI GGATG 2 cut(s) 539, 599
FriOI GRGCYC 2 cut(s) 56, 465
Fsp4HI GCNGC 3 cut(s) 338, 341, 385
FspBI CTAG 1 cut(s) 633
GlaI GCGC 3 cut(s) 310, 449, 739
GluI GCNGC 3 cut(s) 338, 341, 385
HaeIII GGCC 3 cut(s) 119, 337, 349
HgaI GACGC 1 cut(s) 53
HhaI GCGC 3 cut(s) 311, 450, 740
Hin1II CATG 5 cut(s) 142, 160, 239, 571, 623
Hin6I GCGC 3 cut(s) 309, 448, 738
HinP1I GCGC 3 cut(s) 309, 448, 738
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 5 cut(s) 259, 401, 521, 530, 616
HphI GGTGA 8 cut(s) 16, 194, 256, 355, 464, 470, 659, 725
Hpy166II GTNNAC 3 cut(s) 565, 681, 728
Hpy188I TCNGA 5 cut(s) 216, 264, 520, 526, 582
Hpy8I GTNNAC 3 cut(s) 565, 681, 728
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 5 cut(s) 182, 458, 475, 503, 562
HpyCH4IV ACGT 4 cut(s) 285, 293, 297, 718
HpyCH4V TGCA 8 cut(s) 83, 135, 156, 289, 387, 429, 565, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 346, 390
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 4 cut(s) 285, 293, 297, 718
Hsp92II CATG 5 cut(s) 142, 160, 239, 571, 623
HspAI GCGC 3 cut(s) 309, 448, 738
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 8 cut(s) 26, 79, 336, 363, 481, 598, 630, 724
Lsp1109I GCAGC 2 cut(s) 352, 371
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 633
MaeII ACGT 4 cut(s) 285, 293, 297, 718
MaeIII GTNAC 2 cut(s) 361, 452
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 173, 559, 726
MhlI GDGCHC 4 cut(s) 56, 176, 465, 567
MluCI AATT 2 cut(s) 105, 186
MlyI GAGTC 2 cut(s) 395, 610
MseI TTAA 3 cut(s) 65, 185, 435
MslI CAYNNNNRTG 1 cut(s) 705
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 4 cut(s) 47, 207, 450, 738
MwoI GCNNNNNNNGC 3 cut(s) 153, 346, 390
NdeII GATC 1 cut(s) 199
NlaIII CATG 5 cut(s) 142, 160, 239, 571, 623
NmuCI GTSAC 2 cut(s) 361, 452
NspI RCATGY 2 cut(s) 142, 571
PceI AGGCCT 1 cut(s) 349
PciI ACATGT 2 cut(s) 138, 567
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 3 cut(s) 259, 521, 530
Pfl23II CGTACG 1 cut(s) 294
PflMI CCANNNNNTGG 2 cut(s) 241, 350
PkrI GCNGC 3 cut(s) 339, 342, 386
PleI GAGTC 2 cut(s) 395, 610
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
PpsI GAGTC 2 cut(s) 395, 610
Ppu21I YACGTR 1 cut(s) 286
PscI ACATGT 2 cut(s) 138, 567
PshAI GACNNNNGTC 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 349
PspCI CACGTG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 361
PspGI CCWGG 1 cut(s) 349
PspLI CGTACG 1 cut(s) 294
PspPI GGNCC 2 cut(s) 117, 225
PstI CTGCAG 1 cut(s) 389
RsaI GTAC 2 cut(s) 296, 631
RsaNI GTAC 2 cut(s) 295, 630
RseI CAYNNNNRTG 1 cut(s) 705
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 3 cut(s) 65, 185, 435
SatI GCNGC 3 cut(s) 338, 341, 385
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 117, 225
SchI GAGTC 2 cut(s) 395, 610
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 4 cut(s) 56, 176, 465, 567
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 2 cut(s) 385, 493
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 2 cut(s) 105, 186
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 7 cut(s) 56, 205, 223, 338, 450, 513, 736
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 2 cut(s) 344, 420
TaaI ACNGT 5 cut(s) 182, 458, 475, 503, 562
TaiI ACGT 4 cut(s) 288, 296, 300, 721
TasI AATT 2 cut(s) 105, 186
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 3 cut(s) 259, 521, 530
Tru1I TTAA 3 cut(s) 65, 185, 435
Tru9I TTAA 3 cut(s) 65, 185, 435
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 2 cut(s) 361, 452
TseI GCWGC 2 cut(s) 340, 384
Tsp45I GTSAC 2 cut(s) 361, 452
TspDTI ATGAA 3 cut(s) 179, 543, 614
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 1 cut(s) 480
Van91I CCANNNNNTGG 2 cut(s) 241, 350
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 225
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 105
XceI RCATGY 2 cut(s) 142, 571
XmiI GTMKAC 1 cut(s) 727
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.