Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Forward (+)

13725574 .. 13728125

Gene Structure 2552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGAGAACAACATTCAACAATGGCGGTATGGAGGAAAAAAAGGGCCCTACGTTCTTCAAGATCATAAAAACCGGTTTCAACACTGAGGATTTGAGAATCCCACCCAAATTCCGGAGACACCTGTTGAATGAACTCTCCGACAGGGCTACTTTGAATTTAATGGATTCTTCAAATAGTTCATGGACTGTTGATGTGAGCCAAACAGAAGGGGAGATATATTTCAAGAATGGATGGCAGAAGTTTGTAAGAGATAACTCCTTAGGTAACTTTGAATTCTTAGTATTTAGGTATGAGAGCGATATGCAATTTAGCATTGAGATCTTTGAGAGAAATGCGAGTAAGAGGATCACGTTTCCAAATGTCAGAACACACAGACAAGGTATACACACTCAAAGTTGTCAATCCAACAAACTCAAAGAGGTTAAAGAAGAGGAGGAAGATTACCAAGATAACAAAGAAGAAGAAGCTGCCACATTGCACAATTTAGAAGGCCCTGCGTTTACAAGCATTGTTGGACAAAACTTGTATAATTTGGCAGTTCCTACAGACTTTTCTATGAAGTACTTTCCTCTGGGATACTACACCATTGTCCTGAAAAATTCAGAGGCAAGAGAATGGGAAGTAAGCGTTGTGCCTAATGGGAAGGATGCTTCCTGTAATACGGTTAAACTTTCTGCAGGATGGGCTGCTTTTAGACGTGACAACCAAATCAACTCCGGAGATACTTGCACATTTGAGCTTGTGGAAAGCAAAACAATGTTGGTTCACATTGATCCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

261

Amino Acids

30.04

Weight (kDa)

5.67

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 111	2.1e-16	B3 DNA binding domain
B3	PF02362	178 - 258	4e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	385
AccIII	TCCGGA	2 cut(s)	114, 719
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	356, 770
AcsI	RAATTY	4 cut(s)	110, 157, 275, 601
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	8 cut(s)	19, 61, 82, 130, 157, 174, 226, 275
AjiI	CACGTC	1 cut(s)	701
AluBI	AGCT	2 cut(s)	470, 742
AluI	AGCT	2 cut(s)	470, 742
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	356, 770
Aor13HI	TCCGGA	2 cut(s)	114, 719
AoxI	GGCC	2 cut(s)	46, 493
ApaI	GGGCCC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	470, 689
ApoI	RAATTY	4 cut(s)	110, 157, 275, 601
AsiGI	ACCGGT	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	46, 47, 494
AxyI	CCTNAGG	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	457, 676
BccI	CCATC	2 cut(s)	228, 678
BciVI	GTATCC	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	112
BfmI	CTRYAG	2 cut(s)	546, 678
BfuI	GTATCC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	2 cut(s)	471, 690
BlsI	GCNGC	2 cut(s)	472, 691
BmcAI	AGTACT	1 cut(s)	566
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	3 cut(s)	46, 47, 494
BmiI	GGNNCC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	640
BsaWI	WCCGGW	3 cut(s)	74, 114, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	476
BseAI	TCCGGA	2 cut(s)	114, 719
BseGI	GGATG	3 cut(s)	239, 655, 689
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	457, 676
BshFI	GGCC	2 cut(s)	48, 495
BshTI	ACCGGT	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	75, 115, 720
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	48, 495
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp13I	TCCGGA	2 cut(s)	114, 719
Bsp143I	GATC	4 cut(s)	63, 321, 348, 775
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	48, 495
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	2 cut(s)	114, 719
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	2 cut(s)	356, 770
BsrDI	GCAATG	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	4 cut(s)	63, 321, 348, 775
BssNAI	GTATAC	1 cut(s)	386
Bst1107I	GTATAC	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	190, 667
Bst6I	CTCTTC	1 cut(s)	426
BstDEI	CTNAG	4 cut(s)	87, 262, 280, 780
BstF5I	GGATG	3 cut(s)	239, 655, 689
BstKTI	GATC	4 cut(s)	66, 324, 351, 778
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	4 cut(s)	63, 321, 348, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstSFI	CTRYAG	2 cut(s)	546, 678
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	457, 676
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BstZ17I	GTATAC	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	48, 495
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	3 cut(s)	239, 655, 689
BtsIMutI	CAGTG	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	46, 47, 494
Csp6I	GTAC	1 cut(s)	565
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	7 cut(s)	48, 149, 201, 470, 495, 689, 742
CviKI_1	RGCY	7 cut(s)	48, 149, 201, 470, 495, 689, 742
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	4 cut(s)	87, 262, 280, 780
DpnI	GATC	4 cut(s)	65, 323, 350, 777
DpnII	GATC	4 cut(s)	63, 321, 348, 775
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	3 cut(s)	46, 47, 494
EcoRI	GAATTC	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	1 cut(s)	186
FaiI	YATR	9 cut(s)	32, 68, 184, 220, 294, 305, 386, 531, 560
FatI	CATG	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	471, 690
FokI	GGATG	3 cut(s)	246, 662, 696
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	471, 690
GluI	GCNGC	2 cut(s)	471, 690
HaeIII	GGCC	2 cut(s)	48, 495
HapII	CCGG	3 cut(s)	75, 115, 720
Hin1II	CATG	1 cut(s)	186
HinfI	GANTC	2 cut(s)	99, 167
HpaII	CCGG	3 cut(s)	75, 115, 720
Hpy166II	GTNNAC	3 cut(s)	386, 504, 769
Hpy188I	TCNGA	3 cut(s)	142, 368, 607
Hpy188III	TCNNGA	5 cut(s)	61, 115, 226, 595, 720
Hpy8I	GTNNAC	3 cut(s)	386, 504, 769
HpyAV	CCTTC	3 cut(s)	203, 485, 640
HpyCH4III	ACNGT	2 cut(s)	190, 667
HpyCH4IV	ACGT	3 cut(s)	53, 353, 700
HpyCH4V	TGCA	4 cut(s)	307, 481, 680, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	4 cut(s)	87, 262, 280, 780
HpySE526I	ACGT	3 cut(s)	53, 353, 700
Hsp92II	CATG	1 cut(s)	186
Kpn2I	TCCGGA	2 cut(s)	114, 719
Kzo9I	GATC	4 cut(s)	63, 321, 348, 775
Lsp1109I	GCAGC	2 cut(s)	457, 676
LweI	GCATC	1 cut(s)	640
MaeII	ACGT	3 cut(s)	53, 353, 700
MaeIII	GTNAC	2 cut(s)	266, 701
MalI	GATC	4 cut(s)	65, 323, 350, 777
MboI	GATC	4 cut(s)	63, 321, 348, 775
MboII	GAAGA	6 cut(s)	49, 162, 443, 452, 473, 476
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	7 cut(s)	110, 157, 275, 308, 484, 532, 601
MmeI	TCCRAC	3 cut(s)	165, 432, 496
MnlI	CCTC	8 cut(s)	28, 82, 339, 415, 427, 430, 582, 601
MroI	TCCGGA	2 cut(s)	114, 719
MseI	TTAA	3 cut(s)	161, 426, 669
MspI	CCGG	3 cut(s)	75, 115, 720
MwoI	GCNNNNNNNGC	1 cut(s)	686
NdeII	GATC	4 cut(s)	63, 321, 348, 775
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	99, 167
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	472, 691
PspN4I	GGNNCC	1 cut(s)	48
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	46, 47, 494
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	161, 426, 669
SatI	GCNGC	2 cut(s)	471, 690
Sau3AI	GATC	4 cut(s)	63, 321, 348, 775
Sau96I	GGNCC	3 cut(s)	46, 47, 494
ScaI	AGTACT	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	2 cut(s)	546, 678
Sse9I	AATT	7 cut(s)	110, 157, 275, 308, 484, 532, 601
SsiI	CCGC	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	190, 667
TaiI	ACGT	3 cut(s)	56, 356, 703
TasI	AATT	7 cut(s)	110, 157, 275, 308, 484, 532, 601
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	99, 167
Tru1I	TTAA	3 cut(s)	161, 426, 669
Tru9I	TTAA	3 cut(s)	161, 426, 669
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	2 cut(s)	470, 689
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	147, 171, 575
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	4 cut(s)	110, 157, 275, 601
XmiI	GTMKAC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.