Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Forward (+)

3112026 .. 3116697

Gene Structure 4672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1017900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCCAAATATACCCTTAACTCCGAATCCACACACAGACACAGTTATTGGCGGTTATTGTACCTTCCCAAACTTCAAGTATATCTCTTTAGCCGTACAATTACGGTTGCTCACAACTGAGCTTAAGCGACATACTCATCTATCAGCCATGGCTGTTGCCACAACAGTCACTGTGAGCTCACTATGTGCATCTCCACTGCGCTCACCTCGCACCGTGCCAAACTTTGTGTTCCAATTCGCACCAAAATTCTCGTCTTTCAAATTGGGTTTTGAATCTCTGCAACTCCGGACCACTCTGCCCGCAACGAAGCTTGTGGTTCGAGCCGCTCGAACCGAGTCCAAAGGGGTCTCTCTGGGCTTCCGAGCTCCCAATTTTGAGATTCCGGAGCCACTTACTGGGAAAGTTTGGAAATTGGAAGATTTTGAATCACATCCTGCTTTACTGGTTATGTTTATCTGCAACCACTGCCCATTTGTTAAACACCTGAAAAAAAGTATCGTGAAACTTGCAAATTTCTATATGAAGAAAGGACTAGCAGTTGTTGCAATATCTTCAAATTCTGTAGCTACACATCCACAGGATGGACCACAATTTATGGCAGAAGATGCTAAACTGTTCAAATATCCTTTCCCATATCTATATGATGAGTCACAGGACGTGGCCCGAGATTTTGGAGCAGTTTGCACACCCGAGTTCTTCCTATTTAAAAAGGATGGACGGAGGCCATTTGAACTGGTGTACCATGGCCAGTTTGATGATTCAAGACCTAGTAATAGTGTGTCTGTAACTGGAAGGGACTTAAGCCTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTACCATCGAATCAGAAACCCAGTGTTGGATGCAGCATAAAGTGGCACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

297

Amino Acids

32.95

Weight (kDa)

9.23

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	120 - 239	6.6e-15	AhpC/TSA family
Redoxin	PF08534	120 - 240	1.6e-14	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	882
AccB7I	CCANNNNNTGG	2 cut(s)	395, 581
AccBSI	CCGCTC	1 cut(s)	326
AccIII	TCCGGA	2 cut(s)	285, 382
AciI	CCGC	3 cut(s)	51, 300, 324
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	3 cut(s)	245, 511, 556
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	4 cut(s)	61, 96, 740, 840
AfiI	CCNNNNNNNGG	3 cut(s)	395, 581, 863
AflII	CTTAAG	2 cut(s)	122, 799
AgsI	TTSAA	8 cut(s)	76, 259, 272, 425, 555, 619, 731, 762
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	5 cut(s)	121, 177, 310, 365, 566
AluI	AGCT	5 cut(s)	121, 177, 310, 365, 566
Alw21I	GWGCWC	3 cut(s)	179, 367, 823
Alw26I	GTCTC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	2 cut(s)	663, 689
Aor13HI	TCCGGA	2 cut(s)	285, 382
AoxI	GGCC	3 cut(s)	660, 722, 745
ApeKI	GCWGC	1 cut(s)	870
ApoI	RAATTY	3 cut(s)	245, 511, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	3 cut(s)	288, 584, 661
AsuHPI	GGTGA	1 cut(s)	195
AvaI	CYCGRG	2 cut(s)	663, 689
AvaII	GGWCC	2 cut(s)	288, 584
BaeI	ACNNNNGTAYC	2 cut(s)	722, 755
BalI	TGGCCA	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	882
BanII	GRGCYC	2 cut(s)	179, 367
Bbv12I	GWGCWC	3 cut(s)	179, 367, 823
BbvI	GCAGC	1 cut(s)	882
BccI	CCATC	3 cut(s)	575, 707, 850
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	806
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	3 cut(s)	533, 768, 889
BfmI	CTRYAG	1 cut(s)	561
BfrI	CTTAAG	2 cut(s)	122, 799
BisI	GCNGC	2 cut(s)	324, 871
BlsI	GCNGC	2 cut(s)	325, 872
Bme1390I	CCNGG	1 cut(s)	806
Bme18I	GGWCC	2 cut(s)	288, 584
BmeT110I	CYCGRG	2 cut(s)	663, 689
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	3 cut(s)	288, 584, 661
BmiI	GGNNCC	2 cut(s)	387, 884
BmrFI	CCNGG	1 cut(s)	806
BmrI	ACTGGG	2 cut(s)	405, 852
BmsI	GCATC	3 cut(s)	197, 595, 857
BmuI	ACTGGG	2 cut(s)	405, 852
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	147, 742
BsaWI	WCCGGW	2 cut(s)	285, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 581, 863
Bse1I	ACTGG	7 cut(s)	400, 447, 738, 748, 793, 836, 858
BseAI	TCCGGA	2 cut(s)	285, 382
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	2 cut(s)	147, 742
BseGI	GGATG	5 cut(s)	430, 571, 586, 718, 872
BseLI	CCNNNNNNNGG	3 cut(s)	395, 581, 863
BseMII	CTCAG	2 cut(s)	108, 838
BseNI	ACTGG	7 cut(s)	400, 447, 738, 748, 793, 836, 858
BseXI	GCAGC	1 cut(s)	882
BshFI	GGCC	3 cut(s)	662, 724, 747
BshNI	GGYRCC	1 cut(s)	882
BsiHKAI	GWGCWC	3 cut(s)	179, 367, 823
BsiHKCI	CYCGRG	2 cut(s)	663, 689
BsiSI	CCGG	2 cut(s)	286, 383
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	3 cut(s)	395, 581, 863
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	3 cut(s)	662, 724, 747
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	663, 689
Bsp1286I	GDGCHC	3 cut(s)	179, 367, 823
Bsp13I	TCCGGA	2 cut(s)	285, 382
Bsp19I	CCATGG	2 cut(s)	147, 742
BspACI	CCGC	3 cut(s)	51, 300, 324
BspANI	GGCC	3 cut(s)	662, 724, 747
BspCNI	CTCAG	2 cut(s)	109, 837
BspEI	TCCGGA	2 cut(s)	285, 382
BspLI	GGNNCC	2 cut(s)	387, 884
BspT107I	GGYRCC	1 cut(s)	882
BspTI	CTTAAG	2 cut(s)	122, 799
BspTNI	GGTCTC	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	326
BsrI	ACTGG	7 cut(s)	400, 447, 738, 748, 793, 836, 858
BssECI	CCNNGG	2 cut(s)	147, 742
BssT1I	CCWWGG	2 cut(s)	147, 742
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	6 cut(s)	43, 105, 166, 172, 214, 615
BstAFI	CTTAAG	2 cut(s)	122, 799
BstAPI	GCANNNNNTGC	3 cut(s)	465, 542, 605
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	117, 824
BstDSI	CCRYGG	2 cut(s)	147, 742
BstF5I	GGATG	5 cut(s)	430, 571, 586, 718, 872
BstHHI	GCGC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 465, 542, 605
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	662, 724, 747
BtgI	CCRYGG	2 cut(s)	147, 742
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	5 cut(s)	430, 571, 586, 718, 872
BtsI	GCAGTG	2 cut(s)	194, 463
BtsIMutI	CAGTG	4 cut(s)	168, 194, 463, 865
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	3 cut(s)	288, 584, 661
Csp6I	GTAC	4 cut(s)	60, 95, 739, 839
CviAII	CATG	2 cut(s)	148, 743
CviQI	GTAC	4 cut(s)	60, 95, 739, 839
DdeI	CTNAG	2 cut(s)	117, 824
DraI	TTTAAA	1 cut(s)	706
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	745
Ecl136II	GAGCTC	2 cut(s)	177, 365
Eco130I	CCWWGG	2 cut(s)	147, 742
Eco24I	GRGCYC	2 cut(s)	179, 367
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	288, 584
Eco53kI	GAGCTC	2 cut(s)	177, 365
Eco88I	CYCGRG	2 cut(s)	663, 689
EcoICRI	GAGCTC	2 cut(s)	177, 365
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	2 cut(s)	147, 742
EcoT38I	GRGCYC	2 cut(s)	179, 367
ErhI	CCWWGG	2 cut(s)	147, 742
FaeI	CATG	2 cut(s)	151, 746
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	2 cut(s)	147, 742
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	324, 871
FokI	GGATG	5 cut(s)	417, 558, 593, 725, 879
FriOI	GRGCYC	2 cut(s)	179, 367
Fsp4HI	GCNGC	2 cut(s)	324, 871
FspBI	CTAG	3 cut(s)	533, 768, 889
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	324, 871
HaeIII	GGCC	3 cut(s)	662, 724, 747
HapII	CCGG	2 cut(s)	286, 383
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	151, 746
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	8 cut(s)	25, 272, 335, 379, 425, 647, 758, 847
HpaII	CCGG	2 cut(s)	286, 383
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	3 cut(s)	24, 362, 852
Hpy188III	TCNNGA	4 cut(s)	286, 383, 499, 762
Hpy8I	GTNNAC	1 cut(s)	739
HpyAV	CCTTC	2 cut(s)	73, 786
HpyCH4III	ACNGT	6 cut(s)	43, 105, 166, 172, 214, 615
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	7 cut(s)	188, 280, 459, 509, 545, 684, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 465, 542, 605
HpyF3I	CTNAG	2 cut(s)	117, 824
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	2 cut(s)	151, 746
HspAI	GCGC	1 cut(s)	199
Kpn2I	TCCGGA	2 cut(s)	285, 382
LmnI	GCTCC	3 cut(s)	370, 385, 674
Lsp1109I	GCAGC	1 cut(s)	882
LweI	GCATC	3 cut(s)	197, 595, 857
MaeI	CTAG	3 cut(s)	533, 768, 889
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	3 cut(s)	166, 648, 784
MbiI	CCGCTC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	428, 535, 543, 614, 688
MhlI	GDGCHC	3 cut(s)	179, 367, 823
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	9 cut(s)	98, 233, 245, 260, 370, 410, 511, 556, 590
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	2 cut(s)	344, 656
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	2 cut(s)	216, 714
Mox20I	TGGCCA	1 cut(s)	747
MroI	TCCGGA	2 cut(s)	285, 382
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	5 cut(s)	17, 123, 477, 705, 800
Msp20I	TGGCCA	1 cut(s)	747
MspCI	CTTAAG	2 cut(s)	122, 799
MspI	CCGG	2 cut(s)	286, 383
MspR9I	CCNGG	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	4 cut(s)	207, 465, 542, 605
NcoI	CCATGG	2 cut(s)	147, 742
NlaIII	CATG	2 cut(s)	151, 746
NlaIV	GGNNCC	2 cut(s)	387, 884
NmuCI	GTSAC	2 cut(s)	166, 648
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PfeI	GAWTC	6 cut(s)	25, 272, 379, 425, 758, 847
PflMI	CCANNNNNTGG	2 cut(s)	395, 581
PkrI	GCNGC	2 cut(s)	325, 872
PleI	GAGTC	2 cut(s)	343, 655
PpsI	GAGTC	2 cut(s)	343, 655
Psp124BI	GAGCTC	2 cut(s)	179, 367
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	387, 884
PspPI	GGNCC	3 cut(s)	288, 584, 661
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	4 cut(s)	61, 96, 740, 840
RsaNI	GTAC	4 cut(s)	60, 95, 739, 839
SacI	GAGCTC	2 cut(s)	179, 367
SaqAI	TTAA	5 cut(s)	17, 123, 477, 705, 800
SatI	GCNGC	2 cut(s)	324, 871
Sau96I	GGNCC	3 cut(s)	288, 584, 661
SchI	GAGTC	2 cut(s)	344, 656
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	3 cut(s)	179, 367, 823
SfaNI	GCATC	3 cut(s)	197, 595, 857
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	288, 584
SmlI	CTYRAG	2 cut(s)	122, 799
SmoI	CTYRAG	2 cut(s)	122, 799
Sse9I	AATT	9 cut(s)	98, 233, 245, 260, 370, 410, 511, 556, 590
SsiI	CCGC	3 cut(s)	51, 300, 324
SspMI	CTAG	3 cut(s)	533, 768, 889
SstI	GAGCTC	2 cut(s)	179, 367
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	2 cut(s)	147, 742
TaaI	ACNGT	6 cut(s)	43, 105, 166, 172, 214, 615
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	319, 328, 845
TasI	AATT	9 cut(s)	98, 233, 245, 260, 370, 410, 511, 556, 590
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	6 cut(s)	25, 272, 379, 425, 758, 847
Tru1I	TTAA	5 cut(s)	17, 123, 477, 705, 800
Tru9I	TTAA	5 cut(s)	17, 123, 477, 705, 800
TscAI	CASTG	4 cut(s)	175, 201, 470, 865
TseFI	GTSAC	2 cut(s)	166, 648
TseI	GCWGC	1 cut(s)	870
Tsp45I	GTSAC	2 cut(s)	166, 648
TspDTI	ATGAA	1 cut(s)	536
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	4 cut(s)	175, 201, 470, 865
Van91I	CCANNNNNTGG	2 cut(s)	395, 581
Vha464I	CTTAAG	2 cut(s)	122, 799
VpaK11BI	GGWCC	2 cut(s)	288, 584
XapI	RAATTY	3 cut(s)	245, 511, 556
XspI	CTAG	3 cut(s)	533, 768, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.