Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Reverse (-)

38205403 .. 38209111

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTGTTACTCTCTCCTCAGTCTCAGCCTGCGCGTGTCTGCTTCGTTCACCGCGCAAGGCTGTGTCCCAGTTTTCACCACAAATCTTCAAATTGGGTTCCAATCCTCTGCTTCCGCGGACCACTTTACGGCCCAGAAAGCTTGTCGTTCGAGCTGCTAGAACCGAGTCCAGAGGAGTCTCTCTCGGCTTCAGACCTCCCAATTTTGAGCTTCCAGAGCCCCTTACCGGGAAAGTTTGGAAATTGGAGGATTTAGAATCCCATCCTGCTTTACTGGTTATGTTTATCTGCAACCACTGCCCATTTGTTATACACCTGAAAAAAGCTATTGTGAAACTTACGAATTTTTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCAAATTCTGTAATAACGCACCCACAGGATGGACCAGAATTTATGTCAGAAGAAGCTAAACTTTTCAAGTATCCTTTCCCATATCTATATGATGAGTCACAGGATGTTGCTCGAGAATTTGGAGCAGTTTGCACACCAGAGTTTTTCCTGTTTAAAAAGGATGGACGCAGGCCCTTCGAATTGGTGTACCGTGGCCAGTTTGATGATTCGAGACCTAGTAATAATGTGCCTGTAACTGGAAGGGACTTGAGCCTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTATCATCAGCTCAGAAACCCAGCATTGGATGCAGCATAAACTTGTCACTTATAATTTCTTGGTGTTCTTCTCAGTTCGTCCCCTTCCTGTTTCATTTCTCCCTGAGAGATAACAAGATTATAATCTTTCCTTCCCGTCCTGTTTCATTTCTTTGGATCCTTAAAGCCACAAAAAGCCAGGAAAAATGGTATCTCCGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

290

Amino Acids

32.75

Weight (kDa)

9.51

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	67 - 183	6e-13	AhpC/TSA family
Redoxin	PF08534	67 - 198	6.6e-13	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	722, 791
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	3 cut(s)	35, 55, 118
AciI	CCGC	3 cut(s)	53, 116, 118
AclWI	GGATC	2 cut(s)	820, 833
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	4 cut(s)	343, 388, 422, 500
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	6 cut(s)	129, 227, 228, 413, 620, 695
AgsI	TTSAA	3 cut(s)	91, 387, 451
AjnI	CCWGG	2 cut(s)	636, 846
AluBI	AGCT	6 cut(s)	142, 155, 211, 326, 440, 680
AluI	AGCT	6 cut(s)	142, 155, 211, 326, 440, 680
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	3 cut(s)	28, 184, 589
AlwI	GGATC	2 cut(s)	820, 833
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	3 cut(s)	131, 554, 577
ApeKI	GCWGC	2 cut(s)	155, 702
ApoI	RAATTY	4 cut(s)	343, 388, 422, 500
AspLEI	GCGC	2 cut(s)	35, 57
AspS9I	GGNCC	4 cut(s)	120, 132, 416, 555
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	42, 69
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	120, 416
BalI	TGGCCA	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	825
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	2 cut(s)	142, 714
BccI	CCATC	3 cut(s)	270, 407, 539
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	2 cut(s)	638, 848
BciVI	GTATCC	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	28, 184, 589
BfaI	CTAG	2 cut(s)	159, 600
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	2 cut(s)	156, 703
BlsI	GCNGC	2 cut(s)	157, 704
Bme1390I	CCNGG	3 cut(s)	229, 638, 848
Bme18I	GGWCC	2 cut(s)	120, 416
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	4 cut(s)	120, 132, 416, 555
BmiI	GGNNCC	2 cut(s)	100, 827
BmrFI	CCNGG	3 cut(s)	229, 638, 848
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	689
BmuI	ACTGGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	116, 574
Bsc4I	CCNNNNNNNGG	6 cut(s)	129, 227, 228, 413, 620, 695
Bse1I	ACTGG	5 cut(s)	70, 279, 580, 625, 668
Bse8I	GATNNNNATC	1 cut(s)	791
BseBI	CCWGG	2 cut(s)	638, 848
BseDI	CCNNGG	2 cut(s)	116, 574
BseGI	GGATG	5 cut(s)	262, 418, 493, 550, 704
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	6 cut(s)	129, 227, 228, 413, 620, 695
BseMII	CTCAG	6 cut(s)	33, 39, 670, 695, 755, 764
BseNI	ACTGG	5 cut(s)	70, 279, 580, 625, 668
BseRI	GAGGAG	2 cut(s)	7, 189
BseXI	GCAGC	2 cut(s)	142, 714
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	3 cut(s)	35, 55, 118
BshFI	GGCC	3 cut(s)	133, 556, 579
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	3 cut(s)	52, 641, 734
BslI	CCNNNNNNNGG	6 cut(s)	129, 227, 228, 413, 620, 695
BsmAI	GTCTC	3 cut(s)	28, 184, 589
BsmFI	GGGAC	3 cut(s)	52, 641, 734
BsnI	GGCC	3 cut(s)	133, 556, 579
Bso31I	GGTCTC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	222, 655
Bsp143I	GATC	1 cut(s)	825
BspACI	CCGC	3 cut(s)	53, 116, 118
BspANI	GGCC	3 cut(s)	133, 556, 579
BspCNI	CTCAG	6 cut(s)	32, 38, 669, 694, 754, 765
BspFNI	CGCG	3 cut(s)	35, 55, 118
BspLI	GGNNCC	2 cut(s)	100, 827
BspPI	GGATC	2 cut(s)	820, 833
BspT104I	TTCGAA	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	5 cut(s)	70, 279, 580, 625, 668
BssECI	CCNNGG	2 cut(s)	116, 574
BssMI	GATC	1 cut(s)	825
Bst2UI	CCWGG	2 cut(s)	638, 848
Bst4CI	ACNGT	1 cut(s)	575
BstAPI	GCANNNNNTGC	3 cut(s)	297, 374, 699
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	31, 554
BstDEI	CTNAG	7 cut(s)	19, 25, 656, 681, 741, 773, 870
BstDSI	CCRYGG	2 cut(s)	116, 574
BstF5I	GGATG	5 cut(s)	262, 418, 493, 550, 704
BstFNI	CGCG	3 cut(s)	35, 55, 118
BstHHI	GCGC	2 cut(s)	35, 57
BstKTI	GATC	1 cut(s)	828
BstMAI	GTCTC	3 cut(s)	28, 184, 589
BstMBI	GATC	1 cut(s)	825
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
BstNI	CCWGG	2 cut(s)	638, 848
BstSCI	CCNGG	3 cut(s)	227, 636, 846
BstUI	CGCG	3 cut(s)	35, 55, 118
BstV1I	GCAGC	2 cut(s)	142, 714
BstX2I	RGATCY	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	825
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	133, 556, 579
BtgI	CCRYGG	2 cut(s)	116, 574
BtsCI	GGATG	5 cut(s)	262, 418, 493, 550, 704
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	31, 554
CfoI	GCGC	2 cut(s)	35, 57
Cfr13I	GGNCC	4 cut(s)	120, 132, 416, 555
Cfr42I	CCGCGG	1 cut(s)	119
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	571
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	7 cut(s)	19, 25, 656, 681, 741, 773, 870
DpnI	GATC	1 cut(s)	827
DpnII	GATC	1 cut(s)	825
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	589
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	120, 416
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	636, 846
EcoRV	GATATC	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	222
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	3 cut(s)	52, 641, 734
Fnu4HI	GCNGC	2 cut(s)	156, 703
FokI	GGATG	5 cut(s)	249, 425, 500, 557, 711
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	156, 703
FspBI	CTAG	2 cut(s)	159, 600
GlaI	GCGC	2 cut(s)	34, 56
GluI	GCNGC	2 cut(s)	156, 703
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	3 cut(s)	133, 556, 579
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	2 cut(s)	35, 57
Hin6I	GCGC	2 cut(s)	33, 55
HinP1I	GCGC	2 cut(s)	33, 55
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	5 cut(s)	167, 177, 257, 479, 590
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	42, 69
Hpy166II	GTNNAC	2 cut(s)	50, 571
Hpy188I	TCNGA	3 cut(s)	194, 433, 684
Hpy188III	TCNNGA	4 cut(s)	171, 215, 497, 594
Hpy8I	GTNNAC	2 cut(s)	50, 571
HpyAV	CCTTC	4 cut(s)	568, 618, 763, 810
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	291, 368, 516, 702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
HpyF3I	CTNAG	7 cut(s)	19, 25, 656, 681, 741, 773, 870
HspAI	GCGC	2 cut(s)	33, 55
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	825
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	2 cut(s)	142, 714
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	2 cut(s)	159, 600
MaeIII	GTNAC	4 cut(s)	7, 480, 616, 714
MalI	GATC	1 cut(s)	827
MboI	GATC	1 cut(s)	825
MboII	GAAGA	5 cut(s)	79, 367, 375, 446, 729
MflI	RGATCY	1 cut(s)	825
MhlI	GDGCHC	2 cut(s)	222, 655
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	9 cut(s)	92, 202, 242, 343, 388, 422, 500, 563, 723
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	3 cut(s)	176, 186, 488
MnlI	CCTC	5 cut(s)	28, 117, 167, 207, 241
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	2 cut(s)	537, 831
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	3 cut(s)	229, 638, 848
MvaI	CCWGG	2 cut(s)	638, 848
MvnI	CGCG	3 cut(s)	35, 55, 118
MwoI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	825
NlaIV	GGNNCC	2 cut(s)	100, 827
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	480, 714
NspV	TTCGAA	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	257, 590
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	157, 704
PleI	GAGTC	3 cut(s)	175, 185, 487
PpsI	GAGTC	3 cut(s)	175, 185, 487
PsiI	TTATAA	2 cut(s)	722, 791
Psp6I	CCWGG	2 cut(s)	636, 846
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	2 cut(s)	636, 846
PspN4I	GGNNCC	2 cut(s)	100, 827
PspPI	GGNCC	4 cut(s)	120, 132, 416, 555
PsuI	RGATCY	1 cut(s)	825
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	537, 831
SatI	GCNGC	2 cut(s)	156, 703
Sau3AI	GATC	1 cut(s)	825
Sau96I	GGNCC	4 cut(s)	120, 132, 416, 555
SchI	GAGTC	3 cut(s)	176, 186, 488
ScrFI	CCNGG	3 cut(s)	229, 638, 848
SduI	GDGCHC	2 cut(s)	222, 655
SetI	ASST	9 cut(s)	144, 157, 199, 213, 318, 328, 442, 601, 682
SfaNI	GCATC	1 cut(s)	689
Sfr274I	CTCGAG	1 cut(s)	495
Sfr303I	CCGCGG	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	120, 416
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	495, 631
SmoI	CTYRAG	2 cut(s)	495, 631
Sse9I	AATT	9 cut(s)	92, 202, 242, 343, 388, 422, 500, 563, 723
SsiI	CCGC	3 cut(s)	53, 116, 118
SspMI	CTAG	2 cut(s)	159, 600
StyD4I	CCNGG	3 cut(s)	227, 636, 846
TaaI	ACNGT	1 cut(s)	575
TaqI	TCGA	4 cut(s)	151, 496, 561, 593
TasI	AATT	9 cut(s)	92, 202, 242, 343, 388, 422, 500, 563, 723
TfiI	GAWTC	2 cut(s)	257, 590
Tru1I	TTAA	2 cut(s)	537, 831
Tru9I	TTAA	2 cut(s)	537, 831
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	2 cut(s)	480, 714
TseI	GCWGC	2 cut(s)	155, 702
Tsp45I	GTSAC	2 cut(s)	480, 714
TspDTI	ATGAA	3 cut(s)	368, 752, 804
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	120, 416
XapI	RAATTY	4 cut(s)	343, 388, 422, 500
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	2 cut(s)	159, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.