Rh6DG211400

AhpC/TSA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002253
Physical Location & Seq
Reverse (-)
37684758 .. 37689181
4424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG211400.1

Sequence Viewer

Length: 834 bp
ATGGCTGTTACTCTCTCCTCAGTCTCAGCCTGCGCGTGTCTGCTTCGTTCACCGCGCAAGGCTGTGTCCCAGTTTTCACCACAAATCTTCAAATTGGGTTCCACTCCTCTGCTTCCGCGGACCACTTTACGGCCCAGAAAGCTTGTCGTTCGAGCTGCCAGAACCGAGTCCAGAGGAGTATCTCTCGGCTTCAGACCTCCCAATTTTGAGCTTCCAGAGCCACTTACCGGGAAAGTTTGGAAATTGGAGGATTTTGAATCCCATCCTGCTTTACTGGTTATGTTTATCTGCAACCACTGCCCATTTGTTATACACCTGAAAAATGCTATTGTGAAACTTACGAATTTTTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCAAATTCTGTAATAACGCACCCACAGGATGGACCAGAATTTATGTCAGAAGAAGCTAAACTTTTCAAGTATCCTTTCCCATATCTATATGATGAGTCACAGGATGTTGCTCGAGAATTTGGAGCAGTTTGCACACCAGAGTTTTTCCTGTTTAAAAAGGATGGACGCAGGCCTTTCGAATTGGTGTACCATGGCCAGTTTGATGATTCGAGACCTAGTAAAAATGTGCCTGTAACTGGAAGGGACTTGAGCCTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTATCATCAGCTCAGAAACCCAGGTACTTCCTTCAGATACTACATTCATTGGTTCTTTATAATTATATCCGCCTTGATTACAGTCTGAAATTCATTACTTCCCCCTCCATTCCCTTTTCTTTTGGCAGCATTGGATGCAGCATAAAGTGGCACCCTGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA Redoxin

Protein Analysis

277

Amino Acids

31.3

Weight (kDa)

9.33

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 67 - 184 2.2e-13 Redoxin
AhpC-TSA PF00578 67 - 183 7.8e-13 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 413
AccII CGCG 3 cut(s) 35, 55, 118
AciI CCGC 4 cut(s) 53, 116, 118, 739
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 5 cut(s) 343, 388, 422, 500, 758
AcuI CTGAAG 2 cut(s) 175, 686
AfaI GTAC 2 cut(s) 572, 695
AfiI CCNNNNNNNGG 4 cut(s) 129, 227, 413, 620
AgsI TTSAA 4 cut(s) 91, 257, 387, 451
AjnI CCWGG 2 cut(s) 636, 689
AluBI AGCT 5 cut(s) 142, 155, 211, 440, 680
AluI AGCT 5 cut(s) 142, 155, 211, 440, 680
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 2 cut(s) 28, 589
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 3 cut(s) 131, 554, 577
ApeKI GCWGC 3 cut(s) 155, 795, 807
ApoI RAATTY 5 cut(s) 343, 388, 422, 500, 758
AspLEI GCGC 2 cut(s) 35, 57
AspS9I GGNCC 3 cut(s) 120, 132, 416
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 42, 69
AsuII TTCGAA 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 2 cut(s) 120, 416
BalI TGGCCA 1 cut(s) 579
BanI GGYRCC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 3 cut(s) 142, 807, 819
BccI CCATC 3 cut(s) 270, 407, 539
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 2 cut(s) 638, 691
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 28, 589
BfaI CTAG 1 cut(s) 600
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 3 cut(s) 156, 796, 808
BlsI GCNGC 3 cut(s) 157, 797, 809
Bme1390I CCNGG 3 cut(s) 229, 638, 691
Bme18I GGWCC 2 cut(s) 120, 416
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 3 cut(s) 120, 132, 416
BmiI GGNNCC 2 cut(s) 100, 821
BmrFI CCNGG 3 cut(s) 229, 638, 691
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 794
BmuI ACTGGG 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 168, 200
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 3 cut(s) 116, 574, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 227, 413, 620
Bse1I ACTGG 5 cut(s) 70, 279, 580, 625, 668
BseBI CCWGG 2 cut(s) 638, 691
BseDI CCNNGG 3 cut(s) 116, 574, 689
BseGI GGATG 5 cut(s) 262, 418, 493, 550, 809
BseLI CCNNNNNNNGG 4 cut(s) 129, 227, 413, 620
BseMII CTCAG 5 cut(s) 33, 39, 670, 695, 816
BseNI ACTGG 5 cut(s) 70, 279, 580, 625, 668
BseRI GAGGAG 3 cut(s) 7, 96, 189
BseXI GCAGC 3 cut(s) 142, 807, 819
Bsh1236I CGCG 3 cut(s) 35, 55, 118
BshFI GGCC 3 cut(s) 133, 556, 579
BshNI GGYRCC 1 cut(s) 819
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 52, 641
BslI CCNNNNNNNGG 4 cut(s) 129, 227, 413, 620
BsmAI GTCTC 2 cut(s) 28, 589
BsmFI GGGAC 2 cut(s) 52, 641
BsnI GGCC 3 cut(s) 133, 556, 579
Bso31I GGTCTC 1 cut(s) 589
BsoBI CYCGRG 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 655
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 4 cut(s) 53, 116, 118, 739
BspANI GGCC 3 cut(s) 133, 556, 579
BspCNI CTCAG 5 cut(s) 32, 38, 669, 694, 817
BspFNI CGCG 3 cut(s) 35, 55, 118
BspLI GGNNCC 2 cut(s) 100, 821
BspT104I TTCGAA 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 819
BspTNI GGTCTC 1 cut(s) 589
BsrI ACTGG 5 cut(s) 70, 279, 580, 625, 668
BssECI CCNNGG 3 cut(s) 116, 574, 689
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 2 cut(s) 638, 691
Bst4CI ACNGT 1 cut(s) 752
BstAPI GCANNNNNTGC 3 cut(s) 297, 374, 804
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 2 cut(s) 31, 554
BstDEI CTNAG 5 cut(s) 19, 25, 656, 681, 825
BstDSI CCRYGG 2 cut(s) 116, 574
BstF5I GGATG 5 cut(s) 262, 418, 493, 550, 809
BstFNI CGCG 3 cut(s) 35, 55, 118
BstHHI GCGC 2 cut(s) 35, 57
BstMAI GTCTC 2 cut(s) 28, 589
BstMWI GCNNNNNNNGC 5 cut(s) 139, 217, 297, 374, 804
BstNI CCWGG 2 cut(s) 638, 691
BstSCI CCNGG 3 cut(s) 227, 636, 689
BstUI CGCG 3 cut(s) 35, 55, 118
BstV1I GCAGC 3 cut(s) 142, 807, 819
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 3 cut(s) 133, 556, 579
BtgI CCRYGG 2 cut(s) 116, 574
BtsCI GGATG 5 cut(s) 262, 418, 493, 550, 809
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 31, 554
CfoI GCGC 2 cut(s) 35, 57
Cfr13I GGNCC 3 cut(s) 120, 132, 416
Cfr42I CCGCGG 1 cut(s) 119
CseI GACGC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 571, 694
CviAII CATG 1 cut(s) 575
CviQI GTAC 2 cut(s) 571, 694
DdeI CTNAG 5 cut(s) 19, 25, 656, 681, 825
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 577
EciI GGCGGA 1 cut(s) 728
Eco130I CCWWGG 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 556
Eco31I GGTCTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 120, 416
Eco57I CTGAAG 2 cut(s) 175, 686
Eco88I CYCGRG 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 636, 689
EcoRV GATATC 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 1 cut(s) 578
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 52, 641
FatI CATG 1 cut(s) 574
Fnu4HI GCNGC 3 cut(s) 156, 796, 808
FokI GGATG 5 cut(s) 249, 425, 500, 557, 816
Fsp4HI GCNGC 3 cut(s) 156, 796, 808
FspBI CTAG 1 cut(s) 600
GlaI GCGC 2 cut(s) 34, 56
GluI GCNGC 3 cut(s) 156, 796, 808
HaeIII GGCC 3 cut(s) 133, 556, 579
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 558
HhaI GCGC 2 cut(s) 35, 57
Hin1II CATG 1 cut(s) 578
Hin6I GCGC 2 cut(s) 33, 55
HinP1I GCGC 2 cut(s) 33, 55
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 167, 257, 479, 590
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 42, 69
Hpy166II GTNNAC 2 cut(s) 50, 571
Hpy188I TCNGA 5 cut(s) 194, 433, 684, 705, 756
Hpy188III TCNNGA 4 cut(s) 171, 215, 497, 594
Hpy8I GTNNAC 2 cut(s) 50, 571
HpyAV CCTTC 2 cut(s) 618, 710
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4V TGCA 4 cut(s) 291, 368, 516, 807
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 217, 297, 374, 804
HpyF3I CTNAG 5 cut(s) 19, 25, 656, 681, 825
Hsp92II CATG 1 cut(s) 578
HspAI GCGC 2 cut(s) 33, 55
KspI CCGCGG 1 cut(s) 119
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 3 cut(s) 142, 807, 819
LweI GCATC 1 cut(s) 794
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 3 cut(s) 7, 480, 616
MboII GAAGA 4 cut(s) 79, 367, 375, 446
MhlI GDGCHC 1 cut(s) 655
MlsI TGGCCA 1 cut(s) 579
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 2 cut(s) 176, 488
MnlI CCTC 6 cut(s) 28, 117, 167, 207, 241, 784
Mox20I TGGCCA 1 cut(s) 579
MscI TGGCCA 1 cut(s) 579
MseI TTAA 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 229, 638, 691
MvaI CCWGG 2 cut(s) 638, 691
MvnI CGCG 3 cut(s) 35, 55, 118
MwoI GCNNNNNNNGC 5 cut(s) 139, 217, 297, 374, 804
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 574
NlaIII CATG 1 cut(s) 578
NlaIV GGNNCC 2 cut(s) 100, 821
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 480
NspV TTCGAA 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 495
PceI AGGCCT 1 cut(s) 556
PfeI GAWTC 2 cut(s) 257, 590
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 157, 797, 809
PleI GAGTC 2 cut(s) 175, 487
PpsI GAGTC 2 cut(s) 175, 487
PsiI TTATAA 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 636, 689
PspGI CCWGG 2 cut(s) 636, 689
PspN4I GGNNCC 2 cut(s) 100, 821
PspPI GGNCC 3 cut(s) 120, 132, 416
RsaI GTAC 2 cut(s) 572, 695
RsaNI GTAC 2 cut(s) 571, 694
SacII CCGCGG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 156, 796, 808
Sau96I GGNCC 3 cut(s) 120, 132, 416
SchI GAGTC 2 cut(s) 176, 488
ScrFI CCNGG 3 cut(s) 229, 638, 691
SduI GDGCHC 1 cut(s) 655
SetI ASST 9 cut(s) 144, 157, 199, 213, 318, 442, 601, 682, 695
SfaNI GCATC 1 cut(s) 794
Sfr274I CTCGAG 1 cut(s) 495
Sfr303I CCGCGG 1 cut(s) 119
SfuI TTCGAA 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 119
SinI GGWCC 2 cut(s) 120, 416
SlaI CTCGAG 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 495, 631
SmoI CTYRAG 2 cut(s) 495, 631
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 4 cut(s) 53, 116, 118, 739
SspMI CTAG 1 cut(s) 600
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 3 cut(s) 227, 636, 689
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 1 cut(s) 752
TaqI TCGA 4 cut(s) 151, 496, 561, 593
TfiI GAWTC 2 cut(s) 257, 590
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 302
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 3 cut(s) 155, 795, 807
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 3 cut(s) 368, 705, 751
TspRI CASTG 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 120, 416
XapI RAATTY 5 cut(s) 343, 388, 422, 500, 758
XhoI CTCGAG 1 cut(s) 495
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.