Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Forward (+)

30357571 .. 30361180

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTGTTACTCTCTCCTCAGTCTCAGCCTGCGCGTGTCTGCTTCGTTCACCGCGCAAGGCTGTGTCCCAGTTTTCACCACAAATCTTCAAATTGGGTTCTAATCCTCTGCTGCCGCGGACCACTTTACGGCCCAGAAAGCTTGTCGTTCGAGCTGCTAGAACCGAGTCCAGAGGAGTCTCTCTCGGCTACAGACCTCCCAATTTCGAGCTTCCAGAGCCACTTACTGGGAAAGTCTGGAAATTGGAGGATTTTGAATCCCATCCTGCTTTACTGGTTATGTTTATCTGCAACCACTGCCCATTTGTTATACACCTGAAAAAAGCTATTGTGAAACTTACGAATTTTTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCAAATTCTGTAATAACGCACCCACAGGATGGACCAGAATTTATGTCAGAAGAAGCTAAACTTTTCAAGTATCCTTTCCCATATCTATATGACGAGTCACAGGATGTTGCTCGAGAATTTGGAGCAGTTTGCACACCAGAGTTTTTCCTGTTTAAAAAGGATGGACGCAGGCCTTTCGAATTGGTGTACCACGGCCAGTTTGATGATTCGAGACCTAGTAATAATATGCCTGTAACTGGAAGGGACTTGAGCCTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTATCATCAGCTCAGAAACCCAGCATTGGATGCAGCATAAAGTGGCACCCTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

9.21

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	65 - 183	2e-13	AhpC/TSA family
Redoxin	PF08534	67 - 184	2.1e-13	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	714
AccB7I	CCANNNNNTGG	2 cut(s)	227, 413
AccII	CGCG	3 cut(s)	35, 55, 118
AciI	CCGC	3 cut(s)	53, 116, 118
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	4 cut(s)	343, 388, 422, 500
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
AgsI	TTSAA	4 cut(s)	91, 257, 387, 451
AjnI	CCWGG	1 cut(s)	636
AluBI	AGCT	6 cut(s)	142, 155, 211, 326, 440, 680
AluI	AGCT	6 cut(s)	142, 155, 211, 326, 440, 680
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	3 cut(s)	28, 184, 589
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	3 cut(s)	131, 554, 577
ApeKI	GCWGC	3 cut(s)	112, 155, 702
ApoI	RAATTY	4 cut(s)	343, 388, 422, 500
AspLEI	GCGC	2 cut(s)	35, 57
AspS9I	GGNCC	3 cut(s)	120, 132, 416
AsuHPI	GGTGA	2 cut(s)	42, 69
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	120, 416
BanI	GGYRCC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	3 cut(s)	99, 142, 714
BccI	CCATC	3 cut(s)	270, 407, 539
BceAI	ACGGC	2 cut(s)	146, 592
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	465
BcoDI	GTCTC	3 cut(s)	28, 184, 589
BfaI	CTAG	2 cut(s)	159, 600
BfmI	CTRYAG	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	4 cut(s)	113, 116, 156, 703
BlsI	GCNGC	4 cut(s)	114, 117, 157, 704
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	2 cut(s)	120, 416
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	120, 132, 416
BmiI	GGNNCC	1 cut(s)	716
BmrFI	CCNGG	1 cut(s)	638
BmrI	ACTGGG	2 cut(s)	64, 237
BmsI	GCATC	1 cut(s)	689
BmuI	ACTGGG	2 cut(s)	64, 237
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	652
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	116, 574
Bsc4I	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
Bse1I	ACTGG	6 cut(s)	70, 232, 279, 580, 625, 668
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	116, 574
BseGI	GGATG	5 cut(s)	262, 418, 493, 550, 704
BseLI	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
BseMII	CTCAG	4 cut(s)	33, 39, 670, 695
BseNI	ACTGG	6 cut(s)	70, 232, 279, 580, 625, 668
BseRI	GAGGAG	2 cut(s)	7, 189
BseXI	GCAGC	3 cut(s)	99, 142, 714
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	3 cut(s)	35, 55, 118
BshFI	GGCC	3 cut(s)	133, 556, 579
BshNI	GGYRCC	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	52, 641
BslI	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
BsmAI	GTCTC	3 cut(s)	28, 184, 589
BsmFI	GGGAC	2 cut(s)	52, 641
BsnI	GGCC	3 cut(s)	133, 556, 579
Bso31I	GGTCTC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	655
BspACI	CCGC	3 cut(s)	53, 116, 118
BspANI	GGCC	3 cut(s)	133, 556, 579
BspCNI	CTCAG	4 cut(s)	32, 38, 669, 694
BspFNI	CGCG	3 cut(s)	35, 55, 118
BspLI	GGNNCC	1 cut(s)	716
BspT104I	TTCGAA	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	714
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	6 cut(s)	70, 232, 279, 580, 625, 668
BssECI	CCNNGG	2 cut(s)	116, 574
Bst2UI	CCWGG	1 cut(s)	638
BstAPI	GCANNNNNTGC	3 cut(s)	297, 374, 699
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	31, 554
BstDEI	CTNAG	4 cut(s)	19, 25, 656, 681
BstDSI	CCRYGG	2 cut(s)	116, 574
BstF5I	GGATG	5 cut(s)	262, 418, 493, 550, 704
BstFNI	CGCG	3 cut(s)	35, 55, 118
BstHHI	GCGC	2 cut(s)	35, 57
BstMAI	GTCTC	3 cut(s)	28, 184, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	3 cut(s)	35, 55, 118
BstV1I	GCAGC	3 cut(s)	99, 142, 714
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	133, 556, 579
BtgI	CCRYGG	2 cut(s)	116, 574
BtsCI	GGATG	5 cut(s)	262, 418, 493, 550, 704
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	31, 554
CfoI	GCGC	2 cut(s)	35, 57
Cfr13I	GGNCC	3 cut(s)	120, 132, 416
Cfr42I	CCGCGG	1 cut(s)	119
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	571
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	4 cut(s)	19, 25, 656, 681
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	589
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	120, 416
Eco88I	CYCGRG	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	381
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	52, 641
Fnu4HI	GCNGC	4 cut(s)	113, 116, 156, 703
FokI	GGATG	5 cut(s)	249, 425, 500, 557, 711
Fsp4HI	GCNGC	4 cut(s)	113, 116, 156, 703
FspBI	CTAG	2 cut(s)	159, 600
GlaI	GCGC	2 cut(s)	34, 56
GluI	GCNGC	4 cut(s)	113, 116, 156, 703
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	3 cut(s)	133, 556, 579
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	2 cut(s)	35, 57
Hin6I	GCGC	2 cut(s)	33, 55
HinP1I	GCGC	2 cut(s)	33, 55
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	5 cut(s)	167, 177, 257, 479, 590
HphI	GGTGA	2 cut(s)	42, 69
Hpy166II	GTNNAC	2 cut(s)	50, 571
Hpy188I	TCNGA	2 cut(s)	433, 684
Hpy188III	TCNNGA	5 cut(s)	171, 215, 238, 497, 594
Hpy8I	GTNNAC	2 cut(s)	50, 571
HpyAV	CCTTC	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	291, 368, 516, 702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
HpyF3I	CTNAG	4 cut(s)	19, 25, 656, 681
HspAI	GCGC	2 cut(s)	33, 55
KspI	CCGCGG	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	3 cut(s)	99, 142, 714
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	2 cut(s)	159, 600
MaeIII	GTNAC	3 cut(s)	7, 480, 616
MboII	GAAGA	4 cut(s)	79, 367, 375, 446
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	8 cut(s)	92, 202, 242, 343, 388, 422, 500, 563
MlyI	GAGTC	3 cut(s)	176, 186, 488
MnlI	CCTC	5 cut(s)	28, 117, 167, 207, 241
MseI	TTAA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	3 cut(s)	35, 55, 118
MwoI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
NlaIV	GGNNCC	1 cut(s)	716
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	480
NspV	TTCGAA	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	257, 590
PflMI	CCANNNNNTGG	2 cut(s)	227, 413
PkrI	GCNGC	4 cut(s)	114, 117, 157, 704
PleI	GAGTC	3 cut(s)	175, 185, 487
PpsI	GAGTC	3 cut(s)	175, 185, 487
Psp6I	CCWGG	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	3 cut(s)	120, 132, 416
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	4 cut(s)	113, 116, 156, 703
Sau96I	GGNCC	3 cut(s)	120, 132, 416
SchI	GAGTC	3 cut(s)	176, 186, 488
ScrFI	CCNGG	1 cut(s)	638
SduI	GDGCHC	1 cut(s)	655
SetI	ASST	9 cut(s)	144, 157, 199, 213, 318, 328, 442, 601, 682
SfaNI	GCATC	1 cut(s)	689
SfcI	CTRYAG	1 cut(s)	190
Sfr274I	CTCGAG	1 cut(s)	495
Sfr303I	CCGCGG	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	120, 416
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	495, 631
SmoI	CTYRAG	2 cut(s)	495, 631
Sse9I	AATT	8 cut(s)	92, 202, 242, 343, 388, 422, 500, 563
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	3 cut(s)	53, 116, 118
SspMI	CTAG	2 cut(s)	159, 600
StuI	AGGCCT	1 cut(s)	556
StyD4I	CCNGG	1 cut(s)	636
TaqI	TCGA	5 cut(s)	151, 207, 496, 561, 593
TasI	AATT	8 cut(s)	92, 202, 242, 343, 388, 422, 500, 563
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	257, 590
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	3 cut(s)	112, 155, 702
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	302
Van91I	CCANNNNNTGG	2 cut(s)	227, 413
VpaK11BI	GGWCC	2 cut(s)	120, 416
XapI	RAATTY	4 cut(s)	343, 388, 422, 500
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	2 cut(s)	159, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.