Rh6BG384500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009190
Physical Location & Seq
Forward (+)
61308095 .. 61310916
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG384500.1

Sequence Viewer

Length: 831 bp
ATGAGAGCCACCGCTCTCTTCCTCTCTCCGCCGCCGCCGCCGCTGCTCTTCACCCACAAACCTCTCTTCACACCCACCACACCTCTCCTCCTCCACTCTTCCCACCCCCTCCCTTTCCGCTCCCTCAAACCCAAACCCGCCCTCAACCGCCCCTCCTTCCTCGTCCGCGCCGACGACGGCGACGCCGACGGAGGCGGCCCCGACGACTACGACATGGACGTTGAGGAGCTCGAGGAGGTCGACAACAAGAAGGACTTCGACATCGAGTACGACCCCCTCGCCGGCGCCTCCGCCGCAGTCGACGCCGCCGCCAACGGTGATGTCGACATCGCCATGGTGCCGAGCAAGAGCTTCGTGTTCACGCAGGGCTGGGACTCCGAGATGGTGGTGGATTATCGGATCAACGAGGACGAGTTTCACAAGATTAGTTTGCTCGATTGCGATTTCTTTATACGGAAACCGCCGGACCCCGATAACGACGTCTTCGATTTCAGAGAGATGTATGTTACTCCTCCGGATACAGATGTTTATGCCATTCCTAGGGTTTTAGCTCCAATGCCTGACAAGTACATTCGATGCGCCCAGAGTGAATTTAGCTGCTACAATGTGACGGAACCGCCCATTGATGCTCCTAGAGACCCATTGTACAAGACCGAGAGGGACGTTTTTAAGGTTTATTTGACAAAGCACTACAGGAACCGGCGCTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTATGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGCAAAAGTCCTGGTGAGAGTTCTATGTTTTATGTTTTGCTCTCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.44

Weight (kDa)

4.65

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 284, 337
AccBSI CCGCTC 2 cut(s) 14, 120
AccI GTMKAC 3 cut(s) 240, 300, 324
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 514
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 590
AcyI GRCGYC 4 cut(s) 183, 285, 303, 480
AfaI GTAC 4 cut(s) 269, 569, 647, 726
AfiI CCNNNNNNNGG 3 cut(s) 281, 540, 706
AgsI TTSAA 1 cut(s) 737
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AluBI AGCT 4 cut(s) 229, 351, 551, 597
AluI AGCT 4 cut(s) 229, 351, 551, 597
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 630, 705
AlwI GGATC 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 43, 597
ApoI RAATTY 1 cut(s) 590
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 254
AspA2I CCTAGG 1 cut(s) 539
AspLEI GCGC 4 cut(s) 170, 287, 581, 705
AspS9I GGNCC 2 cut(s) 197, 466
AsuHPI GGTGA 3 cut(s) 43, 329, 805
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 466
AvrII CCTAGG 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanI GGYRCC 2 cut(s) 284, 337
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 30, 584
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 791
BciVI GTATCC 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 630, 705
BfaI CTAG 2 cut(s) 540, 633
BfmI CTRYAG 1 cut(s) 691
BfoI RGCGCY 2 cut(s) 288, 706
BfuI GTATCC 1 cut(s) 511
BlnI CCTAGG 1 cut(s) 539
Bme1390I CCNGG 1 cut(s) 791
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 197, 466
BmiI GGNNCC 6 cut(s) 199, 286, 339, 468, 615, 698
BmrFI CCNGG 1 cut(s) 791
BmsI GCATC 2 cut(s) 566, 616
BpiI GAAGAC 1 cut(s) 475
BsaHI GRCGYC 4 cut(s) 183, 285, 303, 480
BsaI GGTCTC 2 cut(s) 630, 705
BsaJI CCNNGG 2 cut(s) 333, 539
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 540, 706
Bse118I RCCGGY 2 cut(s) 281, 699
Bse1I ACTGG 1 cut(s) 732
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 2 cut(s) 333, 539
BseLI CCNNNNNNNGG 3 cut(s) 281, 540, 706
BseNI ACTGG 1 cut(s) 732
BseRI GAGGAG 5 cut(s) 77, 80, 239, 248, 501
BseXI GCAGC 2 cut(s) 30, 584
BseYI CCCAGC 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 2 cut(s) 284, 337
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 4 cut(s) 282, 464, 515, 700
BslFI GGGAC 2 cut(s) 386, 674
BslI CCNNNNNNNGG 3 cut(s) 281, 540, 706
BsmAI GTCTC 2 cut(s) 630, 705
BsmFI GGGAC 2 cut(s) 386, 674
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 2 cut(s) 630, 705
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 1 cut(s) 198
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 6 cut(s) 199, 286, 339, 468, 615, 698
BspPI GGATC 1 cut(s) 407
BspQI GCTCTTC 1 cut(s) 53
BspT107I GGYRCC 2 cut(s) 284, 337
BspTNI GGTCTC 2 cut(s) 630, 705
BsrBI CCGCTC 2 cut(s) 14, 120
BsrFI RCCGGY 2 cut(s) 281, 699
BsrGI TGTACA 1 cut(s) 645
BsrI ACTGG 1 cut(s) 732
BssAI RCCGGY 2 cut(s) 281, 699
BssECI CCNNGG 2 cut(s) 333, 539
BssMI GATC 1 cut(s) 399
BssNI GRCGYC 4 cut(s) 183, 285, 303, 480
BssT1I CCWWGG 2 cut(s) 333, 539
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 5 cut(s) 23, 53, 71, 103, 732
BstACI GRCGYC 4 cut(s) 183, 285, 303, 480
BstAUI TGTACA 1 cut(s) 645
BstC8I GCNNGC 1 cut(s) 283
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 2 cut(s) 288, 706
BstHHI GCGC 4 cut(s) 170, 287, 581, 705
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 2 cut(s) 630, 705
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 5 cut(s) 37, 40, 43, 293, 302
BstNI CCWGG 1 cut(s) 791
BstSCI CCNGG 1 cut(s) 789
BstSFI CTRYAG 1 cut(s) 691
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 30, 584
BstV2I GAAGAC 1 cut(s) 475
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 4 cut(s) 170, 287, 581, 705
Cfr10I RCCGGY 2 cut(s) 281, 699
Cfr13I GGNCC 2 cut(s) 197, 466
CseI GACGC 2 cut(s) 191, 311
Csp6I GTAC 4 cut(s) 268, 568, 646, 725
CviAII CATG 2 cut(s) 214, 334
CviJI RGCY 7 cut(s) 8, 198, 229, 351, 369, 551, 597
CviKI_1 RGCY 7 cut(s) 8, 198, 229, 351, 369, 551, 597
CviQI GTAC 4 cut(s) 268, 568, 646, 725
DinI GGCGCC 1 cut(s) 286
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eam1104I CTCTTC 5 cut(s) 23, 53, 71, 103, 732
EarI CTCTTC 5 cut(s) 23, 53, 71, 103, 732
EciI GGCGGA 2 cut(s) 18, 280
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 333, 539
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 2 cut(s) 630, 705
Eco47I GGWCC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 2 cut(s) 333, 539
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 2 cut(s) 333, 539
FaeI CATG 2 cut(s) 217, 337
FaiI YATR 8 cut(s) 215, 335, 452, 504, 531, 747, 805, 812
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 2 cut(s) 386, 674
FatI CATG 2 cut(s) 213, 333
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 3 cut(s) 240, 300, 324
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 2 cut(s) 540, 633
GlaI GCGC 4 cut(s) 169, 286, 580, 704
GsaI CCCAGC 1 cut(s) 373
HaeII RGCGCY 2 cut(s) 288, 706
HaeIII GGCC 1 cut(s) 198
HapII CCGG 4 cut(s) 282, 464, 515, 700
HgaI GACGC 2 cut(s) 191, 311
HhaI GCGC 4 cut(s) 170, 287, 581, 705
Hin1I GRCGYC 4 cut(s) 183, 285, 303, 480
Hin1II CATG 2 cut(s) 217, 337
Hin6I GCGC 4 cut(s) 168, 285, 579, 703
HinP1I GCGC 4 cut(s) 168, 285, 579, 703
HincII GTYRAC 3 cut(s) 241, 301, 325
HindII GTYRAC 3 cut(s) 241, 301, 325
HinfI GANTC 2 cut(s) 374, 755
HpaII CCGG 4 cut(s) 282, 464, 515, 700
HphI GGTGA 3 cut(s) 43, 329, 805
Hpy166II GTNNAC 4 cut(s) 241, 301, 325, 360
Hpy188I TCNGA 3 cut(s) 379, 399, 494
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 4 cut(s) 241, 301, 325, 360
Hpy99I CGWCG 7 cut(s) 176, 179, 185, 191, 206, 305, 482
HpyAV CCTTC 2 cut(s) 166, 244
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 3 cut(s) 219, 480, 663
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 40, 43, 293, 302
HpySE526I ACGT 3 cut(s) 219, 480, 663
Hsp92I GRCGYC 4 cut(s) 183, 285, 303, 480
Hsp92II CATG 2 cut(s) 217, 337
HspAI GCGC 4 cut(s) 168, 285, 579, 703
KasI GGCGCC 1 cut(s) 284
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 399
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 4 cut(s) 125, 226, 556, 634
Lsp1109I GCAGC 2 cut(s) 30, 584
LweI GCATC 2 cut(s) 566, 616
MaeI CTAG 2 cut(s) 540, 633
MaeII ACGT 3 cut(s) 219, 480, 663
MaeIII GTNAC 2 cut(s) 505, 607
MalI GATC 1 cut(s) 401
MbiI CCGCTC 2 cut(s) 14, 120
MboI GATC 1 cut(s) 399
MboII GAAGA 6 cut(s) 10, 40, 58, 90, 475, 749
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 590, 826
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 1 cut(s) 368
MreI CGCCGGCG 1 cut(s) 281
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 4 cut(s) 282, 464, 515, 700
MspR9I CCNGG 1 cut(s) 791
MvaI CCWGG 1 cut(s) 791
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 37, 40, 43, 293, 302
NaeI GCCGGC 1 cut(s) 283
NarI GGCGCC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 333
NdeII GATC 1 cut(s) 399
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 217, 337
NlaIV GGNNCC 6 cut(s) 199, 286, 339, 468, 615, 698
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 6 cut(s) 168, 183, 216, 237, 321, 483
PdiI GCCGGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 755
PflFI GACNNNGTC 1 cut(s) 766
PleI GAGTC 1 cut(s) 368
PluTI GGCGCC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 6 cut(s) 199, 286, 339, 468, 615, 698
PspPI GGNCC 2 cut(s) 197, 466
PspXI VCTCGAGB 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 766
RsaI GTAC 4 cut(s) 269, 569, 647, 726
RsaNI GTAC 4 cut(s) 268, 568, 646, 725
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 231
SalI GTCGAC 3 cut(s) 239, 299, 323
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 669
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 197, 466
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 791
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 566, 616
SfcI CTRYAG 1 cut(s) 691
SfoI GGCGCC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 230
SgrAI CRCCGGYG 1 cut(s) 281
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 590, 826
SspDI GGCGCC 1 cut(s) 284
SspMI CTAG 2 cut(s) 540, 633
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 789
StyI CCWWGG 2 cut(s) 333, 539
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 3 cut(s) 222, 483, 666
TaqI TCGA 9 cut(s) 231, 240, 258, 264, 300, 324, 435, 486, 574
TaqII GACCGA 1 cut(s) 668
TasI AATT 2 cut(s) 590, 826
TatI WGTACW 3 cut(s) 567, 645, 724
TauI GCSGC 8 cut(s) 34, 37, 40, 43, 198, 296, 308, 311
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 43, 597
Tsp45I GTSAC 1 cut(s) 607
TspGWI ACGGA 3 cut(s) 204, 469, 626
Tth111I GACNNNGTC 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 1 cut(s) 590
XhoI CTCGAG 1 cut(s) 230
XmaJI CCTAGG 1 cut(s) 539
XmiI GTMKAC 3 cut(s) 240, 300, 324
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 2 cut(s) 540, 633
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.