pycom05g01060

AhpC/TSA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002253
Physical Location & Seq
Forward (+)
1264659 .. 1266241
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01060.2

Sequence Viewer

Length: 480 bp
ATGCCAAATATACCCTTAACTCTAAATCCACGCACAGTAATTGGCGGTTATTGTACCCTCCCAAACTTCAAGTACGTCTCTTTAGCCGTACAATTACAGTTACTCATAACCGAGCTTAAGCGACATACTCATCTATCAGCCATGGCTGTTGCCACAACAGTCACTGTGAGCTCACTATGCGCATCTCCACTGCTCTCACCTCGCACCGTGCCAAACTTTGTGTACCAATTCGCACCAAAATTCTCGTCTTTCAAAGTGGGTTTTGAATCTCTGCAACTGCGGACCGCTCTGCCCGCAACAAAGCTTGTGGTTCGAGCTGCTCGAACCGAGTCCAAAGGCGTCTCACTGGGCTTCCGAGCTCCCAATTTTGAGATTCCGGAGCCACTTACTGGGAAAGTTTGGAAATTGGAAGATTTTGAATCACATCCTGCATTACTGTCGTTCCAAGTGTCATTTCTTGAAGCAACCAATTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA Redoxin

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

9.64

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 181
AccB7I CCANNNNNTGG 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 4 cut(s) 45, 280, 285, 294
AcsI RAATTY 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 4 cut(s) 55, 74, 90, 224
AfiI CCNNNNNNNGG 1 cut(s) 389
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 5 cut(s) 70, 253, 266, 419, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 5 cut(s) 115, 171, 304, 317, 359
AluI AGCT 5 cut(s) 115, 171, 304, 317, 359
Alw21I GWGCWC 2 cut(s) 173, 361
Alw26I GTCTC 2 cut(s) 82, 346
AlwNI CAGNNNCTG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 239
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 282
BanII GRGCYC 2 cut(s) 173, 361
Bbv12I GWGCWC 2 cut(s) 173, 361
BbvI GCAGC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BcoDI GTCTC 2 cut(s) 82, 346
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 381
BmrI ACTGGG 2 cut(s) 356, 399
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 2 cut(s) 356, 399
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 351, 394
BseAI TCCGGA 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 351, 394
BseXI GCAGC 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 173, 361
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 82, 346
BsmBI CGTCTC 2 cut(s) 82, 346
Bsp1286I GDGCHC 2 cut(s) 173, 361
Bsp13I TCCGGA 1 cut(s) 376
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 4 cut(s) 45, 280, 285, 294
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 351, 394
BssECI CCNNGG 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 6 cut(s) 37, 99, 160, 166, 208, 438
BstACI GRCGYC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 182
BstMAI GTCTC 2 cut(s) 82, 346
BstMWI GCNNNNNNNGC 2 cut(s) 177, 293
BstV1I GCAGC 1 cut(s) 304
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 3 cut(s) 162, 188, 344
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 282
CpoI CGGWCCG 1 cut(s) 282
CseI GACGC 1 cut(s) 328
Csp6I GTAC 4 cut(s) 54, 73, 89, 223
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CspI CGGWCCG 1 cut(s) 282
CviAII CATG 1 cut(s) 142
CviQI GTAC 4 cut(s) 54, 73, 89, 223
Ecl136II GAGCTC 2 cut(s) 171, 359
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 173, 361
Eco47I GGWCC 1 cut(s) 282
Eco53kI GAGCTC 2 cut(s) 171, 359
EcoICRI GAGCTC 2 cut(s) 171, 359
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 173, 361
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 2 cut(s) 82, 346
FaeI CATG 1 cut(s) 145
FaiI YATR 5 cut(s) 11, 107, 126, 143, 178
FatI CATG 1 cut(s) 141
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 411
FriOI GRGCYC 2 cut(s) 173, 361
Fsp4HI GCNGC 1 cut(s) 318
FspAI RTGCGCAY 1 cut(s) 181
FspI TGCGCA 1 cut(s) 181
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 318
HapII CCGG 1 cut(s) 377
HgaI GACGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 4 cut(s) 266, 329, 373, 419
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 356, 479
Hpy188III TCNNGA 2 cut(s) 377, 458
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4III ACNGT 6 cut(s) 37, 99, 160, 166, 208, 438
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 274, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 293
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 376
LmnI GCTCC 2 cut(s) 364, 379
LpnPI CCDG 4 cut(s) 332, 375, 390, 441
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 191
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 99, 160
MbiI CCGCTC 1 cut(s) 287
MboII GAAGA 1 cut(s) 422
MhlI GDGCHC 2 cut(s) 173, 361
MluCI AATT 7 cut(s) 39, 92, 227, 239, 364, 404, 469
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 2 cut(s) 68, 210
MroI TCCGGA 1 cut(s) 376
MseI TTAA 2 cut(s) 17, 117
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 177, 293
NcoI CCATGG 1 cut(s) 141
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PfeI GAWTC 3 cut(s) 266, 373, 419
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp124BI GAGCTC 2 cut(s) 173, 361
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 4 cut(s) 55, 74, 90, 224
RsaNI GTAC 4 cut(s) 54, 73, 89, 223
Rsr2I CGGWCCG 1 cut(s) 282
RsrII CGGWCCG 1 cut(s) 282
SacI GAGCTC 2 cut(s) 173, 361
SaqAI TTAA 2 cut(s) 17, 117
SatI GCNGC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 2 cut(s) 173, 361
SetI ASST 7 cut(s) 78, 117, 173, 202, 306, 319, 361
SfaNI GCATC 1 cut(s) 191
SinI GGWCC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 7 cut(s) 39, 92, 227, 239, 364, 404, 469
SsiI CCGC 4 cut(s) 45, 280, 285, 294
SstI GAGCTC 2 cut(s) 173, 361
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 6 cut(s) 37, 99, 160, 166, 208, 438
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 313, 322
TasI AATT 7 cut(s) 39, 92, 227, 239, 364, 404, 469
TfiI GAWTC 3 cut(s) 266, 373, 419
Tru1I TTAA 2 cut(s) 17, 117
Tru9I TTAA 2 cut(s) 17, 117
TscAI CASTG 3 cut(s) 169, 195, 351
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 3 cut(s) 169, 195, 351
Van91I CCANNNNNTGG 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.