Rw6G018700

AhpC/TSA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002253
Physical Location & Seq
Reverse (-)
37181090 .. 37184153
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018700.1

Sequence Viewer

Length: 729 bp
ATGGCTGTTACTCTCTCCTCAGTCTCAGCCTGCGCGTGTCTGCTTCGTTCACCGCGCAAGGCTGTGTCCCAGTTTTCACCACAAATCTTCAAATTGGGTTCCAATCCTCTGCTTCCGCGGACCACTTTAAGGCCCAGAAAGCTTGTCGTTCGAGCTGCTAGAACCGAGTCCAAAGGAGTCTCTCTCGGCTTCAGACCTCCCAATTTTGAGCTTCCAGAGCCACTTACCGGGAAAGTTTGGAAATTGGAGGATTTTGAATCCCATCCTGCTCTACTGGTTATGTTTATCTGCAACCACTGCCCATTTGTTATACACCTGAAAAAAGCTATTGTGAAACTTACGAATTTTTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCAAATTCTGTAATAACGCACCCACAGGATGGACCAGAATTTATGTCAGAAGAAGCTAAACTTTTCAAGTATCCTTTCCCATATCTATATGATGAGTCACAGGATGTTGCTCGAGAATTTGGAGCAGTTTGCACACCAGAGTTTTTCCTGTTTAAAAAGGATGGACGCAGGCCCTTCGAATTGGTGTACCGTGGCCAGTTTGATGATTCGAGACCTAGTAATAATGTGCCTGTAACTGGAAGGGACTTGAGCCTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTATCATCAGCTCAGAAACCCAGCATTGGATGCAGCATAAAGTGGCACCCTGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA Redoxin

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

9.3

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 67 - 198 1.2e-13 Redoxin
AhpC-TSA PF00578 67 - 183 2.9e-13 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 413
AccII CGCG 3 cut(s) 35, 55, 118
AciI CCGC 3 cut(s) 53, 116, 118
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 4 cut(s) 343, 388, 422, 500
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 5 cut(s) 129, 227, 413, 620, 695
AgsI TTSAA 4 cut(s) 91, 257, 387, 451
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 6 cut(s) 142, 155, 211, 326, 440, 680
AluI AGCT 6 cut(s) 142, 155, 211, 326, 440, 680
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 3 cut(s) 28, 184, 589
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 3 cut(s) 131, 554, 577
ApeKI GCWGC 2 cut(s) 155, 702
ApoI RAATTY 4 cut(s) 343, 388, 422, 500
AspLEI GCGC 2 cut(s) 35, 57
AspS9I GGNCC 4 cut(s) 120, 132, 416, 555
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 42, 69
AsuII TTCGAA 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 2 cut(s) 120, 416
BalI TGGCCA 1 cut(s) 579
BanI GGYRCC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 2 cut(s) 142, 714
BccI CCATC 3 cut(s) 270, 407, 539
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 1 cut(s) 638
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 28, 184, 589
BfaI CTAG 2 cut(s) 159, 600
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 2 cut(s) 156, 703
BlsI GCNGC 2 cut(s) 157, 704
Bme1390I CCNGG 2 cut(s) 229, 638
Bme18I GGWCC 2 cut(s) 120, 416
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 4 cut(s) 120, 132, 416, 555
BmiI GGNNCC 2 cut(s) 100, 716
BmrFI CCNGG 2 cut(s) 229, 638
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 689
BmuI ACTGGG 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 168, 200
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 116, 574
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 227, 413, 620, 695
Bse1I ACTGG 5 cut(s) 70, 279, 580, 625, 668
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 2 cut(s) 116, 574
BseGI GGATG 5 cut(s) 262, 418, 493, 550, 704
BseLI CCNNNNNNNGG 5 cut(s) 129, 227, 413, 620, 695
BseMII CTCAG 5 cut(s) 33, 39, 670, 695, 711
BseNI ACTGG 5 cut(s) 70, 279, 580, 625, 668
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 142, 714
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 3 cut(s) 35, 55, 118
BshFI GGCC 3 cut(s) 133, 556, 579
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 52, 641
BslI CCNNNNNNNGG 5 cut(s) 129, 227, 413, 620, 695
BsmAI GTCTC 3 cut(s) 28, 184, 589
BsmFI GGGAC 2 cut(s) 52, 641
BsnI GGCC 3 cut(s) 133, 556, 579
Bso31I GGTCTC 1 cut(s) 589
BsoBI CYCGRG 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 655
BspACI CCGC 3 cut(s) 53, 116, 118
BspANI GGCC 3 cut(s) 133, 556, 579
BspCNI CTCAG 5 cut(s) 32, 38, 669, 694, 712
BspFNI CGCG 3 cut(s) 35, 55, 118
BspLI GGNNCC 2 cut(s) 100, 716
BspT104I TTCGAA 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 714
BspTNI GGTCTC 1 cut(s) 589
BsrI ACTGG 5 cut(s) 70, 279, 580, 625, 668
BssECI CCNNGG 2 cut(s) 116, 574
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 1 cut(s) 575
BstAPI GCANNNNNTGC 3 cut(s) 297, 374, 699
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 2 cut(s) 31, 554
BstDEI CTNAG 5 cut(s) 19, 25, 656, 681, 720
BstDSI CCRYGG 2 cut(s) 116, 574
BstF5I GGATG 5 cut(s) 262, 418, 493, 550, 704
BstFNI CGCG 3 cut(s) 35, 55, 118
BstHHI GCGC 2 cut(s) 35, 57
BstMAI GTCTC 3 cut(s) 28, 184, 589
BstMWI GCNNNNNNNGC 5 cut(s) 139, 217, 297, 374, 699
BstNI CCWGG 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 227, 636
BstUI CGCG 3 cut(s) 35, 55, 118
BstV1I GCAGC 2 cut(s) 142, 714
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 3 cut(s) 133, 556, 579
BtgI CCRYGG 2 cut(s) 116, 574
BtsCI GGATG 5 cut(s) 262, 418, 493, 550, 704
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 31, 554
CfoI GCGC 2 cut(s) 35, 57
Cfr13I GGNCC 4 cut(s) 120, 132, 416, 555
Cfr42I CCGCGG 1 cut(s) 119
CseI GACGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 571
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 5 cut(s) 19, 25, 656, 681, 720
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 120, 416
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 636
EcoRV GATATC 1 cut(s) 381
FaiI YATR 9 cut(s) 281, 311, 351, 353, 428, 466, 472, 474, 707
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 52, 641
Fnu4HI GCNGC 2 cut(s) 156, 703
FokI GGATG 5 cut(s) 249, 425, 500, 557, 711
Fsp4HI GCNGC 2 cut(s) 156, 703
FspBI CTAG 2 cut(s) 159, 600
GlaI GCGC 2 cut(s) 34, 56
GluI GCNGC 2 cut(s) 156, 703
GsaI CCCAGC 1 cut(s) 693
HaeIII GGCC 3 cut(s) 133, 556, 579
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 558
HhaI GCGC 2 cut(s) 35, 57
Hin6I GCGC 2 cut(s) 33, 55
HinP1I GCGC 2 cut(s) 33, 55
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 5 cut(s) 167, 177, 257, 479, 590
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 42, 69
Hpy166II GTNNAC 2 cut(s) 50, 571
Hpy188I TCNGA 3 cut(s) 194, 433, 684
Hpy188III TCNNGA 3 cut(s) 215, 497, 594
Hpy8I GTNNAC 2 cut(s) 50, 571
HpyAV CCTTC 2 cut(s) 568, 618
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4V TGCA 4 cut(s) 291, 368, 516, 702
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 217, 297, 374, 699
HpyF3I CTNAG 5 cut(s) 19, 25, 656, 681, 720
HspAI GCGC 2 cut(s) 33, 55
KspI CCGCGG 1 cut(s) 119
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 2 cut(s) 142, 714
LweI GCATC 1 cut(s) 689
MaeI CTAG 2 cut(s) 159, 600
MaeIII GTNAC 3 cut(s) 7, 480, 616
MboII GAAGA 4 cut(s) 79, 367, 375, 446
MhlI GDGCHC 1 cut(s) 655
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 8 cut(s) 92, 202, 242, 343, 388, 422, 500, 563
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 3 cut(s) 176, 186, 488
MnlI CCTC 4 cut(s) 28, 117, 207, 241
Mox20I TGGCCA 1 cut(s) 579
MscI TGGCCA 1 cut(s) 579
MseI TTAA 2 cut(s) 128, 537
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 229, 638
MvaI CCWGG 1 cut(s) 638
MvnI CGCG 3 cut(s) 35, 55, 118
MwoI GCNNNNNNNGC 5 cut(s) 139, 217, 297, 374, 699
NciI CCSGG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 100, 716
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 480
NspV TTCGAA 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 495
PfeI GAWTC 2 cut(s) 257, 590
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 2 cut(s) 157, 704
PleI GAGTC 3 cut(s) 175, 185, 487
PpsI GAGTC 3 cut(s) 175, 185, 487
Psp6I CCWGG 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 2 cut(s) 100, 716
PspPI GGNCC 4 cut(s) 120, 132, 416, 555
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SacII CCGCGG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 128, 537
SatI GCNGC 2 cut(s) 156, 703
Sau96I GGNCC 4 cut(s) 120, 132, 416, 555
SchI GAGTC 3 cut(s) 176, 186, 488
ScrFI CCNGG 2 cut(s) 229, 638
SduI GDGCHC 1 cut(s) 655
SetI ASST 9 cut(s) 144, 157, 199, 213, 318, 328, 442, 601, 682
SfaNI GCATC 1 cut(s) 689
Sfr274I CTCGAG 1 cut(s) 495
Sfr303I CCGCGG 1 cut(s) 119
SfuI TTCGAA 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 119
SinI GGWCC 2 cut(s) 120, 416
SlaI CTCGAG 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 495, 631
SmoI CTYRAG 2 cut(s) 495, 631
Sse9I AATT 8 cut(s) 92, 202, 242, 343, 388, 422, 500, 563
SsiI CCGC 3 cut(s) 53, 116, 118
SspMI CTAG 2 cut(s) 159, 600
StyD4I CCNGG 2 cut(s) 227, 636
TaaI ACNGT 1 cut(s) 575
TaqI TCGA 4 cut(s) 151, 496, 561, 593
TasI AATT 8 cut(s) 92, 202, 242, 343, 388, 422, 500, 563
TfiI GAWTC 2 cut(s) 257, 590
Tru1I TTAA 2 cut(s) 128, 537
Tru9I TTAA 2 cut(s) 128, 537
TscAI CASTG 1 cut(s) 302
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 2 cut(s) 155, 702
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 120, 416
XapI RAATTY 4 cut(s) 343, 388, 422, 500
XhoI CTCGAG 1 cut(s) 495
XspI CTAG 2 cut(s) 159, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.