Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009190

Physical Location & Seq

Genomic Coordinates Reverse (-)

41096759 .. 41101011

Gene Structure 4253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCGCGGCCCTTCGAGGCTTCCAACGCCAGACGTGTATGCATCAATTGCTTCTCTCTCCATCCTCTCTCAGGATTATTACATAGATGTTGATTATCAAGTGGGTGATGGCTTCTCTTTCAGTGGAGTACTAGTAACTGAGGAAGTGGGTAAGTTTTTGACAGGAAAGTATTCATATGGACCAAGCCCTTCTGATGAATGGTTCAAGCAGGGGAAGATAGTGCTTATATTTCTCTTGGTTCTGGTGAGAAGGTCCGATCTTGGACTTGCAATGGGTGCTGATTCTCAGGCAGCTGCTGATGTTTTTAGAGCATTGTCAGTCATGGGGTTGAAAAGCCAGCTATCCAGTGATGATGAACTTCTGGTTATTCGTCTTTGGAAGGTTGACTTTGTTCGTTGTTTTGAAGTTGAGCAGCAGAATAGGCGAACACTACCAAGCTTCACTCTTCTTACCGATCAGAAATCATCTTCAATACTGCAAGAGAGGATGATGAGCATGGTAATGAAAAGCAATTCCTCCAGGCTACTTATGGAACACACCGATTCACCTGGACTGACCTCAAACACAAACGCGTCAGCTACATTAATTTACAGAAAGCTCTTGGACTTTCATCACTATTATGATTACAAAGAAGAAGAAGAAGAAAGCAGAGAAACTCAAACTCTTAAGCTCTTTCCACTCGAGAGCGACGATCTTAAAGGTGCTAAGGATACCAAATTACCTATGAGCAAAACCACAAGCACAGACACTACTACTTCAGATTTCATGGCAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

29.52

Weight (kDa)

4.94

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21600 AT1G21600
fragaria_vesca	FvH4_2g27850 FvH4_2g27850 FvH4_2g27850 FvH4_2g27850 FvH4_2g27850
malus_domestica	MD08G1159400.v1.1
prunus_persica	Prupe.1G489500_v2.0.a1 Prupe.1G489500_v2.0.a1 Prupe.1G489500_v2.0.a1
pyrus_communis	pycom348g00030
rosa_chinensis	RchiOBHm_Chr6g0296711
rosa_laevigata	RLG00000011668
rosa_multiflora	Rmu_sc0001741.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171240
rosa_rugosa	Rorug06G0264800
rosa_samantha	Rh6AG376200 Rh6BG384500 Rh6CG389800 Rh6DG377000
rosa_wichuraiana	Rw6G032890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	6, 572
AciI	CCGC	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	2 cut(s)	33, 570
AgsI	TTSAA	4 cut(s)	205, 331, 404, 471
AhlI	ACTAGT	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	518, 547
AluBI	AGCT	6 cut(s)	293, 340, 438, 578, 598, 670
AluI	AGCT	6 cut(s)	293, 340, 438, 578, 598, 670
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	290, 293, 412
AseI	ATTAAT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	8, 179, 252
AsuHPI	GGTGA	3 cut(s)	116, 256, 537
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	179, 252
BbvI	GCAGC	3 cut(s)	280, 302, 424
BccI	CCATC	2 cut(s)	68, 101
BciT130I	CCWGG	2 cut(s)	520, 549
BciVI	GTATCC	1 cut(s)	703
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	665
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	4 cut(s)	7, 291, 294, 413
BlsI	GCNGC	4 cut(s)	8, 292, 295, 414
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	520, 549
Bme18I	GGWCC	2 cut(s)	179, 252
BmeT110I	CYCGRG	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	8, 179, 252
BmrFI	CCNGG	2 cut(s)	520, 549
BmsI	GCATC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	520, 549
BseGI	GGATG	2 cut(s)	60, 492
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	83, 129, 299
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	280, 302, 424
Bsh1236I	CGCG	2 cut(s)	6, 572
BshFI	GGCC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	680
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	680
Bsp143I	GATC	3 cut(s)	256, 454, 691
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	3 cut(s)	82, 130, 298
BspFNI	CGCG	2 cut(s)	6, 572
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	3 cut(s)	256, 454, 691
Bst2UI	CCWGG	2 cut(s)	520, 549
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	2 cut(s)	47, 275
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	4 cut(s)	69, 138, 285, 705
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	60, 492
BstFNI	CGCG	2 cut(s)	6, 572
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	259, 457, 694
BstMBI	GATC	3 cut(s)	256, 454, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 47, 275, 421
BstNI	CCWGG	2 cut(s)	520, 549
BstSCI	CCNGG	2 cut(s)	518, 547
BstUI	CGCG	2 cut(s)	6, 572
BstV1I	GCAGC	3 cut(s)	280, 302, 424
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	60, 492
BtsIMutI	CAGTG	2 cut(s)	127, 352
Cac8I	GCNNGC	1 cut(s)	338
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	8, 179, 252
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	322, 496, 766
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	4 cut(s)	69, 138, 285, 705
DpnI	GATC	3 cut(s)	258, 456, 693
DpnII	GATC	3 cut(s)	256, 454, 691
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	179, 252
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	680
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	518, 547
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	3 cut(s)	325, 499, 769
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	3 cut(s)	321, 495, 765
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	7, 291, 294, 413
FokI	GGATG	2 cut(s)	47, 499
Fsp4HI	GCNGC	4 cut(s)	7, 291, 294, 413
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	4 cut(s)	7, 291, 294, 413
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	1 cut(s)	9
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	325, 499, 769
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	2 cut(s)	281, 542
HphI	GGTGA	3 cut(s)	116, 256, 537
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	4 cut(s)	193, 256, 459, 760
Hpy188III	TCNNGA	2 cut(s)	71, 682
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	21, 198, 243, 373
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	41, 269, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 47, 275, 421
HpyF3I	CTNAG	4 cut(s)	69, 138, 285, 705
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	325, 499, 769
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	256, 454, 691
Lsp1109I	GCAGC	3 cut(s)	280, 302, 424
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	258, 456, 693
MboI	GATC	3 cut(s)	256, 454, 691
MboII	GAAGA	7 cut(s)	226, 437, 459, 644, 647, 650, 653
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	4 cut(s)	45, 511, 585, 716
MluI	ACGCGT	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	9, 74, 133, 477, 526, 568
Mph1103I	ATGCAT	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	169
MseI	TTAA	3 cut(s)	584, 666, 696
MslI	CAYNNNNRTG	2 cut(s)	500, 618
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	520, 549
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	2 cut(s)	520, 549
MvnI	CGCG	2 cut(s)	6, 572
MwoI	GCNNNNNNNGC	4 cut(s)	25, 47, 275, 421
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	256, 454, 691
NlaIII	CATG	3 cut(s)	325, 499, 769
NsiI	ATGCAT	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	281, 542
PkrI	GCNGC	4 cut(s)	8, 292, 295, 414
PshBI	ATTAAT	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	518, 547
PspGI	CCWGG	2 cut(s)	518, 547
PspPI	GGNCC	3 cut(s)	8, 179, 252
PstNI	CAGNNNCTG	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	2 cut(s)	500, 618
SaqAI	TTAA	3 cut(s)	584, 666, 696
SatI	GCNGC	4 cut(s)	7, 291, 294, 413
Sau3AI	GATC	3 cut(s)	256, 454, 691
Sau96I	GGNCC	3 cut(s)	8, 179, 252
ScaI	AGTACT	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	520, 549
SfaNI	GCATC	1 cut(s)	50
Sfr274I	CTCGAG	1 cut(s)	680
SinI	GGWCC	2 cut(s)	179, 252
SlaI	CTCGAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	2 cut(s)	500, 618
SmlI	CTYRAG	2 cut(s)	665, 680
SmoI	CTYRAG	2 cut(s)	665, 680
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	4 cut(s)	45, 511, 585, 716
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	1 cut(s)	779
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	518, 547
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	14, 681
TasI	AATT	4 cut(s)	45, 511, 585, 716
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	281, 542
Tru1I	TTAA	3 cut(s)	584, 666, 696
Tru9I	TTAA	3 cut(s)	584, 666, 696
TscAI	CASTG	2 cut(s)	127, 352
TseI	GCWGC	3 cut(s)	290, 293, 412
TspDTI	ATGAA	6 cut(s)	162, 210, 369, 518, 599, 754
TspRI	CASTG	2 cut(s)	127, 352
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	179, 252
VspI	ATTAAT	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.