Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Reverse (-)

7476902 .. 7479258

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTCATCTGCAATCATTGCCCGTTTGTGATTCATTTAAAAAAAGACATTGTAAAGCTATGCAATTTCTATATGAAGAAAGGTCTTGCTGTTGTTGCAATATCTTCAAATTCTGTGGTAACTCATCCTCAGGATGGGCCTGAGTTCATGGCAGAGGATGCAAAAGTTTTCAAATACCCATTTCCTTACTTATATGATGAGTCACAAGAGGTTGCAAGAGAATTTGGAGCTGTTTGTACACCTGAGTTTTTCTTGTATAAGAAGGATGGTCGTAGACCATTTGAGCTGGTCTATCATGGTCAATTTGATGATTCCCGGCCTAGCAGTAACTCACCAGTAACCGGGAGGGATCTAAGCCTGGCGATTGATCTTTCCCTTAGCTGTCAACCAATACCATCAAATCAAAAGCCAAGTGTTGGTTGCAGCATAAAGTGGCACCCAGAAACAAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

151

Amino Acids

17.08

Weight (kDa)

6.94

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	2 - 90	2.6e-08	AhpC/TSA family
Redoxin	PF08534	2 - 91	7.1e-07	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	435
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	109, 221
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	3 cut(s)	134, 341, 416
AgsI	TTSAA	2 cut(s)	108, 172
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	58, 230, 286, 381
AluI	AGCT	4 cut(s)	58, 230, 286, 381
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	2 cut(s)	137, 317
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	2 cut(s)	109, 221
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	2 cut(s)	316, 343
AsuHPI	GGTGA	1 cut(s)	324
AxyI	CCTNAGG	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	128, 260, 403
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	2 cut(s)	316, 343
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme1390I	CCNGG	3 cut(s)	316, 343, 359
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	3 cut(s)	316, 343, 359
BmsI	GCATC	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	316, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 341, 416
Bse1I	ACTGG	1 cut(s)	335
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	359
BseGI	GGATG	4 cut(s)	124, 139, 163, 271
BseLI	CCNNNNNNNGG	3 cut(s)	134, 341, 416
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	132, 143, 234
BseNI	ACTGG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	435
BshFI	GGCC	2 cut(s)	139, 319
BshNI	GGYRCC	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	316, 342
BslI	CCNNNNNNNGG	3 cut(s)	134, 341, 416
BsnI	GGCC	2 cut(s)	139, 319
Bsp1407I	TGTACA	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	349, 367
BspANI	GGCC	2 cut(s)	139, 319
BspCNI	CTCAG	3 cut(s)	133, 142, 235
BspHI	TCATGA	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	349, 367
Bst2UI	CCWGG	1 cut(s)	359
BstAPI	GCANNNNNTGC	2 cut(s)	18, 158
BstAUI	TGTACA	1 cut(s)	236
BstDEI	CTNAG	5 cut(s)	129, 141, 243, 353, 377
BstF5I	GGATG	4 cut(s)	124, 139, 163, 271
BstKTI	GATC	2 cut(s)	352, 370
BstMBI	GATC	2 cut(s)	349, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 95, 158
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	314, 341, 357
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	139, 319
BtsCI	GGATG	4 cut(s)	124, 139, 163, 271
CciI	TCATGA	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	237
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviAII	CATG	3 cut(s)	148, 296, 453
CviJI	RGCY	8 cut(s)	58, 139, 230, 286, 319, 357, 381, 409
CviKI_1	RGCY	8 cut(s)	58, 139, 230, 286, 319, 357, 381, 409
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	5 cut(s)	129, 141, 243, 353, 377
DpnI	GATC	2 cut(s)	351, 369
DpnII	GATC	2 cut(s)	349, 367
DraI	TTTAAA	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	3 cut(s)	151, 299, 456
FatI	CATG	3 cut(s)	147, 295, 452
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	424
FokI	GGATG	4 cut(s)	111, 146, 170, 278
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	139, 319
HapII	CCGG	2 cut(s)	316, 342
Hin1II	CATG	3 cut(s)	151, 299, 456
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	31, 200, 311
HpaII	CCGG	2 cut(s)	316, 342
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	3 cut(s)	239, 275, 386
Hpy188III	TCNNGA	2 cut(s)	131, 453
Hpy8I	GTNNAC	3 cut(s)	239, 275, 386
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	12, 63, 98, 161, 215, 423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 95, 158
HpyF3I	CTNAG	5 cut(s)	129, 141, 243, 353, 377
Hsp92II	CATG	3 cut(s)	151, 299, 456
Kzo9I	GATC	2 cut(s)	349, 367
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	9 cut(s)	116, 153, 255, 272, 329, 344, 348, 355, 371
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	4 cut(s)	118, 201, 326, 337
MalI	GATC	2 cut(s)	351, 369
MboI	GATC	2 cut(s)	349, 367
MboII	GAAGA	2 cut(s)	88, 96
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	4 cut(s)	64, 109, 221, 302
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	138, 148, 202, 339
MseI	TTAA	1 cut(s)	38
MspI	CCGG	2 cut(s)	316, 342
MspR9I	CCNGG	3 cut(s)	316, 343, 359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	18, 95, 158
NciI	CCSGG	2 cut(s)	316, 343
NdeII	GATC	2 cut(s)	349, 367
NlaIII	CATG	3 cut(s)	151, 299, 456
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	201
PagI	TCATGA	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	31, 311
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	2 cut(s)	349, 367
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	316, 343, 359
SetI	ASST	7 cut(s)	60, 85, 213, 232, 244, 288, 383
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	4 cut(s)	64, 109, 221, 302
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	314, 341, 357
TasI	AATT	4 cut(s)	64, 109, 221, 302
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	31, 311
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	3 cut(s)	23, 89, 136
Van91I	CCANNNNNTGG	1 cut(s)	416
XapI	RAATTY	2 cut(s)	109, 221
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.