Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009190

Physical Location & Seq

Genomic Coordinates Reverse (-)

7570845 .. 7573847

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGTCTTCCGCCGCTTCTCCTTCCTTATCTCTACTCTCATTCACCTCGAAGCCACCTTATCCCTCCGGCTCTCAGCGGCTATTTGCGTCATTCAGAACGGACGGTCTTTTCGCGCCTTTAACACTGAAATCCCGACGCGGCCGTGGTATAGTCGTTAAAGTAGATGACGTCGATGCTGATGGAGGTGGAGCGGACGAGTATGATATGGATGATGAGGAGGTAGAGGAAGTTGACAACAAGAAGGACTATGATGTCGAGTATGACCCCTTGGCCGCCGCGATAGCCGCTGCAGGCGGTGGTGGTGATGGAGATATCGCTTTTGTTCAGAGTAAGAGTTTTATATCGACACAAGGATGGGATTCGGATATGGTGGTTGATTATCGGATAAACGAAGATGAGTTTCATAAACTCAGCTTAATGGACTGTGATTTCTTTATCAGAAAACCTCCTGATCCAGATAATGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAGTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTCACTGAACCACCTATTGATGCCCCCAGAGATCCACTGTACAAATCTGAGAGGGAGATATCCAAGGTTTTCTTGACAAAACATTACCGGAACAGAAGGACAAACGATCCAGAATTTGTGCTAGATCTTGAAGAGATATATGTTATTGATTCCAAGACAAAGTCAATCACCAGAGCCAGAGTTCTGGTGACAGTTCCGGGAGGAAGAAAAAGGGATAGGAAGGATGACTTGCTTGTGATACGAGATAATGGAACCTCCTTTAAGATCATACACGTGGGTGAAAGAGATGACCCAACAACGGTAATAGAAAGAGAAGAGTGGACCAAGACTAGAGAAGACATGGAGAAACATCTCAGGAAGCTACGAGACTTCAGTGTCTCAAATTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.38

Weight (kDa)

4.82

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21600 AT1G21600
fragaria_vesca	FvH4_2g27850 FvH4_2g27850 FvH4_2g27850 FvH4_2g27850 FvH4_2g27850
malus_domestica	MD08G1159400.v1.1
prunus_persica	Prupe.1G489500_v2.0.a1 Prupe.1G489500_v2.0.a1 Prupe.1G489500_v2.0.a1
pyrus_communis	pycom348g00030
rosa_chinensis	RchiOBHm_Chr6g0296711
rosa_laevigata	RLG00000011668
rosa_multiflora	Rmu_sc0001741.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171240
rosa_rugosa	Rorug06G0264800
rosa_samantha	Rh6AG376200 Rh6BG384500 Rh6CG389800 Rh6DG377000
rosa_wichuraiana	Rw6G032890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	254, 968
AatII	GACGTC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	194
AccII	CGCG	3 cut(s)	116, 141, 281
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	9 cut(s)	12, 15, 79, 141, 194, 276, 279, 288, 297
AclWI	GGATC	3 cut(s)	449, 620, 695
AcoI	YGGCCR	2 cut(s)	142, 273
AcsI	RAATTY	1 cut(s)	707
AcuI	CTGAAG	1 cut(s)	949
AcvI	CACGTG	1 cut(s)	868
AcyI	GRCGYC	2 cut(s)	5, 171
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	892
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	1 cut(s)	725
AleI	CACNNNNGTG	1 cut(s)	870
AluBI	AGCT	2 cut(s)	417, 955
AluI	AGCT	2 cut(s)	417, 955
Alw26I	GTCTC	2 cut(s)	954, 976
AlwI	GGATC	3 cut(s)	449, 620, 695
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	142, 273
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	707
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	915
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	5 cut(s)	37, 317, 754, 793, 884
AvaII	GGWCC	1 cut(s)	915
BbrPI	CACGTG	1 cut(s)	868
BbsI	GAAGAC	1 cut(s)	936
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	3 cut(s)	176, 302, 351
BceAI	ACGGC	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	954, 976
BfaI	CTAG	3 cut(s)	716, 924, 985
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	7 cut(s)	15, 80, 142, 276, 279, 288, 291
BlsI	GCNGC	7 cut(s)	16, 81, 143, 277, 280, 289, 292
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	1 cut(s)	915
BmgT120I	GGNCC	1 cut(s)	915
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	3 cut(s)	166, 534, 604
BpiI	GAAGAC	1 cut(s)	936
BpuMI	CCSGG	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	868
BsaHI	GRCGYC	2 cut(s)	5, 171
BsaJI	CCNNGG	3 cut(s)	145, 270, 657
BsaWI	WCCGGW	2 cut(s)	502, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	892
Bse3DI	GCAATG	1 cut(s)	576
BseAI	TCCGGA	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	145, 270, 657
BseGI	GGATG	4 cut(s)	217, 362, 590, 823
BseLI	CCNNNNNNNGG	1 cut(s)	892
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	4 cut(s)	89, 427, 633, 961
BseRI	GAGGAG	2 cut(s)	233, 489
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	3 cut(s)	116, 141, 281
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	144, 275
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	4 cut(s)	69, 503, 682, 791
BslI	CCNNNNNNNGG	1 cut(s)	892
BsmAI	GTCTC	2 cut(s)	954, 976
BsnI	GGCC	2 cut(s)	144, 275
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	454, 625, 700, 718, 858
BspACI	CCGC	9 cut(s)	12, 15, 79, 141, 194, 276, 279, 288, 297
BspANI	GGCC	2 cut(s)	144, 275
BspCNI	CTCAG	4 cut(s)	88, 426, 634, 960
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	3 cut(s)	116, 141, 281
BspLI	GGNNCC	1 cut(s)	847
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	3 cut(s)	449, 620, 695
BsrBI	CCGCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	633
BssECI	CCNNGG	3 cut(s)	145, 270, 657
BssMI	GATC	5 cut(s)	454, 625, 700, 718, 858
BssNI	GRCGYC	2 cut(s)	5, 171
BssT1I	CCWWGG	2 cut(s)	270, 657
Bst4CI	ACNGT	5 cut(s)	107, 428, 633, 787, 895
Bst6I	CTCTTC	2 cut(s)	720, 903
BstACI	GRCGYC	2 cut(s)	5, 171
BstAUI	TGTACA	1 cut(s)	633
BstBAI	YACGTR	1 cut(s)	868
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	4 cut(s)	75, 413, 642, 947
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	4 cut(s)	217, 362, 590, 823
BstFNI	CGCG	3 cut(s)	116, 141, 281
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	5 cut(s)	457, 628, 703, 721, 861
BstMAI	GTCTC	2 cut(s)	954, 976
BstMBI	GATC	5 cut(s)	454, 625, 700, 718, 858
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 284, 287
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	3 cut(s)	116, 141, 281
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	2 cut(s)	625, 718
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	625, 718
BstZI	CGGCCG	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	144, 275
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	4 cut(s)	217, 362, 590, 823
BtsIMutI	CAGTG	4 cut(s)	125, 597, 629, 973
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	915
CseI	GACGC	2 cut(s)	78, 147
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	1 cut(s)	934
CviJI	RGCY	9 cut(s)	55, 72, 82, 144, 275, 287, 417, 770, 955
CviKI_1	RGCY	9 cut(s)	55, 72, 82, 144, 275, 287, 417, 770, 955
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	4 cut(s)	75, 413, 642, 947
DpnI	GATC	5 cut(s)	456, 627, 702, 720, 860
DpnII	GATC	5 cut(s)	454, 625, 700, 718, 858
DrdI	GACNNNNNNGTC	2 cut(s)	254, 968
DseDI	GACNNNNNNGTC	2 cut(s)	254, 968
EaeI	YGGCCR	2 cut(s)	142, 273
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	720, 903
EarI	CTCTTC	2 cut(s)	720, 903
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	270, 657
Eco32I	GATATC	2 cut(s)	316, 654
Eco47I	GGWCC	1 cut(s)	915
Eco52I	CGGCCG	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	949
Eco72I	CACGTG	1 cut(s)	868
EcoRV	GATATC	2 cut(s)	316, 654
EcoT14I	CCWWGG	2 cut(s)	270, 657
ErhI	CCWWGG	2 cut(s)	270, 657
FaeI	CATG	1 cut(s)	937
FalI	AAGNNNNNCTT	4 cut(s)	650, 682, 806, 838
FatI	CATG	1 cut(s)	933
Fnu4HI	GCNGC	7 cut(s)	15, 80, 142, 276, 279, 288, 291
FokI	GGATG	4 cut(s)	224, 369, 597, 830
Fsp4HI	GCNGC	7 cut(s)	15, 80, 142, 276, 279, 288, 291
FspBI	CTAG	3 cut(s)	716, 924, 985
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	7 cut(s)	15, 80, 142, 276, 279, 288, 291
HaeIII	GGCC	2 cut(s)	144, 275
HapII	CCGG	4 cut(s)	69, 503, 682, 791
HgaI	GACGC	2 cut(s)	78, 147
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	5, 171
Hin1II	CATG	1 cut(s)	937
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	362, 743
HpaII	CCGG	4 cut(s)	69, 503, 682, 791
HphI	GGTGA	5 cut(s)	37, 317, 754, 793, 884
Hpy166II	GTNNAC	2 cut(s)	235, 915
Hpy188I	TCNGA	8 cut(s)	98, 330, 367, 387, 443, 482, 528, 643
Hpy188III	TCNNGA	8 cut(s)	135, 452, 458, 503, 667, 704, 722, 949
Hpy8I	GTNNAC	2 cut(s)	235, 915
Hpy99I	CGWCG	2 cut(s)	141, 176
HpyAV	CCTTC	4 cut(s)	33, 238, 684, 808
HpyCH4III	ACNGT	5 cut(s)	107, 428, 633, 787, 895
HpyCH4IV	ACGT	2 cut(s)	171, 867
HpyCH4V	TGCA	3 cut(s)	293, 539, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 284, 287
HpyF3I	CTNAG	4 cut(s)	75, 413, 642, 947
HpySE526I	ACGT	2 cut(s)	171, 867
Hsp92I	GRCGYC	2 cut(s)	5, 171
Hsp92II	CATG	1 cut(s)	937
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	454, 625, 700, 718, 858
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	3 cut(s)	166, 534, 604
MaeI	CTAG	3 cut(s)	716, 924, 985
MaeII	ACGT	2 cut(s)	171, 867
MaeIII	GTNAC	5 cut(s)	493, 575, 587, 595, 781
MalI	GATC	5 cut(s)	456, 627, 702, 720, 860
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	5 cut(s)	454, 625, 700, 718, 858
MboII	GAAGA	5 cut(s)	407, 737, 810, 920, 941
MflI	RGATCY	2 cut(s)	625, 718
MluCI	AATT	3 cut(s)	522, 707, 976
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	4 cut(s)	122, 159, 419, 855
MslI	CAYNNNNRTG	3 cut(s)	355, 866, 870
MspA1I	CMGCKG	2 cut(s)	79, 290
MspI	CCGG	4 cut(s)	69, 503, 682, 791
MspR9I	CCNGG	1 cut(s)	792
MvnI	CGCG	3 cut(s)	116, 141, 281
MwoI	GCNNNNNNNGC	3 cut(s)	11, 284, 287
NciI	CCSGG	1 cut(s)	792
NdeII	GATC	5 cut(s)	454, 625, 700, 718, 858
NlaIII	CATG	1 cut(s)	937
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	3 cut(s)	575, 595, 781
OliI	CACNNNNGTG	1 cut(s)	870
PfeI	GAWTC	2 cut(s)	362, 743
PflFI	GACNNNGTC	1 cut(s)	754
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	7 cut(s)	16, 81, 143, 277, 280, 289, 292
PmaCI	CACGTG	1 cut(s)	868
PmlI	CACGTG	1 cut(s)	868
Ppu21I	YACGTR	1 cut(s)	868
PspCI	CACGTG	1 cut(s)	868
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	1 cut(s)	915
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	625, 718
PsyI	GACNNNGTC	1 cut(s)	754
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	3 cut(s)	355, 866, 870
SaqAI	TTAA	4 cut(s)	122, 159, 419, 855
SatI	GCNGC	7 cut(s)	15, 80, 142, 276, 279, 288, 291
Sau3AI	GATC	5 cut(s)	454, 625, 700, 718, 858
Sau96I	GGNCC	1 cut(s)	915
ScrFI	CCNGG	1 cut(s)	792
SfaNI	GCATC	3 cut(s)	166, 534, 604
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	915
SmiMI	CAYNNNNRTG	3 cut(s)	355, 866, 870
Sse9I	AATT	3 cut(s)	522, 707, 976
SsiI	CCGC	9 cut(s)	12, 15, 79, 141, 194, 276, 279, 288, 297
SspMI	CTAG	3 cut(s)	716, 924, 985
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	2 cut(s)	270, 657
TaaI	ACNGT	5 cut(s)	107, 428, 633, 787, 895
TaiI	ACGT	2 cut(s)	174, 870
TaqI	TCGA	5 cut(s)	50, 174, 258, 347, 562
TasI	AATT	3 cut(s)	522, 707, 976
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	6 cut(s)	17, 82, 144, 278, 281, 290
TfiI	GAWTC	2 cut(s)	362, 743
Tru1I	TTAA	4 cut(s)	122, 159, 419, 855
Tru9I	TTAA	4 cut(s)	122, 159, 419, 855
TscAI	CASTG	4 cut(s)	132, 604, 636, 973
TseFI	GTSAC	3 cut(s)	575, 595, 781
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	3 cut(s)	575, 595, 781
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	4 cut(s)	132, 604, 636, 973
Tth111I	GACNNNGTC	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	915
XapI	RAATTY	1 cut(s)	707
XspI	CTAG	3 cut(s)	716, 924, 985
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.