Rmu_co8460067.1_g000002

AhpC/TSA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8460067.1
OG0002253
Physical Location & Seq
Forward (+)
1254 .. 1697
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8460067.1_g000002.1.cds

Sequence Viewer

Length: 306 bp
atggctgttactctctcctcagtctcagcctgcgcgtgtctgcttcgtttaccgcgcaaggctgtgtcccagttttcaccacaaatcttcaaattgggttccaatcctctgcttccgcggaccactttacgacccagaaagcttgtcgttcgggctgctagaaccgagtccagaggagtctctctcggcttcagacctcccaagtttgagcttccagagccacttaccgggaaagtttggaaattggaggattttgaatcccatcctgctctactggccgccaatgctaatgttacaagcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA Redoxin

Protein Analysis

101

Amino Acids

11.05

Weight (kDa)

10.91

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 35, 55, 118
AciI CCGC 4 cut(s) 53, 116, 118, 279
AcoI YGGCCR 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 91, 257
AluBI AGCT 2 cut(s) 142, 211
AluI AGCT 2 cut(s) 142, 211
Alw26I GTCTC 2 cut(s) 28, 184
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 2 cut(s) 35, 57
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 270
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 28, 184
BfaI CTAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 156, 279
BlsI GCNGC 2 cut(s) 157, 280
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 70, 279
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 33, 39
BseNI ACTGG 2 cut(s) 70, 279
BseRI GAGGAG 2 cut(s) 7, 189
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 3 cut(s) 35, 55, 118
BshFI GGCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 28, 184
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 1 cut(s) 278
BspACI CCGC 4 cut(s) 53, 116, 118, 279
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 32, 38
BspFNI CGCG 3 cut(s) 35, 55, 118
BspLI GGNNCC 1 cut(s) 100
BsrI ACTGG 2 cut(s) 70, 279
BssECI CCNNGG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 19, 25
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 3 cut(s) 35, 55, 118
BstHHI GCGC 2 cut(s) 35, 57
BstMAI GTCTC 2 cut(s) 28, 184
BstMWI GCNNNNNNNGC 3 cut(s) 217, 275, 284
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 3 cut(s) 35, 55, 118
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 2 cut(s) 35, 57
Cfr13I GGNCC 1 cut(s) 120
Cfr42I CCGCGG 1 cut(s) 119
CviJI RGCY 9 cut(s) 5, 29, 62, 142, 155, 189, 211, 220, 278
CviKI_1 RGCY 9 cut(s) 5, 29, 62, 142, 155, 189, 211, 220, 278
DdeI CTNAG 2 cut(s) 19, 25
EaeI YGGCCR 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 175
FaqI GGGAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 156, 279
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 156, 279
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 34, 56
GluI GCNGC 2 cut(s) 156, 279
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 228
HhaI GCGC 2 cut(s) 35, 57
Hin6I GCGC 2 cut(s) 33, 55
HinP1I GCGC 2 cut(s) 33, 55
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 167, 177, 257
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 171, 215
Hpy8I GTNNAC 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 275, 284
HpyF3I CTNAG 2 cut(s) 19, 25
HspAI GCGC 2 cut(s) 33, 55
KspI CCGCGG 1 cut(s) 119
LpnPI CCDG 8 cut(s) 43, 83, 148, 184, 228, 241, 260, 279
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 7, 292
MboII GAAGA 1 cut(s) 79
MluCI AATT 2 cut(s) 92, 242
MlyI GAGTC 2 cut(s) 176, 186
MnlI CCTC 5 cut(s) 28, 117, 167, 207, 241
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 229
MvnI CGCG 3 cut(s) 35, 55, 118
MwoI GCNNNNNNNGC 3 cut(s) 217, 275, 284
NciI CCSGG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 165
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 157, 280
PleI GAGTC 2 cut(s) 175, 185
PpsI GAGTC 2 cut(s) 175, 185
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 120
SacII CCGCGG 1 cut(s) 119
SatI GCNGC 2 cut(s) 156, 279
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 176, 186
ScrFI CCNGG 1 cut(s) 229
SetI ASST 3 cut(s) 144, 199, 213
Sfr303I CCGCGG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 119
SinI GGWCC 1 cut(s) 120
Sse9I AATT 2 cut(s) 92, 242
SsiI CCGC 4 cut(s) 53, 116, 118, 279
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 227
TasI AATT 2 cut(s) 92, 242
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 257
TseI GCWGC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 120
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.