Rw6G032890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009190
Physical Location & Seq
Forward (+)
57123827 .. 57126501
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032890.1

Sequence Viewer

Length: 993 bp
ATGAGAGCCACCGCTCTCTTCCTCCCTCCGCCGCCGCCGCCATTCTTCACCCACAAACCTCTCTTCACACCCACCACACCTCTCCTCCTCCACTCTTCCCACCCCCTCCCTTTCCGCTCCCTCAAACCCAAACCCGCCCTCAACCGCCCCTCCTTCCTCGTCCGCGCCGACGACGGCGACGCCGACGGAGGCGGCCCCGACGACTACGACATGGACGTTGAGGAGCTGGAGGAGGTCGACAACAAGAAGGACTTCGACATCGAGTACGACCCCCTCGCCGGCGCCTCCGCCGCAGTCGACGCCGCCGACGGTGATGTCGACATCGCCATGGTGCCGAGCAAGAGCTTCGTGTTCACGCAGGGCTGGGACTCCGAGATGGTGGTGGATTATCGGATCAACGAGGACGAGTTTCACAAGATTAGTTTGCTCGATTGCGATTTCTTTATACGGAAACCGCCGGACCCCGATAACGACGTCTTCGATTTCAGAGAGATGTATGTTACTCCTCCGGATACAGATGTTTATGCCATTCCTAGGGTTTTAGCTCCAATGCCTGACAAGTACATTCGATGCGCCCAGAGTGAATTTAGCTGCTACAATGTGACGGAACCGCCCATTGATGCTCCTAGAGACCCATTGTACAAGACCGAGAGGGACGTTTTTAAGGTTTATTTGACAAAGCACTACAGGAACCGGCGCTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTACGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGCAAAAGTCCTGGTCAGTGTTCCGGGGGGAAGAACCAGAGATAGAAGACATGATCTGCTTGTAATACGTGACAATGGCAACTCCTTCAGAATAGTTCATGCGAGTGAAAAAGATGATCCCACCACAGTGATAGAGAGGGAAGAGTGGAATAAGACCAGAAAGGACATGGAGAGACATCTTAGCAAGCTACGTGATTTCCCAGTTTCAAATTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.97

Weight (kDa)

4.93

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
AatII GACGTC 1 cut(s) 477
AccB1I GGYRCC 2 cut(s) 281, 331
AccBSI CCGCTC 2 cut(s) 14, 117
AccI GTMKAC 3 cut(s) 237, 297, 318
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 508
AclWI GGATC 2 cut(s) 401, 884
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 844
AcyI GRCGYC 4 cut(s) 180, 282, 300, 474
AfaI GTAC 4 cut(s) 266, 563, 641, 720
AfiI CCNNNNNNNGG 3 cut(s) 278, 534, 700
AgsI TTSAA 2 cut(s) 731, 981
AjnI CCWGG 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AleI CACNNNNGTG 1 cut(s) 899
AluBI AGCT 5 cut(s) 226, 345, 545, 591, 961
AluI AGCT 5 cut(s) 226, 345, 545, 591, 961
Alw26I GTCTC 3 cut(s) 624, 699, 940
AlwI GGATC 2 cut(s) 401, 884
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 591
ApoI RAATTY 1 cut(s) 584
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
Asp700I GAANNNNTTC 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 4 cut(s) 167, 284, 575, 699
AspS9I GGNCC 2 cut(s) 194, 460
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 2 cut(s) 40, 323
AvaII GGWCC 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 533
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanI GGYRCC 2 cut(s) 281, 331
BbsI GAAGAC 2 cut(s) 469, 826
BbvI GCAGC 1 cut(s) 578
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 3 cut(s) 624, 699, 940
BfaI CTAG 3 cut(s) 534, 627, 991
BfmI CTRYAG 1 cut(s) 685
BfoI RGCGCY 2 cut(s) 285, 700
BfuI GTATCC 1 cut(s) 505
BisI GCNGC 7 cut(s) 32, 35, 38, 193, 291, 303, 592
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 7 cut(s) 33, 36, 39, 194, 292, 304, 593
Bme1390I CCNGG 2 cut(s) 785, 798
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 194, 460
BmiI GGNNCC 6 cut(s) 196, 283, 333, 462, 609, 692
BmrFI CCNGG 2 cut(s) 785, 798
BmrI ACTGGG 1 cut(s) 968
BmsI GCATC 2 cut(s) 560, 610
BmuI ACTGGG 1 cut(s) 968
BpiI GAAGAC 2 cut(s) 469, 826
BpmI CTGGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 798
BsaAI YACGTR 3 cut(s) 742, 842, 965
BsaHI GRCGYC 4 cut(s) 180, 282, 300, 474
BsaI GGTCTC 2 cut(s) 624, 699
BsaJI CCNNGG 3 cut(s) 327, 533, 797
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 534, 700
Bse118I RCCGGY 2 cut(s) 278, 693
Bse1I ACTGG 2 cut(s) 726, 974
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 3 cut(s) 327, 533, 797
BseLI CCNNNNNNNGG 3 cut(s) 278, 534, 700
BseNI ACTGG 2 cut(s) 726, 974
BseRI GAGGAG 5 cut(s) 74, 77, 236, 245, 495
BseXI GCAGC 1 cut(s) 578
BseYI CCCAGC 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 2 cut(s) 281, 331
BsiSI CCGG 5 cut(s) 279, 458, 509, 694, 797
BslFI GGGAC 2 cut(s) 380, 668
BslI CCNNNNNNNGG 3 cut(s) 278, 534, 700
BsmAI GTCTC 3 cut(s) 624, 699, 940
BsmFI GGGAC 2 cut(s) 380, 668
BsnI GGCC 1 cut(s) 195
Bso31I GGTCTC 2 cut(s) 624, 699
Bsp13I TCCGGA 1 cut(s) 508
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 3 cut(s) 393, 826, 889
Bsp19I CCATGG 1 cut(s) 327
BspANI GGCC 1 cut(s) 195
BspEI TCCGGA 1 cut(s) 508
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 6 cut(s) 196, 283, 333, 462, 609, 692
BspPI GGATC 2 cut(s) 401, 884
BspT107I GGYRCC 2 cut(s) 281, 331
BspTNI GGTCTC 2 cut(s) 624, 699
BsrBI CCGCTC 2 cut(s) 14, 117
BsrFI RCCGGY 2 cut(s) 278, 693
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 2 cut(s) 726, 974
BssAI RCCGGY 2 cut(s) 278, 693
BssECI CCNNGG 3 cut(s) 327, 533, 797
BssMI GATC 3 cut(s) 393, 826, 889
BssNI GRCGYC 4 cut(s) 180, 282, 300, 474
BssT1I CCWWGG 2 cut(s) 327, 533
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 311, 901
Bst6I CTCTTC 5 cut(s) 23, 68, 100, 726, 909
BstACI GRCGYC 4 cut(s) 180, 282, 300, 474
BstAUI TGTACA 1 cut(s) 639
BstBAI YACGTR 3 cut(s) 742, 842, 965
BstC8I GCNNGC 2 cut(s) 280, 959
BstDEI CTNAG 1 cut(s) 953
BstDSI CCRYGG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 2 cut(s) 285, 700
BstHHI GCGC 4 cut(s) 167, 284, 575, 699
BstKTI GATC 3 cut(s) 396, 829, 892
BstMAI GTCTC 3 cut(s) 624, 699, 940
BstMBI GATC 3 cut(s) 393, 826, 889
BstMWI GCNNNNNNNGC 3 cut(s) 37, 290, 299
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 2 cut(s) 783, 796
BstSFI CTRYAG 1 cut(s) 685
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 2 cut(s) 469, 826
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 796, 906
Cac8I GCNNGC 2 cut(s) 280, 959
CfoI GCGC 4 cut(s) 167, 284, 575, 699
Cfr10I RCCGGY 2 cut(s) 278, 693
Cfr13I GGNCC 2 cut(s) 194, 460
CseI GACGC 2 cut(s) 188, 308
Csp6I GTAC 4 cut(s) 265, 562, 640, 719
CviAII CATG 5 cut(s) 211, 328, 824, 872, 940
CviJI RGCY 8 cut(s) 8, 195, 226, 345, 363, 545, 591, 961
CviKI_1 RGCY 8 cut(s) 8, 195, 226, 345, 363, 545, 591, 961
CviQI GTAC 4 cut(s) 265, 562, 640, 719
DdeI CTNAG 1 cut(s) 953
DinI GGCGCC 1 cut(s) 283
DpnI GATC 3 cut(s) 395, 828, 891
DpnII GATC 3 cut(s) 393, 826, 889
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
Eam1104I CTCTTC 5 cut(s) 23, 68, 100, 726, 909
EarI CTCTTC 5 cut(s) 23, 68, 100, 726, 909
EciI GGCGGA 2 cut(s) 18, 277
Eco130I CCWWGG 2 cut(s) 327, 533
Eco31I GGTCTC 2 cut(s) 624, 699
Eco47I GGWCC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 2 cut(s) 327, 533
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 327, 533
FaeI CATG 5 cut(s) 214, 331, 827, 875, 943
FaiI YATR 8 cut(s) 212, 329, 446, 498, 525, 825, 873, 941
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 380, 668
FatI CATG 5 cut(s) 210, 327, 823, 871, 939
FauI CCCGC 1 cut(s) 142
FblI GTMKAC 3 cut(s) 237, 297, 318
Fnu4HI GCNGC 7 cut(s) 32, 35, 38, 193, 291, 303, 592
Fsp4HI GCNGC 7 cut(s) 32, 35, 38, 193, 291, 303, 592
FspBI CTAG 3 cut(s) 534, 627, 991
GlaI GCGC 4 cut(s) 166, 283, 574, 698
GluI GCNGC 7 cut(s) 32, 35, 38, 193, 291, 303, 592
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 2 cut(s) 285, 700
HaeIII GGCC 1 cut(s) 195
HapII CCGG 5 cut(s) 279, 458, 509, 694, 797
HgaI GACGC 2 cut(s) 188, 308
HhaI GCGC 4 cut(s) 167, 284, 575, 699
Hin1I GRCGYC 4 cut(s) 180, 282, 300, 474
Hin1II CATG 5 cut(s) 214, 331, 827, 875, 943
Hin6I GCGC 4 cut(s) 165, 282, 573, 697
HinP1I GCGC 4 cut(s) 165, 282, 573, 697
HincII GTYRAC 3 cut(s) 238, 298, 319
HindII GTYRAC 3 cut(s) 238, 298, 319
HinfI GANTC 2 cut(s) 368, 749
HpaII CCGG 5 cut(s) 279, 458, 509, 694, 797
HphI GGTGA 2 cut(s) 40, 323
Hpy166II GTNNAC 4 cut(s) 238, 298, 319, 354
Hpy188I TCNGA 4 cut(s) 373, 393, 488, 863
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 4 cut(s) 238, 298, 319, 354
Hpy99I CGWCG 8 cut(s) 173, 176, 182, 188, 203, 302, 311, 476
HpyAV CCTTC 3 cut(s) 163, 241, 868
HpyCH4III ACNGT 2 cut(s) 311, 901
HpyCH4IV ACGT 6 cut(s) 216, 474, 657, 741, 841, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 290, 299
HpyF3I CTNAG 1 cut(s) 953
HpySE526I ACGT 6 cut(s) 216, 474, 657, 741, 841, 964
Hsp92I GRCGYC 4 cut(s) 180, 282, 300, 474
Hsp92II CATG 5 cut(s) 214, 331, 827, 875, 943
HspAI GCGC 4 cut(s) 165, 282, 573, 697
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 508
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 393, 826, 889
LmnI GCTCC 4 cut(s) 122, 223, 550, 628
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 2 cut(s) 560, 610
MaeI CTAG 3 cut(s) 534, 627, 991
MaeII ACGT 6 cut(s) 216, 474, 657, 741, 841, 964
MaeIII GTNAC 3 cut(s) 499, 601, 842
MalI GATC 3 cut(s) 395, 828, 891
MbiI CCGCTC 2 cut(s) 14, 117
MboI GATC 3 cut(s) 393, 826, 889
MboII GAAGA 9 cut(s) 10, 37, 55, 87, 469, 743, 816, 831, 926
MluCI AATT 2 cut(s) 584, 982
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 362
MreI CGCCGGCG 1 cut(s) 278
MroI TCCGGA 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 3 cut(s) 326, 876, 899
MspI CCGG 5 cut(s) 279, 458, 509, 694, 797
MspR9I CCNGG 2 cut(s) 785, 798
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 37, 290, 299
NaeI GCCGGC 1 cut(s) 280
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 1 cut(s) 798
NcoI CCATGG 1 cut(s) 327
NdeII GATC 3 cut(s) 393, 826, 889
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 5 cut(s) 214, 331, 827, 875, 943
NlaIV GGNNCC 6 cut(s) 196, 283, 333, 462, 609, 692
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 601, 842
OliI CACNNNNGTG 1 cut(s) 899
PcsI WCGNNNNNNNCGW 6 cut(s) 165, 180, 213, 303, 315, 477
PdiI GCCGGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 749
PflFI GACNNNGTC 1 cut(s) 760
PkrI GCNGC 7 cut(s) 33, 36, 39, 194, 292, 304, 593
PleI GAGTC 1 cut(s) 362
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 362
Ppu21I YACGTR 3 cut(s) 742, 842, 965
Psp6I CCWGG 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 6 cut(s) 196, 283, 333, 462, 609, 692
PspPI GGNCC 2 cut(s) 194, 460
PsyI GACNNNGTC 1 cut(s) 760
RsaI GTAC 4 cut(s) 266, 563, 641, 720
RsaNI GTAC 4 cut(s) 265, 562, 640, 719
RseI CAYNNNNRTG 3 cut(s) 326, 876, 899
SalI GTCGAC 3 cut(s) 236, 296, 317
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 7 cut(s) 32, 35, 38, 193, 291, 303, 592
Sau3AI GATC 3 cut(s) 393, 826, 889
Sau96I GGNCC 2 cut(s) 194, 460
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 785, 798
SfaNI GCATC 2 cut(s) 560, 610
SfcI CTRYAG 1 cut(s) 685
SfoI GGCGCC 1 cut(s) 283
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 3 cut(s) 326, 876, 899
Sse9I AATT 2 cut(s) 584, 982
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 3 cut(s) 534, 627, 991
StyD4I CCNGG 2 cut(s) 783, 796
StyI CCWWGG 2 cut(s) 327, 533
TaaI ACNGT 2 cut(s) 311, 901
TaiI ACGT 6 cut(s) 219, 477, 660, 744, 844, 967
TaqI TCGA 8 cut(s) 237, 255, 261, 297, 318, 429, 480, 568
TaqII GACCGA 1 cut(s) 662
TasI AATT 2 cut(s) 584, 982
TatI WGTACW 3 cut(s) 561, 639, 718
TauI GCSGC 6 cut(s) 34, 37, 40, 195, 293, 305
TfiI GAWTC 1 cut(s) 749
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 796, 906
TseFI GTSAC 2 cut(s) 601, 842
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 2 cut(s) 601, 842
TspDTI ATGAA 1 cut(s) 860
TspGWI ACGGA 3 cut(s) 201, 463, 620
TspRI CASTG 2 cut(s) 796, 906
Tth111I GACNNNGTC 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 2 cut(s) 937, 981
XmaJI CCTAGG 1 cut(s) 533
XmiI GTMKAC 3 cut(s) 237, 297, 318
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 3 cut(s) 534, 627, 991
ZraI GACGTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.