Rorug06G0103500

AhpC/TSA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002253
Physical Location & Seq
Reverse (-)
13723790 .. 13724676
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0103500.1

Sequence Viewer

Length: 621 bp
ATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACTTGTCGTAGCTGCTGACGAACAGCATCTGGAAGCTGTTGAAATCATTGAACGAGTACATTGTCAAGAACATCCCCATCCGGAAAGGGACTTTGTTTTGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAATAAACCTGGGTTGGGGATTGATGACATAAAAGGTGCTGTGGCTGGTGGAACCCTTCTTAGGGGTGCTTTGAAACTGAACCAATTGGTCGAGGTTCGTCCTGGTCTTGTTGTCAAAGACGAGAGAGGAAATTTCATGAGGTGCACGCCATTGTATTCTAGAATAGTTTCCTTGTTTGCTGAGGAAAATGAGTCGCAGTTTGCTGTGCCAGGAGGTCTGATTGGGGTGCATTACCATATGACTAAGGGATCAGCAGAGAAGAAGGGGGTATCAAAGTTAAGCAAGAATAACATTGTGATGTTAAATATTGGATCCAAGGCTACAGAAGCAAAGGATGTTGCTGTAAGGGATAATGTGGTGAAGTTGCGATTCATCACATCTCCAGTTTGCACCAACATAGGTGACAAAGTGGCGATCAGGTCAAAGAGTAGAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA Redoxin

Protein Analysis

206

Amino Acids

22.45

Weight (kDa)

8.99

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF2_C PF09173 143 - 200 1.8e-09 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 124
AclWI GGATC 4 cut(s) 167, 436, 486, 499
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 194, 240, 241
AgsI TTSAA 3 cut(s) 86, 95, 253
AjnI CCWGG 3 cut(s) 187, 280, 388
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 2 cut(s) 56, 80
AluI AGCT 2 cut(s) 56, 80
Alw21I GWGCWC 1 cut(s) 326
Alw44I GTGCAC 1 cut(s) 322
AlwI GGATC 4 cut(s) 167, 436, 486, 499
AlwNI CAGNNNCTG 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 124
ApaLI GTGCAC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 56, 614
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 550, 593
BaeGI GKGCMC 1 cut(s) 326
BamHI GGATCC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 29, 129
BciT130I CCWGG 3 cut(s) 189, 282, 390
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 2 cut(s) 57, 615
BlsI GCNGC 2 cut(s) 58, 616
Bme1390I CCNGG 3 cut(s) 189, 282, 390
BmiI GGNNCC 2 cut(s) 232, 493
BmrFI CCNGG 3 cut(s) 189, 282, 390
BmsI GCATC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 188, 495
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 240, 241
Bse1I ACTGG 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 3 cut(s) 189, 282, 390
BseDI CCNNGG 2 cut(s) 188, 495
BseGI GGATG 4 cut(s) 40, 115, 121, 520
BseLI CCNNNNNNNGG 3 cut(s) 194, 240, 241
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 194, 240, 241
BsmFI GGGAC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 326
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 4 cut(s) 159, 428, 491, 594
BspCNI CTCAG 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 124
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 232, 493
BspPI GGATC 4 cut(s) 167, 436, 486, 499
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 188, 495
BssMI GATC 4 cut(s) 159, 428, 491, 594
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 3 cut(s) 189, 282, 390
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 239, 360, 423
BstF5I GGATG 4 cut(s) 40, 115, 121, 520
BstKTI GATC 4 cut(s) 162, 431, 494, 597
BstMBI GATC 4 cut(s) 159, 428, 491, 594
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 3 cut(s) 189, 282, 390
BstSCI CCNGG 3 cut(s) 187, 280, 388
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BtsCI GGATG 4 cut(s) 40, 115, 121, 520
Cac8I GCNNGC 1 cut(s) 326
CaiI CAGNNNCTG 1 cut(s) 73
CciI TCATGA 1 cut(s) 315
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 316
CviJI RGCY 5 cut(s) 5, 56, 80, 224, 500
CviKI_1 RGCY 5 cut(s) 5, 56, 80, 224, 500
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 239, 360, 423
DpnI GATC 4 cut(s) 161, 430, 493, 596
DpnII GATC 4 cut(s) 159, 428, 491, 594
Eco130I CCWWGG 1 cut(s) 495
EcoRII CCWGG 3 cut(s) 187, 280, 388
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 1 cut(s) 319
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 315
FauNDI CATATG 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 57, 615
FokI GGATG 4 cut(s) 47, 102, 108, 527
Fsp4HI GCNGC 2 cut(s) 57, 615
FspBI CTAG 1 cut(s) 339
GluI GCNGC 2 cut(s) 57, 615
GsuI CTGGAG 1 cut(s) 546
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 319
HinfI GANTC 2 cut(s) 371, 549
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 550, 593
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 5 cut(s) 74, 110, 125, 316, 339
Hpy8I GTNNAC 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 245, 436
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 324, 409, 570
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 3 cut(s) 239, 360, 423
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 159, 428, 491, 594
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 2 cut(s) 42, 581
MalI GATC 4 cut(s) 161, 430, 493, 596
MboI GATC 4 cut(s) 159, 428, 491, 594
MboII GAAGA 1 cut(s) 451
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 2 cut(s) 263, 310
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 7 cut(s) 150, 156, 265, 299, 312, 355, 386
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 346
MseI TTAA 3 cut(s) 15, 458, 482
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 3 cut(s) 189, 282, 390
MunI CAATTG 1 cut(s) 263
MvaI CCWGG 3 cut(s) 189, 282, 390
MwoI GCNNNNNNNGC 1 cut(s) 506
NdeI CATATG 1 cut(s) 417
NdeII GATC 4 cut(s) 159, 428, 491, 594
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 232, 493
NmuCI GTSAC 1 cut(s) 581
PagI TCATGA 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 549
PkrI GCNGC 2 cut(s) 58, 616
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 187, 280, 388
PspGI CCWGG 3 cut(s) 187, 280, 388
PspN4I GGNNCC 2 cut(s) 232, 493
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 491
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 15, 458, 482
SatI GCNGC 2 cut(s) 57, 615
Sau3AI GATC 4 cut(s) 159, 428, 491, 594
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 3 cut(s) 189, 282, 390
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 2 cut(s) 263, 310
SspI AATATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 3 cut(s) 187, 280, 388
StyI CCWWGG 1 cut(s) 495
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 263, 310
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 3 cut(s) 15, 458, 482
Tru9I TTAA 3 cut(s) 15, 458, 482
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 2 cut(s) 56, 614
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 304, 541
VneI GTGCAC 1 cut(s) 322
XapI RAATTY 1 cut(s) 310
XbaI TCTAGA 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.