Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Forward (+)

13732699 .. 13735885

Gene Structure 3187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAAGCGCCCTTATTTTGAGAAGCTGATTCTCTCTTCTACTCTCAAAGCCAAACAGCTGAAAATACCAGAAAATTTTGCCAAGAAACACAGAGATGAGTTTTCGACATATGTTACGCTCAGTGTTCCTGGTGGTCATGTTTGGCGTGTAGGATTGAAGAAGGCTGACAATAAGTATTGGTTTCAAGATGGTTGGCAGGATTTCATTGAGCGTTATTCCATCCGCACTGGATACTTTTTGATATTCAGATATGAAGGGAATTCGTCTTTTACTGTTCATATTTATAACCTGACTACCGCTGAGATTAATTATCCACCTAATACTCTCGGTGGTAGTGGAGGGACTGTTTATGGTAACCATTATCAAGTATTTGAAGAAATTGAAGATGAGGACTCAGTTGAAATCTTGGGTTCCTCCCCTTCATCCATTGTTACTAGTTCTATGAGAGACAGGCTCTTTGGGGACAGTGCAAATCAACTGACTCCTGGAAAAAATTATAGTCCTCCATCGCTGCAGAATTTGTTCAATGGTGCTAAGCATAACTGGACTGAAGCTGGGAAGCTTCATACACCGAAGGTTGCTGCATTACAAGAAGGTAATAATTCTACGCAAGATAATGGTACTCAGCATAAGAAGAGTAAAAAGACTGTGGACGAAGTCAAATCGTGTACTCCAGGTGAAGGTACAGAAAGCGTAAAGAAGACTGTCAGAAAAAGGCGGAAACGTGATCCTAATGCGCAGGAGTCATCTGCTCAACATGAACAGGATGTAGAAATCCGTTTCAGATTTTATGAAAGTGCATCTGCAAGGAAGAGAACTGTGACAGCTGAAGAAAGAGAGAGGGCCGTAAATACAGCCAAAACATTTGAGCCGGTTAATCCTTTCTGCAGGGTTGTCCTTCGACCATCATATCTATATAGGGGTTGTATAATGTATTTGCCATCCTGCTTTGCTGAAAAGAATTTAAGTGGGGTTTCAGGATTTATAAAACTTCAATCTGCTGACGGTAAACAGTGGCCTGTTCGATGTCTTTACAGAGGAGGGAGAGCAAAATTAAGTCAGGGATGGTATGAGTTTACGGTGGAGAATAATTTGTTAGAGGGGGATGTTTGTGTGTTTGAGTTGCTCAAGACGAAGGAGATTGTGCTGAAAGTTAATGTATTTCGTGTCCAAGAAGATGCTGGATTTGTAACCCAATCATTTGTGAACCAACCTTCAGGGCAAAATATAATTCAGGCTATACCGCTTAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

418

Amino Acids

47.48

Weight (kDa)

9.23

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	8 - 95	2.1e-17	B3 DNA binding domain
B3	PF02362	298 - 390	1.4e-18	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	285, 986
Acc16I	TGCGCA	1 cut(s)	738
AciI	CCGC	4 cut(s)	223, 297, 718, 1244
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	4 cut(s)	73, 259, 517, 961
AcuI	CTGAAG	3 cut(s)	570, 849, 1200
AfaI	GTAC	3 cut(s)	622, 670, 685
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	7 cut(s)	157, 185, 374, 383, 401, 526, 995
AhlI	ACTAGT	1 cut(s)	434
AjnI	CCWGG	3 cut(s)	127, 484, 673
AluBI	AGCT	5 cut(s)	25, 58, 554, 562, 827
AluI	AGCT	5 cut(s)	25, 58, 554, 562, 827
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	722
AoxI	GGCC	2 cut(s)	843, 1016
ApeKI	GCWGC	2 cut(s)	511, 581
ApoI	RAATTY	4 cut(s)	73, 259, 517, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	9, 739
AspS9I	GGNCC	1 cut(s)	843
AsuHPI	GGTGA	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	498, 568
BccI	CCATC	6 cut(s)	182, 227, 514, 913, 949, 1059
BceAI	ACGGC	1 cut(s)	830
BciT130I	CCWGG	3 cut(s)	129, 486, 675
BciVI	GTATCC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	441
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	2 cut(s)	512, 886
BfoI	RGCGCY	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	512, 582
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	2 cut(s)	513, 583
Bme1390I	CCNGG	3 cut(s)	129, 486, 675
BmgT120I	GGNCC	1 cut(s)	843
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	3 cut(s)	129, 486, 675
BmsI	GCATC	2 cut(s)	809, 1168
BpiI	GAAGAC	1 cut(s)	707
BplI	GAGNNNNNCTC	2 cut(s)	438, 470
BpmI	CTGGAG	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	1112
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	1 cut(s)	871
Bse1I	ACTGG	2 cut(s)	232, 548
BseBI	CCWGG	3 cut(s)	129, 486, 675
BseGI	GGATG	6 cut(s)	219, 422, 772, 941, 1070, 1111
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	4 cut(s)	133, 291, 408, 638
BseNI	ACTGG	2 cut(s)	232, 548
BseRI	GAGGAG	1 cut(s)	1053
BseXI	GCAGC	2 cut(s)	498, 568
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	2 cut(s)	845, 1018
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	2 cut(s)	355, 476
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	355, 476
BsnI	GGCC	2 cut(s)	845, 1018
Bsp143I	GATC	1 cut(s)	727
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	4 cut(s)	223, 297, 718, 1244
BspANI	GGCC	2 cut(s)	845, 1018
BspCNI	CTCAG	4 cut(s)	132, 292, 407, 637
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	2 cut(s)	516, 890
BspPI	GGATC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	871
BsrI	ACTGG	2 cut(s)	232, 548
BssAI	RCCGGY	1 cut(s)	871
BssMI	GATC	1 cut(s)	727
Bst2UI	CCWGG	3 cut(s)	129, 486, 675
Bst4CI	ACNGT	9 cut(s)	274, 346, 467, 649, 706, 820, 1007, 1014, 1081
Bst6I	CTCTTC	3 cut(s)	40, 629, 806
BstDEI	CTNAG	6 cut(s)	119, 300, 394, 534, 624, 1247
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	6 cut(s)	219, 422, 772, 941, 1070, 1111
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	2 cut(s)	9, 739
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	727
BstNI	CCWGG	3 cut(s)	129, 486, 675
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	127, 484, 673
BstSFI	CTRYAG	2 cut(s)	512, 886
BstV1I	GCAGC	2 cut(s)	498, 568
BstV2I	GAAGAC	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	845, 1018
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	6 cut(s)	219, 422, 772, 941, 1070, 1111
BtsIMutI	CAGTG	4 cut(s)	127, 225, 472, 1019
CfoI	GCGC	2 cut(s)	9, 739
Cfr10I	RCCGGY	1 cut(s)	871
Cfr13I	GGNCC	1 cut(s)	843
Csp6I	GTAC	3 cut(s)	621, 669, 684
CviAII	CATG	2 cut(s)	137, 758
CviQI	GTAC	3 cut(s)	621, 669, 684
DdeI	CTNAG	6 cut(s)	119, 300, 394, 534, 624, 1247
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
Eam1104I	CTCTTC	3 cut(s)	40, 629, 806
EarI	CTCTTC	3 cut(s)	40, 629, 806
EciI	GGCGGA	1 cut(s)	733
Eco57I	CTGAAG	3 cut(s)	570, 849, 1200
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	127, 484, 673
FaeI	CATG	2 cut(s)	140, 761
FaqI	GGGAC	2 cut(s)	355, 476
FatI	CATG	2 cut(s)	136, 757
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	512, 582
FokI	GGATG	6 cut(s)	206, 409, 779, 928, 1077, 1118
Fsp4HI	GCNGC	2 cut(s)	512, 582
FspBI	CTAG	1 cut(s)	435
FspI	TGCGCA	1 cut(s)	738
GlaI	GCGC	2 cut(s)	8, 738
GluI	GCNGC	2 cut(s)	512, 582
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	657
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	845, 1018
HapII	CCGG	1 cut(s)	872
HhaI	GCGC	2 cut(s)	9, 739
Hin1II	CATG	2 cut(s)	140, 761
Hin6I	GCGC	2 cut(s)	7, 737
HinP1I	GCGC	2 cut(s)	7, 737
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	4 cut(s)	28, 392, 481, 743
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	5 cut(s)	652, 669, 1010, 1077, 1207
Hpy188I	TCNGA	3 cut(s)	248, 710, 785
Hpy188III	TCNNGA	3 cut(s)	185, 978, 1129
Hpy8I	GTNNAC	5 cut(s)	652, 669, 1010, 1077, 1207
HpyAV	CCTTC	9 cut(s)	154, 248, 429, 568, 587, 674, 908, 1129, 1224
HpyCH4III	ACNGT	9 cut(s)	274, 346, 467, 649, 706, 820, 1007, 1014, 1081
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	6 cut(s)	470, 514, 584, 800, 806, 888
HpyF3I	CTNAG	6 cut(s)	119, 300, 394, 534, 624, 1247
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	2 cut(s)	140, 761
HspAI	GCGC	2 cut(s)	7, 737
Kzo9I	GATC	1 cut(s)	727
Lsp1109I	GCAGC	2 cut(s)	498, 568
LweI	GCATC	2 cut(s)	809, 1168
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	5 cut(s)	112, 353, 430, 820, 1189
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	9 cut(s)	27, 169, 386, 395, 646, 712, 823, 842, 1187
MlyI	GAGTC	3 cut(s)	386, 475, 752
MnlI	CCTC	8 cut(s)	332, 382, 424, 513, 834, 1031, 1034, 1093
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	5 cut(s)	306, 876, 965, 1055, 1155
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	3 cut(s)	58, 299, 827
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	3 cut(s)	129, 486, 675
MvaI	CCWGG	3 cut(s)	129, 486, 675
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	2 cut(s)	140, 761
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	820
NsbI	TGCGCA	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	513, 583
PleI	GAGTC	3 cut(s)	386, 475, 751
PpsI	GAGTC	3 cut(s)	386, 475, 751
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	2 cut(s)	285, 986
Psp6I	CCWGG	3 cut(s)	127, 484, 673
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	3 cut(s)	127, 484, 673
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	843
PstI	CTGCAG	2 cut(s)	516, 890
PsyI	GACNNNGTC	1 cut(s)	656
PvuII	CAGCTG	2 cut(s)	58, 827
RsaI	GTAC	3 cut(s)	622, 670, 685
RsaNI	GTAC	3 cut(s)	621, 669, 684
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	5 cut(s)	306, 876, 965, 1055, 1155
SatI	GCNGC	2 cut(s)	512, 582
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	1 cut(s)	843
SchI	GAGTC	3 cut(s)	386, 475, 752
ScrFI	CCNGG	3 cut(s)	129, 486, 675
SfaNI	GCATC	2 cut(s)	809, 1168
SfcI	CTRYAG	2 cut(s)	512, 886
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	1127
SmoI	CTYRAG	1 cut(s)	1127
SpeI	ACTAGT	1 cut(s)	434
SsiI	CCGC	4 cut(s)	223, 297, 718, 1244
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	127, 484, 673
TaaI	ACNGT	9 cut(s)	274, 346, 467, 649, 706, 820, 1007, 1014, 1081
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	3 cut(s)	104, 901, 1024
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	5 cut(s)	306, 876, 965, 1055, 1155
Tru9I	TTAA	5 cut(s)	306, 876, 965, 1055, 1155
TscAI	CASTG	4 cut(s)	127, 232, 472, 1019
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	2 cut(s)	511, 581
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	8 cut(s)	17, 193, 266, 267, 411, 554, 774, 807
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	4 cut(s)	127, 232, 472, 1019
Tth111I	GACNNNGTC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	4 cut(s)	73, 259, 517, 961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1178
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.