Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Reverse (-)

12703148 .. 12707797

Gene Structure 4650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14420.t16

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTGTCACTCTCTCCTCTCACTCAGCCTGCGCATGTCTGCTTCGTTCACCGCGCACCTCCGTATCCCGGTTTTCGCCGCAGTCCTTCAAATTGGGTTCTTATCCCCAGCTTCCGCGGACCACTCTACCGCCCAGAATGCTCGTCGTTCGCGCTGCTAGAACCGAGTCCAGAGGAGTCTCTCTTGGCTTCAGACCTCCCAGTTTTGAGATTCCAGAGCCACTTACTGGGAAAGTTTGGAAATTGGAGGACTTTGAATCCCATCCTGCTTTACTGGTTATGTTTATCTGCAACCACTGCCCGTTTGTTATACACCTCAAAAAAGCTATTGTCAAACTTGCGAATTTTTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCAAATTCTGTAACAACTCACCCACAGGATGGGCCCGAGTTCATGTCAGAAGAGGCTAGACTTTTCAAGTATCCTTTCCCATATCTATATGACGAGTCACAGGATGTTGCCCGAGAATTTGGAGCAGTTTGCACACCGGAATTTTTCCTATTTAAAAAGGATGGACGCAGGCCATTCGAATTGGTGTACCATGGCCAGTTTGATGATTCGAGACCTAGTAATAATGTGCCTGTAACCGGAAGGGACTTGAGTTTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTACCATCAGCTCAGAAACCCAGCATTGGATGTAGCATAAAGTGGCACCCTGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA Redoxin

Protein Analysis

243

Amino Acids

27.12

Weight (kDa)

9.03

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	67 - 183	4.1e-13	AhpC/TSA family
Redoxin	PF08534	67 - 184	4.8e-13	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	714
AccB7I	CCANNNNNTGG	2 cut(s)	227, 413
AccII	CGCG	3 cut(s)	55, 118, 153
AciI	CCGC	5 cut(s)	53, 80, 116, 118, 131
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	4 cut(s)	343, 388, 500, 524
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	572, 672
AfiI	CCNNNNNNNGG	5 cut(s)	69, 227, 413, 620, 695
AgsI	TTSAA	4 cut(s)	91, 257, 387, 451
AluBI	AGCT	3 cut(s)	112, 326, 680
AluI	AGCT	3 cut(s)	112, 326, 680
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	184, 589
Ama87I	CYCGRG	2 cut(s)	419, 495
AoxI	GGCC	3 cut(s)	416, 554, 577
ApaI	GGGCCC	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	4 cut(s)	343, 388, 500, 524
AspLEI	GCGC	3 cut(s)	35, 57, 155
AspS9I	GGNCC	3 cut(s)	120, 416, 417
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	42, 395
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	2 cut(s)	419, 495
AvaII	GGWCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	420
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	4 cut(s)	270, 407, 539, 682
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciVI	GTATCC	2 cut(s)	76, 465
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	184, 589
BfaI	CTAG	3 cut(s)	159, 441, 600
BfuI	GTATCC	2 cut(s)	76, 465
BisI	GCNGC	2 cut(s)	80, 156
BlsI	GCNGC	2 cut(s)	81, 157
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	2 cut(s)	419, 495
BmgT120I	GGNCC	3 cut(s)	120, 416, 417
BmiI	GGNNCC	2 cut(s)	418, 716
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	2 cut(s)	195, 237
BmuI	ACTGGG	2 cut(s)	195, 237
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	116, 574
BsaWI	WCCGGW	2 cut(s)	520, 620
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 227, 413, 620, 695
Bse1I	ACTGG	5 cut(s)	201, 232, 279, 580, 668
BseDI	CCNNGG	2 cut(s)	116, 574
BseGI	GGATG	5 cut(s)	262, 418, 493, 550, 704
BseLI	CCNNNNNNNGG	5 cut(s)	69, 227, 413, 620, 695
BseMII	CTCAG	4 cut(s)	39, 670, 695, 711
BseNI	ACTGG	5 cut(s)	201, 232, 279, 580, 668
BseRI	GAGGAG	2 cut(s)	7, 189
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	2 cut(s)	108, 689
Bsh1236I	CGCG	3 cut(s)	55, 118, 153
BshFI	GGCC	3 cut(s)	418, 556, 579
BshNI	GGYRCC	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	2 cut(s)	419, 495
BsiSI	CCGG	3 cut(s)	70, 521, 621
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	5 cut(s)	69, 227, 413, 620, 695
BsmAI	GTCTC	2 cut(s)	184, 589
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	418, 556, 579
Bso31I	GGTCTC	1 cut(s)	589
BsoBI	CYCGRG	2 cut(s)	419, 495
Bsp119I	TTCGAA	1 cut(s)	561
Bsp120I	GGGCCC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	420, 655
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	5 cut(s)	53, 80, 116, 118, 131
BspANI	GGCC	3 cut(s)	418, 556, 579
BspCNI	CTCAG	4 cut(s)	38, 669, 694, 712
BspFNI	CGCG	3 cut(s)	55, 118, 153
BspLI	GGNNCC	2 cut(s)	418, 716
BspT104I	TTCGAA	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	714
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	5 cut(s)	201, 232, 279, 580, 668
BssECI	CCNNGG	2 cut(s)	116, 574
BssT1I	CCWWGG	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	429
BstAPI	GCANNNNNTGC	2 cut(s)	297, 374
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	31, 554
BstDEI	CTNAG	4 cut(s)	25, 656, 681, 720
BstDSI	CCRYGG	2 cut(s)	116, 574
BstF5I	GGATG	5 cut(s)	262, 418, 493, 550, 704
BstFNI	CGCG	3 cut(s)	55, 118, 153
BstHHI	GCGC	3 cut(s)	35, 57, 155
BstMAI	GTCTC	2 cut(s)	184, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 297, 374
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	3 cut(s)	55, 118, 153
BstV1I	GCAGC	1 cut(s)	142
BsuI	GTATCC	2 cut(s)	76, 465
BsuRI	GGCC	3 cut(s)	418, 556, 579
BtgI	CCRYGG	2 cut(s)	116, 574
BtsCI	GGATG	5 cut(s)	262, 418, 493, 550, 704
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	31, 554
CfoI	GCGC	3 cut(s)	35, 57, 155
Cfr13I	GGNCC	3 cut(s)	120, 416, 417
Cfr42I	CCGCGG	1 cut(s)	119
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	571, 671
CviAII	CATG	3 cut(s)	36, 427, 575
CviQI	GTAC	2 cut(s)	571, 671
DdeI	CTNAG	4 cut(s)	25, 656, 681, 720
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	589
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	2 cut(s)	419, 495
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	39, 430, 578
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	3 cut(s)	35, 426, 574
Fnu4HI	GCNGC	2 cut(s)	80, 156
FokI	GGATG	5 cut(s)	249, 425, 500, 557, 711
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	80, 156
FspBI	CTAG	3 cut(s)	159, 441, 600
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	3 cut(s)	34, 56, 154
GluI	GCNGC	2 cut(s)	80, 156
GsaI	CCCAGC	2 cut(s)	112, 693
HaeIII	GGCC	3 cut(s)	418, 556, 579
HapII	CCGG	3 cut(s)	70, 521, 621
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	3 cut(s)	35, 57, 155
Hin1II	CATG	3 cut(s)	39, 430, 578
Hin6I	GCGC	3 cut(s)	33, 55, 153
HinP1I	GCGC	3 cut(s)	33, 55, 153
HinfI	GANTC	6 cut(s)	167, 177, 211, 257, 479, 590
HpaII	CCGG	3 cut(s)	70, 521, 621
HphI	GGTGA	2 cut(s)	42, 395
Hpy166II	GTNNAC	2 cut(s)	50, 571
Hpy188I	TCNGA	3 cut(s)	194, 433, 684
Hpy188III	TCNNGA	3 cut(s)	171, 215, 594
Hpy8I	GTNNAC	2 cut(s)	50, 571
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	97, 618
HpyCH4V	TGCA	3 cut(s)	291, 368, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 297, 374
HpyF3I	CTNAG	4 cut(s)	25, 656, 681, 720
Hsp92II	CATG	3 cut(s)	39, 430, 578
HspAI	GCGC	3 cut(s)	33, 55, 153
KspI	CCGCGG	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	3 cut(s)	159, 441, 600
MaeIII	GTNAC	4 cut(s)	7, 394, 480, 616
MboII	GAAGA	3 cut(s)	367, 375, 446
MhlI	GDGCHC	2 cut(s)	420, 655
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	7 cut(s)	92, 242, 343, 388, 500, 524, 563
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	3 cut(s)	176, 186, 488
MnlI	CCTC	7 cut(s)	28, 70, 167, 207, 241, 326, 430
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	3 cut(s)	70, 521, 621
MspR9I	CCNGG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	3 cut(s)	55, 118, 153
MwoI	GCNNNNNNNGC	3 cut(s)	139, 297, 374
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	574
NlaIII	CATG	3 cut(s)	39, 430, 578
NlaIV	GGNNCC	2 cut(s)	418, 716
NmuCI	GTSAC	2 cut(s)	7, 480
NsbI	TGCGCA	1 cut(s)	34
NspI	RCATGY	1 cut(s)	39
NspV	TTCGAA	1 cut(s)	561
PctI	GAATGC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	211, 257, 590
PflMI	CCANNNNNTGG	2 cut(s)	227, 413
PkrI	GCNGC	2 cut(s)	81, 157
PleI	GAGTC	3 cut(s)	175, 185, 487
PpsI	GAGTC	3 cut(s)	175, 185, 487
PspFI	CCCAGC	2 cut(s)	108, 689
PspN4I	GGNNCC	2 cut(s)	418, 716
PspOMI	GGGCCC	1 cut(s)	416
PspPI	GGNCC	3 cut(s)	120, 416, 417
RsaI	GTAC	2 cut(s)	572, 672
RsaNI	GTAC	2 cut(s)	571, 671
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	2 cut(s)	80, 156
Sau96I	GGNCC	3 cut(s)	120, 416, 417
SchI	GAGTC	3 cut(s)	176, 186, 488
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	420, 655
SetI	ASST	7 cut(s)	62, 114, 199, 318, 328, 601, 682
Sfr303I	CCGCGG	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	7 cut(s)	92, 242, 343, 388, 500, 524, 563
SsiI	CCGC	5 cut(s)	53, 80, 116, 118, 131
SspMI	CTAG	3 cut(s)	159, 441, 600
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	574
TaqI	TCGA	2 cut(s)	561, 593
TasI	AATT	7 cut(s)	92, 242, 343, 388, 500, 524, 563
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	211, 257, 590
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	2 cut(s)	7, 480
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	2 cut(s)	7, 480
TspDTI	ATGAA	2 cut(s)	368, 415
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	302
Van91I	CCANNNNNTGG	2 cut(s)	227, 413
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	4 cut(s)	343, 388, 500, 524
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	3 cut(s)	159, 441, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.