Prupe.8G021900_v2.0.a1

AhpC/TSA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002253
Physical Location & Seq
Forward (+)
1987326 .. 1992349
5024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G021900.1

Sequence Viewer

Length: 753 bp
ATGGCTGTTGCCACAGTTCCTGTGAACTCAGTGTGCGCATCTCCACTGCGCTCACCGCGCATCCCAACCAAATTTGTGTCCCAGTTCTTAACAAAATGCTCGTCCTTCAAATTGGGTTTTGAATCTCTGCAACTCCGGACCACCCTACCCGGAAGAAAGCTTGTGGTTCGAGCAGCTAGAACCGAGTCCAAAGGGGTCTCTTTGGGCTTCCGAGCTCCCAATTTTGAGATTCCAGAGCCACTTACTGGGAAAGTTTGGAAACTGGAGGATTTTGAACCACATCCTGCTTTACTGGTGATGTTTATCTGCAACCACTGCCCGTTTGTTAAACACCTGAAAAAAGGTATCGTGAAGCTTGCAAATTTCTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCGAATTCTGTAGCTACGCATCCACAGGATGGACCACAATTCATCGCAGAAGAAGCTAAGCTGTTCAAATATCCTTTTCCATATCTATATGACGAGTCACAGGATGTCGCCCAGGATTTTGGAGCAATTTGCACACCCGAGTTTTTTCTATTTAAAAAGGATGGACGGAGGCCATTTGAACTGGTGTACCATGGACAGTTTGATGATTCAAGACCTAGTAATAATGTGTCTGTAAGTGGAAGGGACTTGAGCCTGGCAATAGATTGTGTTCTCAGTGGCCAACCGGTACCATCGATTCAGAAACCAAGTGTTGGATGCAGCATAAAGTGGCACCCAGAGAGAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA Redoxin

Protein Analysis

251

Amino Acids

27.83

Weight (kDa)

9.31

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 37
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 2 cut(s) 688, 732
AccB7I CCANNNNNTGG 3 cut(s) 245, 431, 713
AccII CGCG 1 cut(s) 58
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 3 cut(s) 71, 361, 406
AfaI GTAC 2 cut(s) 590, 690
AfiI CCNNNNNNNGG 3 cut(s) 245, 431, 713
AgeI ACCGGT 1 cut(s) 685
AgsI TTSAA 6 cut(s) 109, 122, 275, 469, 581, 612
AjnI CCWGG 2 cut(s) 513, 654
AluBI AGCT 7 cut(s) 160, 176, 215, 355, 416, 458, 463
AluI AGCT 7 cut(s) 160, 176, 215, 355, 416, 458, 463
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 539
Aor13HI TCCGGA 1 cut(s) 135
AoxI GGCC 2 cut(s) 572, 679
ApeKI GCWGC 2 cut(s) 173, 720
ApoI RAATTY 3 cut(s) 71, 361, 406
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AsiGI ACCGGT 1 cut(s) 685
Asp718I GGTACC 1 cut(s) 688
AspLEI GCGC 3 cut(s) 38, 51, 60
AspS9I GGNCC 2 cut(s) 138, 434
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 45, 307
AsuII TTCGAA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 2 cut(s) 138, 434
BaeI ACNNNNGTAYC 2 cut(s) 572, 605
BalI TGGCCA 1 cut(s) 681
BanI GGYRCC 2 cut(s) 688, 732
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 185, 732
BccI CCATC 3 cut(s) 425, 557, 700
BciT130I CCWGG 2 cut(s) 515, 656
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 177, 618
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 2 cut(s) 174, 721
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 2 cut(s) 175, 722
Bme1390I CCNGG 3 cut(s) 150, 515, 656
Bme18I GGWCC 2 cut(s) 138, 434
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 2 cut(s) 138, 434
BmiI GGNNCC 2 cut(s) 690, 734
BmrFI CCNGG 3 cut(s) 150, 515, 656
BmrI ACTGGG 2 cut(s) 76, 255
BmsI GCATC 4 cut(s) 47, 69, 430, 707
BmuI ACTGGG 2 cut(s) 76, 255
BpmI CTGGAG 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 670
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 695
BsaBI GATNNNNATC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 513, 592
BsaWI WCCGGW 2 cut(s) 135, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 431, 713
Bse118I RCCGGY 1 cut(s) 685
Bse1I ACTGG 5 cut(s) 82, 250, 267, 297, 588
Bse8I GATNNNNATC 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 135
BseBI CCWGG 2 cut(s) 515, 656
BseCI ATCGAT 1 cut(s) 695
BseDI CCNNGG 2 cut(s) 513, 592
BseGI GGATG 7 cut(s) 60, 280, 421, 436, 511, 568, 722
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 3 cut(s) 245, 431, 713
BseMII CTCAG 2 cut(s) 42, 688
BseNI ACTGG 5 cut(s) 82, 250, 267, 297, 588
BseXI GCAGC 2 cut(s) 185, 732
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 574, 681
BshNI GGYRCC 2 cut(s) 688, 732
BshTI ACCGGT 1 cut(s) 685
BshVI ATCGAT 1 cut(s) 695
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 3 cut(s) 136, 150, 686
BslFI GGGAC 2 cut(s) 64, 659
BslI CCNNNNNNNGG 3 cut(s) 245, 431, 713
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 64, 659
BsnI GGCC 2 cut(s) 574, 681
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 539
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 217
Bsp13I TCCGGA 1 cut(s) 135
Bsp1720I GCTNAGC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 592
BspACI CCGC 1 cut(s) 56
BspANI GGCC 2 cut(s) 574, 681
BspCNI CTCAG 2 cut(s) 41, 687
BspDI ATCGAT 1 cut(s) 695
BspEI TCCGGA 1 cut(s) 135
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 690, 734
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 2 cut(s) 688, 732
BspTNI GGTCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 685
BsrI ACTGG 5 cut(s) 82, 250, 267, 297, 588
BssAI RCCGGY 1 cut(s) 685
BssECI CCNNGG 2 cut(s) 513, 592
BssT1I CCWWGG 1 cut(s) 592
Bst2UI CCWGG 2 cut(s) 515, 656
Bst4CI ACNGT 3 cut(s) 16, 600, 750
BstAPI GCANNNNNTGC 2 cut(s) 315, 392
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 28, 459, 674
BstDSI CCRYGG 1 cut(s) 592
BstF5I GGATG 7 cut(s) 60, 280, 421, 436, 511, 568, 722
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 3 cut(s) 38, 51, 60
BstMAI GTCTC 1 cut(s) 202
BstMWI GCNNNNNNNGC 5 cut(s) 55, 57, 315, 392, 455
BstNI CCWGG 2 cut(s) 515, 656
BstSCI CCNGG 3 cut(s) 148, 513, 654
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 185, 732
BstXI CCANNNNNNTGG 1 cut(s) 521
Bsu15I ATCGAT 1 cut(s) 695
BsuRI GGCC 2 cut(s) 574, 681
BsuTUI ATCGAT 1 cut(s) 695
BtgI CCRYGG 1 cut(s) 592
BtgZI GCGATG 1 cut(s) 430
BtsCI GGATG 7 cut(s) 60, 280, 421, 436, 511, 568, 722
BtsI GCAGTG 2 cut(s) 44, 313
BtsIMutI CAGTG 4 cut(s) 36, 44, 313, 682
Cac8I GCNNGC 1 cut(s) 357
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 3 cut(s) 38, 51, 60
Cfr10I RCCGGY 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 138, 434
ClaI ATCGAT 1 cut(s) 695
Csp6I GTAC 2 cut(s) 589, 689
CspAI ACCGGT 1 cut(s) 685
CviAII CATG 1 cut(s) 593
CviQI GTAC 2 cut(s) 589, 689
DdeI CTNAG 3 cut(s) 28, 459, 674
DraI TTTAAA 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 679
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 399
Eco47I GGWCC 2 cut(s) 138, 434
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 513, 654
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 1 cut(s) 596
FaiI YATR 7 cut(s) 369, 371, 484, 490, 492, 594, 725
FaqI GGGAC 2 cut(s) 64, 659
FatI CATG 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 174, 721
FokI GGATG 7 cut(s) 47, 267, 408, 443, 518, 575, 729
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 174, 721
FspAI RTGCGCAY 1 cut(s) 37
FspBI CTAG 2 cut(s) 177, 618
FspI TGCGCA 1 cut(s) 37
GlaI GCGC 3 cut(s) 37, 50, 59
GluI GCNGC 2 cut(s) 174, 721
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 2 cut(s) 574, 681
HapII CCGG 3 cut(s) 136, 150, 686
HhaI GCGC 3 cut(s) 38, 51, 60
Hin1II CATG 1 cut(s) 596
Hin6I GCGC 3 cut(s) 36, 49, 58
HinP1I GCGC 3 cut(s) 36, 49, 58
HindIII AAGCTT 2 cut(s) 158, 353
HinfI GANTC 6 cut(s) 122, 185, 229, 497, 608, 697
HpaII CCGG 3 cut(s) 136, 150, 686
HphI GGTGA 2 cut(s) 45, 307
Hpy166II GTNNAC 2 cut(s) 25, 589
Hpy188I TCNGA 2 cut(s) 212, 702
Hpy188III TCNNGA 4 cut(s) 136, 233, 349, 612
Hpy8I GTNNAC 2 cut(s) 25, 589
HpyAV CCTTC 2 cut(s) 115, 636
HpyCH4III ACNGT 3 cut(s) 16, 600, 750
HpyCH4V TGCA 6 cut(s) 130, 309, 359, 386, 534, 720
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 57, 315, 392, 455
HpyF3I CTNAG 3 cut(s) 28, 459, 674
Hsp92II CATG 1 cut(s) 596
HspAI GCGC 3 cut(s) 36, 49, 58
Kpn2I TCCGGA 1 cut(s) 135
KpnI GGTACC 1 cut(s) 692
LmnI GCTCC 2 cut(s) 220, 524
Lsp1109I GCAGC 2 cut(s) 185, 732
LweI GCATC 4 cut(s) 47, 69, 430, 707
MaeI CTAG 2 cut(s) 177, 618
MaeIII GTNAC 1 cut(s) 498
MboII GAAGA 4 cut(s) 165, 385, 393, 464
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 7 cut(s) 71, 110, 220, 361, 406, 440, 528
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 2 cut(s) 194, 506
MmeI TCCRAC 1 cut(s) 694
MnlI CCTC 2 cut(s) 259, 564
Mox20I TGGCCA 1 cut(s) 681
MroI TCCGGA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 681
MseI TTAA 3 cut(s) 89, 327, 555
Msp20I TGGCCA 1 cut(s) 681
MspI CCGG 3 cut(s) 136, 150, 686
MspR9I CCNGG 3 cut(s) 150, 515, 656
MvaI CCWGG 2 cut(s) 515, 656
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 5 cut(s) 55, 57, 315, 392, 455
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 592
NlaIII CATG 1 cut(s) 596
NlaIV GGNNCC 2 cut(s) 690, 734
NmuCI GTSAC 1 cut(s) 498
NsbI TGCGCA 1 cut(s) 37
NspV TTCGAA 1 cut(s) 404
PfeI GAWTC 4 cut(s) 122, 229, 608, 697
PflMI CCANNNNNTGG 3 cut(s) 245, 431, 713
PinAI ACCGGT 1 cut(s) 685
PkrI GCNGC 2 cut(s) 175, 722
PleI GAGTC 2 cut(s) 193, 505
PpsI GAGTC 2 cut(s) 193, 505
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 513, 654
PspGI CCWGG 2 cut(s) 513, 654
PspN4I GGNNCC 2 cut(s) 690, 734
PspPI GGNCC 2 cut(s) 138, 434
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 590, 690
RsaNI GTAC 2 cut(s) 589, 689
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 3 cut(s) 89, 327, 555
SatI GCNGC 2 cut(s) 174, 721
Sau96I GGNCC 2 cut(s) 138, 434
SchI GAGTC 2 cut(s) 194, 506
ScrFI CCNGG 3 cut(s) 150, 515, 656
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 4 cut(s) 47, 69, 430, 707
SfcI CTRYAG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 2 cut(s) 138, 434
SmlI CTYRAG 1 cut(s) 649
SmoI CTYRAG 1 cut(s) 649
Sse9I AATT 7 cut(s) 71, 110, 220, 361, 406, 440, 528
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 177, 618
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 148, 513, 654
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 3 cut(s) 16, 600, 750
TaqI TCGA 3 cut(s) 169, 404, 695
TasI AATT 7 cut(s) 71, 110, 220, 361, 406, 440, 528
TfiI GAWTC 4 cut(s) 122, 229, 608, 697
Tru1I TTAA 3 cut(s) 89, 327, 555
Tru9I TTAA 3 cut(s) 89, 327, 555
TscAI CASTG 4 cut(s) 36, 51, 320, 682
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 2 cut(s) 173, 720
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 2 cut(s) 386, 433
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 4 cut(s) 36, 51, 320, 682
Van91I CCANNNNNTGG 3 cut(s) 245, 431, 713
VpaK11BI GGWCC 2 cut(s) 138, 434
XapI RAATTY 3 cut(s) 71, 361, 406
XspI CTAG 2 cut(s) 177, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.