Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002253

Physical Location & Seq

Genomic Coordinates Forward (+)

13714996 .. 13721103

Gene Structure 6108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTGAGACCCAAGAATGGTATCAAAGAAAAGCGGCCTTCATTTTTCAAGGTTATTATTCCAGGCTACTCCACTCAACATTTGAGGATCCCACCACCATTCTTGGAGTTTATAAGGAATGACCTATCTGATGAAGCAACCTTGAACTCGAACACTTGTTCAGAGAGGTCTTGGAATGTTAGAGTACGTAAAACAAAAGGAGGTGTGTATTTCAAGGATGGGTGGCAGGGGTTCTTAAAAGATAACTCTGTGGAAGATGGTGACTTTTTGGTATTCGAGTATGAAGGAAACATGCATTTCAGCGTACAGATTTTTGACAACAGTTGTTGTGAGAGAGACTCTTTTCCTGAAATTGAAACACACACAAAATCCACCTTTGCTGAGTGTAAGAAAGGGCATCCTGGTAGACCGAGGAAATCAGATATCGGTTGTTCTAAGCGTCCCCTCGCATTGAACTCTAGAAAAGACAATTCAGTTGCAGATAACATAGCTAAGAAAAGGCTTCCTGGTAGACCAAGAAAATCCCATATCCGTCGTTATAAGCGCCCCTGCCCATCAAACTCTGGCGAAGACAATTCAGTACCAGATGACATAGTTGAGGAATCTGCAAAATCTTTCAAGTCCAACTATCCTCATGTCACAAAAACCATTAAAGAGACTTTTTGTGTGTACTCATTCCCCACATCCTTCTATAGGGAGCATCTCTCTGGGGGCAACTATGAAGTTGTTTTCCTGAAAATTGCAAGGGGGGAAAGATGGTACCAAGTGAAGCTTGTACGATCCCTAAGAACGGCATACTTGTCCAAAGGGTGGTCTGAGTTTGCATGTGCTAACCAAATCAAGGTCGGAAATATTTGCGTATTCGAAGTTGTGGAAGAAAACAAATTGGTGGTTCACGTAGTCCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

303

Amino Acids

34.85

Weight (kDa)

9.35

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	15 - 107	2.6e-18	B3 DNA binding domain
B3	PF02362	225 - 301	8e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21350 AT1G21350 AT1G21350 AT1G21350 AT1G21350
fragaria_vesca	FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420 FvH4_2g14420
malus_domestica	MD05G1017900.v1.1
prunus_persica	Prupe.8G021900_v2.0.a1
pyrus_communis	pycom05g01060
rosa_chinensis	RchiOBHm_Chr6g0276751
rosa_laevigata	RLG00000013365
rosa_multiflora	Rmu_co8460067.1_g000002 Rmu_sc0004481.1_g000025
rosa_roxburghii	Rroxscaffold_7G00192000
rosa_rugosa	Rorug06G0103400 Rorug06G0103400 Rorug06G0103500 Rorug06G0103600 Rorug06G0103700 Rorug06G0103800.1
rosa_samantha	Rh6AG213900 Rh6BG218800 Rh6CG221500 Rh6DG211400
rosa_wichuraiana	Rw6G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	113, 540
Acc65I	GGTACC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	810
AccI	GTMKAC	2 cut(s)	406, 511
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	3 cut(s)	82, 95, 774
AfaI	GTAC	6 cut(s)	186, 306, 582, 671, 761, 777
AfiI	CCNNNNNNNGG	5 cut(s)	17, 693, 790, 810, 841
AgsI	TTSAA	6 cut(s)	49, 145, 214, 356, 454, 619
AjnI	CCWGG	3 cut(s)	61, 400, 505
AluBI	AGCT	2 cut(s)	491, 772
AluI	AGCT	2 cut(s)	491, 772
Alw26I	GTCTC	2 cut(s)	330, 650
AlwI	GGATC	3 cut(s)	82, 95, 774
AoxI	GGCC	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	16, 272
AsuII	TTCGAA	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	759
BbsI	GAAGAC	1 cut(s)	576
BccI	CCATC	4 cut(s)	212, 251, 562, 750
BceAI	ACGGC	1 cut(s)	807
BciT130I	CCWGG	3 cut(s)	63, 402, 507
BcoDI	GTCTC	2 cut(s)	330, 650
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	691
BfoI	RGCGCY	1 cut(s)	547
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	3 cut(s)	63, 402, 507
BmiI	GGNNCC	2 cut(s)	89, 761
BmrFI	CCNGG	3 cut(s)	63, 402, 507
BmsI	GCATC	2 cut(s)	406, 709
BpiI	GAAGAC	1 cut(s)	576
BplI	GAGNNNNNCTC	4 cut(s)	323, 355, 689, 721
Bpu14I	TTCGAA	1 cut(s)	864
BsaAI	YACGTR	2 cut(s)	188, 898
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 693, 790, 810, 841
BseBI	CCWGG	3 cut(s)	63, 402, 507
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	223, 397, 683
BseLI	CCNNNNNNNGG	5 cut(s)	17, 693, 790, 810, 841
BseMII	CTCAG	2 cut(s)	372, 807
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	5 cut(s)	17, 693, 790, 810, 841
BsmAI	GTCTC	2 cut(s)	330, 650
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	864
Bsp143I	GATC	2 cut(s)	87, 779
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	373, 808
BspLI	GGNNCC	2 cut(s)	89, 761
BspPI	GGATC	3 cut(s)	82, 95, 774
BspT104I	TTCGAA	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	759
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	87, 779
Bst2UI	CCWGG	3 cut(s)	63, 402, 507
Bst4CI	ACNGT	1 cut(s)	323
BstBAI	YACGTR	2 cut(s)	188, 898
BstBI	TTCGAA	1 cut(s)	864
BstDEI	CTNAG	5 cut(s)	381, 435, 492, 785, 816
BstENI	CCTNNNNNAGG	1 cut(s)	691
BstF5I	GGATG	3 cut(s)	223, 397, 683
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	2 cut(s)	90, 782
BstMAI	GTCTC	2 cut(s)	330, 650
BstMBI	GATC	2 cut(s)	87, 779
BstNI	CCWGG	3 cut(s)	63, 402, 507
BstNSI	RCATGY	2 cut(s)	295, 828
BstSCI	CCNGG	3 cut(s)	61, 400, 505
BstSFI	CTRYAG	1 cut(s)	691
BstSNI	TACGTA	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	223, 397, 683
CfoI	GCGC	1 cut(s)	546
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	6 cut(s)	185, 305, 581, 670, 760, 776
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	3 cut(s)	292, 635, 825
CviJI	RGCY	5 cut(s)	37, 66, 491, 502, 772
CviKI_1	RGCY	5 cut(s)	37, 66, 491, 502, 772
CviQI	GTAC	6 cut(s)	185, 305, 581, 670, 760, 776
DdeI	CTNAG	5 cut(s)	381, 435, 492, 785, 816
DpnI	GATC	2 cut(s)	89, 781
DpnII	GATC	2 cut(s)	87, 779
Eco105I	TACGTA	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	691
EcoRII	CCWGG	3 cut(s)	61, 400, 505
EcoRV	GATATC	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	3 cut(s)	295, 638, 828
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	3 cut(s)	291, 634, 824
FblI	GTMKAC	2 cut(s)	406, 511
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	3 cut(s)	230, 384, 670
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	547
HaeIII	GGCC	1 cut(s)	37
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	295, 638, 828
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	2 cut(s)	338, 602
HphI	GGTGA	2 cut(s)	16, 272
Hpy166II	GTNNAC	4 cut(s)	407, 512, 670, 895
Hpy188I	TCNGA	5 cut(s)	130, 163, 421, 817, 848
Hpy188III	TCNNGA	3 cut(s)	347, 459, 733
Hpy8I	GTNNAC	4 cut(s)	407, 512, 670, 895
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	3 cut(s)	48, 278, 697
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	187, 897
HpyCH4V	TGCA	5 cut(s)	295, 479, 608, 743, 824
HpyF3I	CTNAG	5 cut(s)	381, 435, 492, 785, 816
HpySE526I	ACGT	2 cut(s)	187, 897
Hsp92II	CATG	3 cut(s)	295, 638, 828
HspAI	GCGC	1 cut(s)	544
KpnI	GGTACC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	87, 779
LmnI	GCTCC	1 cut(s)	697
LweI	GCATC	2 cut(s)	406, 709
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	187, 897
MaeIII	GTNAC	2 cut(s)	260, 637
MalI	GATC	2 cut(s)	89, 781
MboI	GATC	2 cut(s)	87, 779
MboII	GAAGA	3 cut(s)	266, 581, 887
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	5 cut(s)	351, 469, 574, 738, 884
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	648, 826
MnlI	CCTC	7 cut(s)	78, 159, 194, 405, 455, 592, 642
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	236, 651
MspR9I	CCNGG	3 cut(s)	63, 402, 507
MvaI	CCWGG	3 cut(s)	63, 402, 507
NdeII	GATC	2 cut(s)	87, 779
NlaIII	CATG	3 cut(s)	295, 638, 828
NlaIV	GGNNCC	2 cut(s)	89, 761
NmuCI	GTSAC	2 cut(s)	260, 637
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	2 cut(s)	295, 828
NspV	TTCGAA	1 cut(s)	864
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	810
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	2 cut(s)	188, 898
PsiI	TTATAA	2 cut(s)	113, 540
Psp6I	CCWGG	3 cut(s)	61, 400, 505
PspGI	CCWGG	3 cut(s)	61, 400, 505
PspN4I	GGNNCC	2 cut(s)	89, 761
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	6 cut(s)	186, 306, 582, 671, 761, 777
RsaNI	GTAC	6 cut(s)	185, 305, 581, 670, 760, 776
SaqAI	TTAA	2 cut(s)	236, 651
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	87, 779
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	63, 402, 507
SfaNI	GCATC	2 cut(s)	406, 709
SfcI	CTRYAG	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	864
SnaBI	TACGTA	1 cut(s)	188
Sse9I	AATT	5 cut(s)	351, 469, 574, 738, 884
SsiI	CCGC	1 cut(s)	34
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	61, 400, 505
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	190, 900
TaqI	TCGA	3 cut(s)	149, 276, 864
TaqII	GACCGA	1 cut(s)	424
TasI	AATT	5 cut(s)	351, 469, 574, 738, 884
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	2 cut(s)	236, 651
Tru9I	TTAA	2 cut(s)	236, 651
TseFI	GTSAC	2 cut(s)	260, 637
Tsp45I	GTSAC	2 cut(s)	260, 637
TspDTI	ATGAA	4 cut(s)	30, 147, 297, 735
TspGWI	ACGGA	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	810
XagI	CCTNNNNNAGG	1 cut(s)	691
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	2 cut(s)	295, 828
XmiI	GTMKAC	2 cut(s)	406, 511
XspI	CTAG	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.