Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009190

Physical Location & Seq

Genomic Coordinates Reverse (-)

11544689 .. 11547038

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011668

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGAACCACCGCTCTCTTCCTCTCTCCGCCGCCGCCGCCGCCGCTGCTCTTCACCCACAAACCTCTCTTCACACCCACCACACCTCTCCTCCTGCACTCTTCCCACCCCCTCCCTTTCCTCTCCCTCAAACCCAAACCAAAACCGCCCTCCTACCTCGTCCGCGCCGACGACGGCGACGCCGACGGAGGCGGCCCCGACGACTACGACATGGACGTTGAGGAGCTCGAGGAGGTCGACAACAAGAAGGACTTCGACATCGAGTACGACCCCCTCGCCGGCGCCTCCGCCGCAGTCGACGCCGCCAACGGTGATGTCGACATCGCCATGGTGCCGAGCAAGAGCTTCGTGTTCACGCAGGGCTGGGACTCCGAGATGGTGGTGGATTATCGGATCAACGAGGACGAGTTTCACAAGATTAGTTTGCTGGATTGCGATTTCTTTATACGGAAACCGCCGGATCCCGATAACGACGTCTTCGATTTCAGAGAGATGTATGTTACTCCTCCGGATACAGATGTTTATGCCATTCCTAGGGTTTTAGCTCCAATGCCTGACAAGTACATTCGATGCGCCCAGAGTGAATTTAGCTGCTACAATGTGACGGAACCGCCCATTGATGCTCCTAGAGACCCATTGTACAAGACCGAGAGGGACGTTTTTAAGGTTTATTTGACAAAGCACTACAGGAACCGGCGCTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTATGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGCAAAAGTCCTGGTCAGTGTTCCAGGGGGAAGAACCAGAGATAGAAGACATGATCTGCTTGTAATACGTGACAATGGCAACTCCTTCAGAATAGTTCATGGGAGTGAAAAAGATGATCCCACCACAGTGATAGAGAGGGAAGAGTGGAATAAGACCAGAAAGGACATGGAGAGACATCTTAGCAAGCTACGAGATTTCCCCGTTTCAAATTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

37.9

Weight (kDa)

4.92

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21600 AT1G21600
fragaria_vesca	FvH4_2g27850 FvH4_2g27850 FvH4_2g27850 FvH4_2g27850 FvH4_2g27850
malus_domestica	MD08G1159400.v1.1
prunus_persica	Prupe.1G489500_v2.0.a1 Prupe.1G489500_v2.0.a1 Prupe.1G489500_v2.0.a1
pyrus_communis	pycom348g00030
rosa_chinensis	RchiOBHm_Chr6g0296711
rosa_laevigata	RLG00000011668
rosa_multiflora	Rmu_sc0001741.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171240
rosa_rugosa	Rorug06G0264800
rosa_samantha	Rh6AG376200 Rh6BG384500 Rh6CG389800 Rh6DG377000
rosa_wichuraiana	Rw6G032890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
AccB1I	GGYRCC	2 cut(s)	281, 331
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	3 cut(s)	237, 297, 318
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	508
AclWI	GGATC	4 cut(s)	401, 455, 468, 884
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	844
AcyI	GRCGYC	4 cut(s)	180, 282, 300, 474
AfaI	GTAC	4 cut(s)	266, 563, 641, 720
AfiI	CCNNNNNNNGG	3 cut(s)	278, 534, 700
AgsI	TTSAA	2 cut(s)	731, 981
AjnI	CCWGG	2 cut(s)	783, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	5 cut(s)	226, 345, 545, 591, 961
AluI	AGCT	5 cut(s)	226, 345, 545, 591, 961
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	624, 699, 940
AlwI	GGATC	4 cut(s)	401, 455, 468, 884
Ama87I	CYCGRG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	46, 591
ApoI	RAATTY	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
Asp700I	GAANNNNTTC	1 cut(s)	251
AspA2I	CCTAGG	1 cut(s)	533
AspLEI	GCGC	4 cut(s)	167, 284, 575, 699
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	46, 323
AvaI	CYCGRG	1 cut(s)	227
AvrII	CCTAGG	1 cut(s)	533
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	2 cut(s)	281, 331
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	469, 826
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	33, 578
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	2 cut(s)	785, 798
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	3 cut(s)	624, 699, 940
BfaI	CTAG	3 cut(s)	534, 627, 991
BfmI	CTRYAG	1 cut(s)	685
BfoI	RGCGCY	2 cut(s)	285, 700
BfuI	GTATCC	1 cut(s)	505
BlnI	CCTAGG	1 cut(s)	533
Bme1390I	CCNGG	2 cut(s)	785, 798
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	6 cut(s)	196, 283, 333, 462, 609, 692
BmrFI	CCNGG	2 cut(s)	785, 798
BmsI	GCATC	2 cut(s)	560, 610
BpiI	GAAGAC	2 cut(s)	469, 826
BsaAI	YACGTR	1 cut(s)	842
BsaHI	GRCGYC	4 cut(s)	180, 282, 300, 474
BsaI	GGTCTC	2 cut(s)	624, 699
BsaJI	CCNNGG	3 cut(s)	327, 533, 797
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 534, 700
Bse118I	RCCGGY	2 cut(s)	278, 693
Bse1I	ACTGG	1 cut(s)	726
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	785, 798
BseDI	CCNNGG	3 cut(s)	327, 533, 797
BseLI	CCNNNNNNNGG	3 cut(s)	278, 534, 700
BseNI	ACTGG	1 cut(s)	726
BseRI	GAGGAG	4 cut(s)	80, 236, 245, 495
BseXI	GCAGC	2 cut(s)	33, 578
BseYI	CCCAGC	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	2 cut(s)	281, 331
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	4 cut(s)	279, 458, 509, 694
BslFI	GGGAC	2 cut(s)	380, 668
BslI	CCNNNNNNNGG	3 cut(s)	278, 534, 700
BsmAI	GTCTC	3 cut(s)	624, 699, 940
BsmFI	GGGAC	2 cut(s)	380, 668
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	2 cut(s)	624, 699
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	4 cut(s)	393, 460, 826, 889
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	508
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	6 cut(s)	196, 283, 333, 462, 609, 692
BspPI	GGATC	4 cut(s)	401, 455, 468, 884
BspQI	GCTCTTC	1 cut(s)	56
BspT107I	GGYRCC	2 cut(s)	281, 331
BspTNI	GGTCTC	2 cut(s)	624, 699
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	278, 693
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	726
BssAI	RCCGGY	2 cut(s)	278, 693
BssECI	CCNNGG	3 cut(s)	327, 533, 797
BssMI	GATC	4 cut(s)	393, 460, 826, 889
BssNI	GRCGYC	4 cut(s)	180, 282, 300, 474
BssT1I	CCWWGG	2 cut(s)	327, 533
Bst2UI	CCWGG	2 cut(s)	785, 798
Bst4CI	ACNGT	2 cut(s)	311, 901
Bst6I	CTCTTC	6 cut(s)	23, 56, 74, 106, 726, 909
BstACI	GRCGYC	4 cut(s)	180, 282, 300, 474
BstAUI	TGTACA	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	2 cut(s)	280, 959
BstDEI	CTNAG	1 cut(s)	953
BstDSI	CCRYGG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	2 cut(s)	285, 700
BstHHI	GCGC	4 cut(s)	167, 284, 575, 699
BstKTI	GATC	4 cut(s)	396, 463, 829, 892
BstMAI	GTCTC	3 cut(s)	624, 699, 940
BstMBI	GATC	4 cut(s)	393, 460, 826, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 40, 43, 46, 290, 299
BstNI	CCWGG	2 cut(s)	785, 798
BstSCI	CCNGG	2 cut(s)	783, 796
BstSFI	CTRYAG	1 cut(s)	685
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	33, 578
BstV2I	GAAGAC	2 cut(s)	469, 826
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	796, 906
Cac8I	GCNNGC	2 cut(s)	280, 959
CfoI	GCGC	4 cut(s)	167, 284, 575, 699
Cfr10I	RCCGGY	2 cut(s)	278, 693
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	2 cut(s)	188, 308
Csp6I	GTAC	4 cut(s)	265, 562, 640, 719
CviAII	CATG	5 cut(s)	211, 328, 824, 872, 940
CviJI	RGCY	7 cut(s)	195, 226, 345, 363, 545, 591, 961
CviKI_1	RGCY	7 cut(s)	195, 226, 345, 363, 545, 591, 961
CviQI	GTAC	4 cut(s)	265, 562, 640, 719
DdeI	CTNAG	1 cut(s)	953
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	4 cut(s)	395, 462, 828, 891
DpnII	GATC	4 cut(s)	393, 460, 826, 889
Eam1104I	CTCTTC	6 cut(s)	23, 56, 74, 106, 726, 909
EarI	CTCTTC	6 cut(s)	23, 56, 74, 106, 726, 909
EciI	GGCGGA	2 cut(s)	18, 277
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	327, 533
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	2 cut(s)	624, 699
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	844
Eco88I	CYCGRG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	783, 796
EcoT14I	CCWWGG	2 cut(s)	327, 533
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	327, 533
FaeI	CATG	5 cut(s)	214, 331, 827, 875, 943
FaiI	YATR	9 cut(s)	212, 329, 446, 498, 525, 741, 825, 873, 941
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	380, 668
FatI	CATG	5 cut(s)	210, 327, 823, 871, 939
FblI	GTMKAC	3 cut(s)	237, 297, 318
FriOI	GRGCYC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	534, 627, 991
GlaI	GCGC	4 cut(s)	166, 283, 574, 698
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	2 cut(s)	285, 700
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	4 cut(s)	279, 458, 509, 694
HgaI	GACGC	2 cut(s)	188, 308
HhaI	GCGC	4 cut(s)	167, 284, 575, 699
Hin1I	GRCGYC	4 cut(s)	180, 282, 300, 474
Hin1II	CATG	5 cut(s)	214, 331, 827, 875, 943
Hin6I	GCGC	4 cut(s)	165, 282, 573, 697
HinP1I	GCGC	4 cut(s)	165, 282, 573, 697
HincII	GTYRAC	3 cut(s)	238, 298, 319
HindII	GTYRAC	3 cut(s)	238, 298, 319
HinfI	GANTC	2 cut(s)	368, 749
HpaII	CCGG	4 cut(s)	279, 458, 509, 694
HphI	GGTGA	2 cut(s)	46, 323
Hpy166II	GTNNAC	4 cut(s)	238, 298, 319, 354
Hpy188I	TCNGA	4 cut(s)	373, 393, 488, 863
Hpy188III	TCNNGA	2 cut(s)	464, 509
Hpy8I	GTNNAC	4 cut(s)	238, 298, 319, 354
Hpy99I	CGWCG	7 cut(s)	173, 176, 182, 188, 203, 302, 476
HpyAV	CCTTC	2 cut(s)	241, 868
HpyCH4III	ACNGT	2 cut(s)	311, 901
HpyCH4IV	ACGT	4 cut(s)	216, 474, 657, 841
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 40, 43, 46, 290, 299
HpyF3I	CTNAG	1 cut(s)	953
HpySE526I	ACGT	4 cut(s)	216, 474, 657, 841
Hsp92I	GRCGYC	4 cut(s)	180, 282, 300, 474
Hsp92II	CATG	5 cut(s)	214, 331, 827, 875, 943
HspAI	GCGC	4 cut(s)	165, 282, 573, 697
KasI	GGCGCC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	508
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	393, 460, 826, 889
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	223, 550, 628
Lsp1109I	GCAGC	2 cut(s)	33, 578
LweI	GCATC	2 cut(s)	560, 610
MaeI	CTAG	3 cut(s)	534, 627, 991
MaeII	ACGT	4 cut(s)	216, 474, 657, 841
MaeIII	GTNAC	3 cut(s)	499, 601, 842
MalI	GATC	4 cut(s)	395, 462, 828, 891
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	4 cut(s)	393, 460, 826, 889
MboII	GAAGA	9 cut(s)	10, 43, 61, 93, 469, 743, 816, 831, 926
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	2 cut(s)	584, 982
Mly113I	GGCGCC	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	362
MreI	CGCCGGCG	1 cut(s)	278
MroI	TCCGGA	1 cut(s)	508
MroNI	GCCGGC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	3 cut(s)	326, 876, 899
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	4 cut(s)	279, 458, 509, 694
MspR9I	CCNGG	2 cut(s)	785, 798
MvaI	CCWGG	2 cut(s)	785, 798
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	6 cut(s)	37, 40, 43, 46, 290, 299
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	4 cut(s)	393, 460, 826, 889
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	5 cut(s)	214, 331, 827, 875, 943
NlaIV	GGNNCC	6 cut(s)	196, 283, 333, 462, 609, 692
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	601, 842
OliI	CACNNNNGTG	1 cut(s)	899
PaeR7I	CTCGAG	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	6 cut(s)	165, 180, 213, 234, 315, 477
PdiI	GCCGGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	749
PflFI	GACNNNGTC	1 cut(s)	760
PleI	GAGTC	1 cut(s)	362
PluTI	GGCGCC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	842
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	783, 796
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	2 cut(s)	783, 796
PspN4I	GGNNCC	6 cut(s)	196, 283, 333, 462, 609, 692
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	760
RsaI	GTAC	4 cut(s)	266, 563, 641, 720
RsaNI	GTAC	4 cut(s)	265, 562, 640, 719
RseI	CAYNNNNRTG	3 cut(s)	326, 876, 899
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	3 cut(s)	236, 296, 317
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	663
Sau3AI	GATC	4 cut(s)	393, 460, 826, 889
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	785, 798
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	560, 610
SfcI	CTRYAG	1 cut(s)	685
SfoI	GGCGCC	1 cut(s)	283
Sfr274I	CTCGAG	1 cut(s)	227
SgrAI	CRCCGGYG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	227
SmiMI	CAYNNNNRTG	3 cut(s)	326, 876, 899
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	584, 982
SspDI	GGCGCC	1 cut(s)	281
SspMI	CTAG	3 cut(s)	534, 627, 991
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	783, 796
StyI	CCWWGG	2 cut(s)	327, 533
TaaI	ACNGT	2 cut(s)	311, 901
TaiI	ACGT	4 cut(s)	219, 477, 660, 844
TaqI	TCGA	8 cut(s)	228, 237, 255, 261, 297, 318, 480, 568
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	2 cut(s)	584, 982
TatI	WGTACW	3 cut(s)	561, 639, 718
TauI	GCSGC	8 cut(s)	34, 37, 40, 43, 46, 195, 293, 305
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	2 cut(s)	796, 906
TseFI	GTSAC	2 cut(s)	601, 842
TseI	GCWGC	2 cut(s)	46, 591
Tsp45I	GTSAC	2 cut(s)	601, 842
TspDTI	ATGAA	1 cut(s)	860
TspGWI	ACGGA	3 cut(s)	201, 463, 620
TspRI	CASTG	2 cut(s)	796, 906
Tth111I	GACNNNGTC	1 cut(s)	760
XapI	RAATTY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	227
XmaJI	CCTAGG	1 cut(s)	533
XmiI	GTMKAC	3 cut(s)	237, 297, 318
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	3 cut(s)	534, 627, 991
ZraI	GACGTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.