Prupe.1G489500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009190
Physical Location & Seq
Reverse (-)
40751284 .. 40755005
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G489500.3

Sequence Viewer

Length: 1002 bp
ATGAGAGCAACCGCTCTCGTCCTCTCTCCACCACCACTCTCCACACGCACCCCTCTCCTCCTCCTCCACTGTCCGCACCCCCTCCTCCCCTTCCGCTCCCTCAAGCCCAAACCCCTCCCCAAACACCGCCTAATCCTATCCCCGTCCCCAAACACCCCATCCTTCCTCGTCCGGGCCGACGACGGCGACGGTGATAGCGCAGGCCCCGATGACTATGACATGGACGACGAAGAGCTCGAGGAAGTCGACAACAAGAAGGACTTCGACATTGAGTACGACACCCTCGCCGCCGCCGCAGCCGCCGTTGCTGCCGCCAACGGCGAAGAGGACATCGCCATGGTGCAGAGCAAGAGCTTTGTGTTTACGCAAGGCTGGGACTCAGAGATGGTCGTCGATTATCGGATTAACGAAGACGAGTTTCACAAGATTAGCTTGCTCGATTGCGATTTCTTCATAAGGAAGCCCCCCGATCCCGATAACGACGTCTATGATTTCAGAGAGATGTATGTTACTCCTCCGGACACAGATGTTTATGCAATTCCCAGGGTTTTAGCTCCAATGCCTCAGAAGTACATTCGCTGTGCCAAGAGTGATTTTAGCTGCTACAATGTGACAGAGCCACCAATTGATGCTCCTAGAGATCCATTGTATAAGTCTGAGCGGGACGTTTTAAAGGTTTACATGACAAAGCACTACAGGAACCGGAGGTTGCGCGACCCTGATTTTGTTCTGGATTTTGAGGAGATTTATGTGATTGATTCCAAAACAAAATCTATTAGCAGAGCAAAAGTTCTGGTCAGTGTTCCAGGGGGAAGAAGCAGAGATAGAAGGCATGACCTGCTTGTAATACGTGATAATGGCAACTCCTTCAGAATAATTCATGGGAGTGAAAAGGATGATCCCACCACAGTGATAGAGAGGGAAGAGTGGAAGAAGACCAGACAGGACATGGAGAGGCATCTTAGCAAGCTACGGGACTTCAGCGTTTCAAATTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

38.37

Weight (kDa)

5.17

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 846
AccBSI CCGCTC 3 cut(s) 14, 96, 661
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 517
AclWI GGATC 3 cut(s) 464, 635, 893
AcuI CTGAAG 2 cut(s) 853, 964
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 2 cut(s) 275, 572
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 990
AjnI CCWGG 2 cut(s) 542, 805
AleI CACNNNNGTG 1 cut(s) 908
AluBI AGCT 6 cut(s) 235, 354, 432, 554, 600, 970
AluI AGCT 6 cut(s) 235, 354, 432, 554, 600, 970
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 3 cut(s) 464, 635, 893
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 2 cut(s) 174, 202
ApeKI GCWGC 3 cut(s) 296, 308, 600
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 200, 714
AspS9I GGNCC 2 cut(s) 174, 203
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 236
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 417, 941
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 295, 308, 587
BccI CCATC 2 cut(s) 166, 379
BceAI ACGGC 3 cut(s) 199, 287, 334
BciT130I CCWGG 2 cut(s) 544, 807
BcnI CCSGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 1 cut(s) 694
BfuAI ACCTGC 1 cut(s) 846
BisI GCNGC 8 cut(s) 288, 291, 294, 297, 300, 309, 312, 601
BlsI GCNGC 8 cut(s) 289, 292, 295, 298, 301, 310, 313, 602
Bme1390I CCNGG 3 cut(s) 173, 544, 807
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 174, 203
BmiI GGNNCC 2 cut(s) 205, 701
BmrFI CCNGG 3 cut(s) 173, 544, 807
BmsI GCATC 2 cut(s) 619, 967
BpiI GAAGAC 2 cut(s) 417, 941
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 851
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 4 cut(s) 336, 542, 543, 806
BsaWI WCCGGW 2 cut(s) 517, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 2 cut(s) 544, 807
BseDI CCNNGG 4 cut(s) 336, 542, 543, 806
BseGI GGATG 2 cut(s) 158, 901
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 3 cut(s) 393, 578, 648
BseRI GAGGAG 6 cut(s) 47, 50, 53, 74, 504, 755
BseXI GCAGC 3 cut(s) 295, 308, 587
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 2 cut(s) 176, 204
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 3 cut(s) 172, 518, 703
BslFI GGGAC 4 cut(s) 130, 389, 677, 989
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 4 cut(s) 130, 389, 677, 989
BsnI GGCC 2 cut(s) 176, 204
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 3 cut(s) 469, 640, 898
Bsp19I CCATGG 1 cut(s) 336
BspANI GGCC 2 cut(s) 176, 204
BspCNI CTCAG 3 cut(s) 392, 577, 649
BspEI TCCGGA 1 cut(s) 517
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 2 cut(s) 205, 701
BspMI ACCTGC 1 cut(s) 846
BspPI GGATC 3 cut(s) 464, 635, 893
BspQI GCTCTTC 1 cut(s) 225
BsrBI CCGCTC 3 cut(s) 14, 96, 661
BssECI CCNNGG 4 cut(s) 336, 542, 543, 806
BssMI GATC 3 cut(s) 469, 640, 898
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 544, 807
Bst4CI ACNGT 3 cut(s) 71, 191, 910
Bst6I CTCTTC 3 cut(s) 225, 318, 918
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 838
BstBAI YACGTR 1 cut(s) 851
BstC8I GCNNGC 3 cut(s) 202, 434, 968
BstDEI CTNAG 4 cut(s) 379, 564, 657, 962
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 158, 901
BstFNI CGCG 1 cut(s) 714
BstHHI GCGC 2 cut(s) 200, 714
BstKTI GATC 3 cut(s) 472, 643, 901
BstMBI GATC 3 cut(s) 469, 640, 898
BstMWI GCNNNNNNNGC 6 cut(s) 293, 296, 299, 305, 308, 838
BstNI CCWGG 2 cut(s) 544, 807
BstSCI CCNGG 3 cut(s) 171, 542, 805
BstSFI CTRYAG 1 cut(s) 694
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 3 cut(s) 295, 308, 587
BstV2I GAAGAC 2 cut(s) 417, 941
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 2 cut(s) 176, 204
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 158, 901
BtsIMutI CAGTG 3 cut(s) 67, 805, 915
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 3 cut(s) 202, 434, 968
CfoI GCGC 2 cut(s) 200, 714
Cfr13I GGNCC 2 cut(s) 174, 203
Csp6I GTAC 2 cut(s) 274, 571
CviAII CATG 6 cut(s) 220, 337, 682, 833, 881, 949
CviQI GTAC 2 cut(s) 274, 571
DdeI CTNAG 4 cut(s) 379, 564, 657, 962
DpnI GATC 3 cut(s) 471, 642, 900
DpnII GATC 3 cut(s) 469, 640, 898
DraI TTTAAA 1 cut(s) 672
Eam1104I CTCTTC 3 cut(s) 225, 318, 918
EarI CTCTTC 3 cut(s) 225, 318, 918
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 853, 964
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 542, 805
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 6 cut(s) 223, 340, 685, 836, 884, 952
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 416, 448
FaqI GGGAC 4 cut(s) 130, 389, 677, 989
FatI CATG 6 cut(s) 219, 336, 681, 832, 880, 948
FauI CCCGC 1 cut(s) 654
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 288, 291, 294, 297, 300, 309, 312, 601
FokI GGATG 2 cut(s) 145, 908
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 8 cut(s) 288, 291, 294, 297, 300, 309, 312, 601
FspBI CTAG 1 cut(s) 636
GlaI GCGC 2 cut(s) 199, 713
GluI GCNGC 8 cut(s) 288, 291, 294, 297, 300, 309, 312, 601
GsaI CCCAGC 1 cut(s) 376
HaeIII GGCC 2 cut(s) 176, 204
HapII CCGG 3 cut(s) 172, 518, 703
HhaI GCGC 2 cut(s) 200, 714
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 6 cut(s) 223, 340, 685, 836, 884, 952
Hin6I GCGC 2 cut(s) 198, 712
HinP1I GCGC 2 cut(s) 198, 712
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 377, 758
HpaII CCGG 3 cut(s) 172, 518, 703
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 3 cut(s) 247, 363, 679
Hpy188I TCNGA 6 cut(s) 382, 402, 497, 567, 658, 872
Hpy188III TCNNGA 3 cut(s) 473, 518, 731
Hpy8I GTNNAC 3 cut(s) 247, 363, 679
Hpy99I CGWCG 6 cut(s) 182, 185, 191, 230, 395, 485
HpyAV CCTTC 5 cut(s) 100, 172, 250, 822, 877
HpyCH4III ACNGT 3 cut(s) 71, 191, 910
HpyCH4IV ACGT 3 cut(s) 483, 666, 850
HpyCH4V TGCA 2 cut(s) 343, 536
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 296, 299, 305, 308, 838
HpyF3I CTNAG 4 cut(s) 379, 564, 657, 962
HpySE526I ACGT 3 cut(s) 483, 666, 850
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 6 cut(s) 223, 340, 685, 836, 884, 952
HspAI GCGC 2 cut(s) 198, 712
Kpn2I TCCGGA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 469, 640, 898
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 3 cut(s) 101, 559, 637
Lsp1109I GCAGC 3 cut(s) 295, 308, 587
LweI GCATC 2 cut(s) 619, 967
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 483, 666, 850
MaeIII GTNAC 2 cut(s) 508, 610
MalI GATC 3 cut(s) 471, 642, 900
MbiI CCGCTC 3 cut(s) 14, 96, 661
MboI GATC 3 cut(s) 469, 640, 898
MboII GAAGA 8 cut(s) 242, 335, 422, 442, 825, 935, 943, 946
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 4 cut(s) 537, 624, 876, 991
MlyI GAGTC 1 cut(s) 371
MroI TCCGGA 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 405, 671
MslI CAYNNNNRTG 3 cut(s) 335, 885, 908
MspI CCGG 3 cut(s) 172, 518, 703
MspR9I CCNGG 3 cut(s) 173, 544, 807
MunI CAATTG 1 cut(s) 624
MvaI CCWGG 2 cut(s) 544, 807
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 6 cut(s) 293, 296, 299, 305, 308, 838
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 1 cut(s) 336
NdeII GATC 3 cut(s) 469, 640, 898
NlaIII CATG 6 cut(s) 223, 340, 685, 836, 884, 952
NlaIV GGNNCC 2 cut(s) 205, 701
NmuCI GTSAC 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 908
PaeR7I CTCGAG 1 cut(s) 236
PasI CCCWGGG 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 234, 243
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 758
PkrI GCNGC 8 cut(s) 289, 292, 295, 298, 301, 310, 313, 602
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 542, 805
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 2 cut(s) 542, 805
PspN4I GGNNCC 2 cut(s) 205, 701
PspPI GGNCC 2 cut(s) 174, 203
PspXI VCTCGAGB 1 cut(s) 236
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 2 cut(s) 275, 572
RsaNI GTAC 2 cut(s) 274, 571
RseI CAYNNNNRTG 3 cut(s) 335, 885, 908
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 405, 671
SatI GCNGC 8 cut(s) 288, 291, 294, 297, 300, 309, 312, 601
Sau3AI GATC 3 cut(s) 469, 640, 898
Sau96I GGNCC 2 cut(s) 174, 203
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 173, 544, 807
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 619, 967
SfcI CTRYAG 1 cut(s) 694
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 3 cut(s) 335, 885, 908
SmlI CTYRAG 2 cut(s) 101, 236
SmoI CTYRAG 2 cut(s) 101, 236
Sse9I AATT 4 cut(s) 537, 624, 876, 991
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 171, 542, 805
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 71, 191, 910
TaiI ACGT 3 cut(s) 486, 669, 853
TaqI TCGA 5 cut(s) 237, 246, 264, 393, 438
TasI AATT 4 cut(s) 537, 624, 876, 991
TatI WGTACW 1 cut(s) 570
TauI GCSGC 5 cut(s) 290, 293, 296, 302, 314
TfiI GAWTC 1 cut(s) 758
Tru1I TTAA 2 cut(s) 405, 671
Tru9I TTAA 2 cut(s) 405, 671
TscAI CASTG 3 cut(s) 74, 805, 915
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 296, 308, 600
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 2 cut(s) 442, 869
TspRI CASTG 3 cut(s) 74, 805, 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 636
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.