Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009294

Physical Location & Seq

Genomic Coordinates Reverse (-)

163747 .. 165057

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCAGGTGAGTTCAATTGTACCGATAGGGCGAATTGGGAGGGACGAAGATGATTCGATTTGTCCGGCGTGGTTAAAACCAATGCTGAGAGCACGCTACTTCGTCCATTGTGAGATTCACGGCGATTCCAACAAGAGTGAATGCAACATGTTCTGCTTGGATTGCATGGGAGATGCTATCTGCCCTTACTGTTTGATCCATCACAAAGATCATCGCGTTGTCCAGATAAGACGGTCGTCCTACCATGATGTGGTGAGAGTGAATGAGATTCAGAAGTACATAGACATATCGTGCGTGCAGACGTACATCATCAACAGCGCAAAGATTGTGTTTTTGAATGAGAGGCCGCAGCCAAGGCCCGGAAAGGGAGTCACCAACACTTGTGAGATTTGCTGCAGAAGCCTCCTCGACTCCTTTAGGTTCTGCTCTTTGGGTTGCAAGCTTGGAGGAATAATGCGGGGTGACCGAGAGCTCACATTTGCAGTGATGAGGACAAAGCACGGCAGGGATGGTTTCTATGGCGGGTCAGAATCAGATGAATCAACAACTCCAAAGAAGATAACGAAGACAATGCATATGTTCAACCGTCTCATGAATGGAAATGCACTTAATTACGAGCGTGGGAGTCGTGGGGGGGAGAGGACTACCTCAAGTTCGGGTGATGAGGAGGGCACTGCCAATCTTTCTCCATCCACTTCTCCCCTTTACAACCACCACAATGCCAGAAGACGTAAGGGTATACCTCATCGCGCACCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLATZ

Protein Analysis

254

Amino Acids

28.61

Weight (kDa)

8.97

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21000 AT1G21000 AT1G76590
fragaria_vesca	FvH4_5g26570 FvH4_5g26570
malus_domestica	MD00G1059100.v1.1 MD06G1001300.v1.1
prunus_persica	Prupe.5G001700_v2.0.a1 Prupe.5G001700_v2.0.a1
pyrus_communis	pycom06g00130
rosa_chinensis	RchiOBHm_Chr7g0217501
rosa_laevigata	RLG00000002466
rosa_multiflora	Rmu_sc0010645.1_g000006
rosa_roxburghii	Rroxscaffold_3G00241940
rosa_rugosa	Rorug07G0169500 Rorug07G0169600 Rorug07G0169600
rosa_samantha	Rh7AG309000 Rh7BG300100 Rh7CG328400 Rh7DG308400
rosa_wichuraiana	Rw7G026220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	2 cut(s)	216, 750
AciI	CCGC	3 cut(s)	347, 457, 522
AclWI	GGATC	1 cut(s)	190
AfaI	GTAC	3 cut(s)	21, 278, 305
AfiI	CCNNNNNNNGG	3 cut(s)	250, 359, 365
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	15, 337, 583
AluBI	AGCT	2 cut(s)	442, 472
AluI	AGCT	2 cut(s)	442, 472
Alw21I	GWGCWC	2 cut(s)	94, 474
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	2 cut(s)	344, 356
ApeKI	GCWGC	2 cut(s)	349, 393
AspLEI	GCGC	2 cut(s)	320, 752
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	5 cut(s)	19, 265, 364, 473, 671
BaeGI	GKGCMC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	572, 733
Bbv12I	GWGCWC	2 cut(s)	94, 474
BbvI	GCAGC	2 cut(s)	361, 380
BccI	CCATC	3 cut(s)	207, 503, 697
BceAI	ACGGC	2 cut(s)	136, 517
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	394
BisI	GCNGC	3 cut(s)	347, 350, 394
BlsI	GCNGC	3 cut(s)	348, 351, 395
Bme1390I	CCNGG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	163
BoxI	GACNNNNGTC	1 cut(s)	235
BpiI	GAAGAC	2 cut(s)	572, 733
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 359, 365
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	514, 689
BseLI	CCNNNNNNNGG	3 cut(s)	250, 359, 365
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	395, 680
BseSI	GKGCMC	1 cut(s)	674
BseXI	GCAGC	2 cut(s)	361, 380
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	216, 750
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	346, 358
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	94, 474
BsiSI	CCGG	2 cut(s)	65, 360
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	250, 359, 365
BsmAI	GTCTC	1 cut(s)	593
BsmBI	CGTCTC	1 cut(s)	593
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	346, 358
Bsp1286I	GDGCHC	3 cut(s)	94, 474, 674
Bsp143I	GATC	2 cut(s)	195, 208
BspACI	CCGC	3 cut(s)	347, 457, 522
BspANI	GGCC	2 cut(s)	346, 358
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	2 cut(s)	216, 750
BspHI	TCATGA	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	398
BspPI	GGATC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	195, 208
BssNAI	GTATAC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	353
Bst1107I	GTATAC	1 cut(s)	740
Bst4CI	ACNGT	3 cut(s)	191, 234, 587
BstC8I	GCNNGC	3 cut(s)	94, 296, 440
BstDEI	CTNAG	1 cut(s)	86
BstEII	GGTNACC	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	514, 689
BstFNI	CGCG	2 cut(s)	216, 750
BstHHI	GCGC	2 cut(s)	320, 752
BstKTI	GATC	2 cut(s)	198, 211
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	2 cut(s)	195, 208
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 355, 399
BstNSI	RCATGY	1 cut(s)	151
BstPAI	GACNNNNGTC	1 cut(s)	235
BstPI	GGTNACC	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	674
BstUI	CGCG	2 cut(s)	216, 750
BstV1I	GCAGC	2 cut(s)	361, 380
BstV2I	GAAGAC	2 cut(s)	572, 733
BstZ17I	GTATAC	1 cut(s)	740
BsuRI	GGCC	2 cut(s)	346, 358
BtgZI	GCGATG	2 cut(s)	197, 731
BtsCI	GGATG	2 cut(s)	514, 689
BtsI	GCAGTG	2 cut(s)	489, 672
BtsIMutI	CAGTG	2 cut(s)	489, 672
Cac8I	GCNNGC	3 cut(s)	94, 296, 440
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	2 cut(s)	320, 752
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	20, 277, 304
CviAII	CATG	4 cut(s)	148, 166, 245, 592
CviJI	RGCY	6 cut(s)	346, 352, 358, 402, 442, 472
CviKI_1	RGCY	6 cut(s)	346, 352, 358, 402, 442, 472
CviQI	GTAC	3 cut(s)	20, 277, 304
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	197, 210
DpnII	GATC	2 cut(s)	195, 208
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	472
Eco91I	GGTNACC	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	353
EcoT22I	ATGCAT	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	593
FaeI	CATG	4 cut(s)	151, 169, 248, 595
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	147, 165, 244, 591
FauI	CCCGC	2 cut(s)	450, 515
FauNDI	CATATG	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	347, 350, 394
FokI	GGATG	2 cut(s)	521, 676
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	3 cut(s)	347, 350, 394
GlaI	GCGC	2 cut(s)	319, 751
GluI	GCNGC	3 cut(s)	347, 350, 394
HaeIII	GGCC	2 cut(s)	346, 358
HapII	CCGG	2 cut(s)	65, 360
HhaI	GCGC	2 cut(s)	320, 752
Hin1II	CATG	4 cut(s)	151, 169, 248, 595
Hin6I	GCGC	2 cut(s)	318, 750
HinP1I	GCGC	2 cut(s)	318, 750
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	9 cut(s)	53, 115, 125, 268, 369, 410, 530, 539, 625
HpaII	CCGG	2 cut(s)	65, 360
HphI	GGTGA	5 cut(s)	19, 265, 364, 473, 671
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	3 cut(s)	273, 529, 535
Hpy188III	TCNNGA	2 cut(s)	223, 592
Hpy8I	GTNNAC	1 cut(s)	740
HpyCH4III	ACNGT	3 cut(s)	191, 234, 587
HpyCH4IV	ACGT	2 cut(s)	302, 730
HpyCH4V	TGCA	9 cut(s)	4, 144, 165, 298, 396, 438, 482, 574, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 355, 399
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	2 cut(s)	302, 730
Hsp92II	CATG	4 cut(s)	151, 169, 248, 595
HspAI	GCGC	2 cut(s)	318, 750
Kzo9I	GATC	2 cut(s)	195, 208
LpnPI	CCDG	5 cut(s)	78, 236, 373, 490, 736
Lsp1109I	GCAGC	2 cut(s)	361, 380
LweI	GCATC	1 cut(s)	163
MaeII	ACGT	2 cut(s)	302, 730
MaeIII	GTNAC	2 cut(s)	370, 461
MalI	GATC	2 cut(s)	197, 210
MboI	GATC	2 cut(s)	195, 208
MboII	GAAGA	4 cut(s)	59, 568, 577, 738
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	3 cut(s)	94, 474, 674
MluCI	AATT	3 cut(s)	15, 33, 610
MlyI	GAGTC	3 cut(s)	378, 404, 634
MmeI	TCCRAC	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	2 cut(s)	74, 609
MslI	CAYNNNNRTG	1 cut(s)	717
MspI	CCGG	2 cut(s)	65, 360
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	146
MvnI	CGCG	2 cut(s)	216, 750
MwoI	GCNNNNNNNGC	3 cut(s)	162, 355, 399
NciI	CCSGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	2 cut(s)	195, 208
NlaIII	CATG	4 cut(s)	151, 169, 248, 595
NmuCI	GTSAC	2 cut(s)	370, 461
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	1 cut(s)	591
PciI	ACATGT	1 cut(s)	147
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	6 cut(s)	53, 115, 125, 268, 530, 539
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	348, 351, 395
PleI	GAGTC	3 cut(s)	377, 404, 633
PpsI	GAGTC	3 cut(s)	377, 404, 633
PscI	ACATGT	1 cut(s)	147
PshAI	GACNNNNGTC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	21, 278, 305
RsaNI	GTAC	3 cut(s)	20, 277, 304
RseI	CAYNNNNRTG	1 cut(s)	717
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	74, 609
SatI	GCNGC	3 cut(s)	347, 350, 394
Sau3AI	GATC	2 cut(s)	195, 208
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	3 cut(s)	378, 404, 634
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	3 cut(s)	94, 474, 674
SetI	ASST	8 cut(s)	9, 305, 422, 444, 474, 650, 733, 745
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	3 cut(s)	15, 33, 610
SsiI	CCGC	3 cut(s)	347, 457, 522
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	3 cut(s)	191, 234, 587
TaiI	ACGT	2 cut(s)	305, 733
TaqI	TCGA	2 cut(s)	56, 408
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	3 cut(s)	15, 33, 610
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	6 cut(s)	53, 115, 125, 268, 530, 539
Tru1I	TTAA	2 cut(s)	74, 609
Tru9I	TTAA	2 cut(s)	74, 609
TscAI	CASTG	2 cut(s)	489, 679
TseFI	GTSAC	2 cut(s)	370, 461
TseI	GCWGC	2 cut(s)	349, 393
Tsp45I	GTSAC	2 cut(s)	370, 461
TspDTI	ATGAA	2 cut(s)	552, 608
TspRI	CASTG	2 cut(s)	489, 679
Van91I	CCANNNNNTGG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	739
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.