Rmu_sc0001741.1_g000006

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001741.1
Physical Location & Seq
Reverse (-)
18515 .. 22957
4443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001741.1_g000006.1.cds

Sequence Viewer

Length: 1173 bp
atgagagccaccgctctcttcctccctccgccgccgccgccgccattattcacccacaaacctgtcttcacacccaccacacctctcctcctcctccactcttcccaccccctccctttccgctccctcaaacccaaacccgccctcaaccgcccctccttcctcgtccgcgccgacgacggtgacggcgacggaggcggccccgacgactacgacatggacgttgaggagctggaggaggtcgacaacaagaaggacttcgacatcgagtacgaccccctcgccggcgcctccgccgcagtcgacgccgccaacggtgatgtcgacatcgccatggtgccgagcaagagcttcgtgtttacgcagggctgggactccgagatggtggtggattatcggatcaacgaggacgagtttcacaagattagtttgctcgattgcgatttctttatacggaaaccgccggaccccgataacgacgtcttcgatttcagagagatgtatgttacgcctccggatacagatgtttatgccattcctagggttttagctccaatgcctgacaagtacattcgatgcgcccagagtgaatttagctgctacaatgtgacggaaccgcccattgatgctcctagagacccattgtacaagaccgagagggacgtttttaaggtgtatttgacaaagcactacaggaaccggcgcttgggagaccctgattttgtactggattttgaagagatttatgtgattgattccaagacaaagtctattagcagagcaaaagtcctggtcagtgttccggggggaagaaccagagatagaagacatgatctgcttgtaatacgtgacaatggcaactccttcagaatagttcatgcgagtgaaaaagatgatcccaccacagtgatagagagggaagagtggaataagaccagaaaggacatggagagacatcttagcaagctacgagatttccccgtttcaaattgctgccaaaacatactgatcaagatcaagagggaaggagaggagcgggtctctgggtttgagattcgaatattaaacggatatgttgaagacccgactcgaccctccgaattcgatctagcaattcacgaggtccccgatcttgagatcaatatccgcaatgccaagatcgccgacctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

44.66

Weight (kDa)

4.94

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 287, 337
AccBSI CCGCTC 3 cut(s) 14, 123, 1036
AccI GTMKAC 3 cut(s) 243, 303, 324
AccII CGCG 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 514
AclWI GGATC 2 cut(s) 407, 890
AcsI RAATTY 2 cut(s) 590, 1100
AcuI CTGAAG 1 cut(s) 850
AcyI GRCGYC 3 cut(s) 288, 306, 480
AfaI GTAC 4 cut(s) 272, 569, 647, 726
AfiI CCNNNNNNNGG 3 cut(s) 284, 540, 706
AgsI TTSAA 3 cut(s) 737, 987, 1079
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 5 cut(s) 232, 351, 551, 597, 967
AluI AGCT 5 cut(s) 232, 351, 551, 597, 967
Alw26I GTCTC 4 cut(s) 630, 705, 946, 1045
AlwI GGATC 2 cut(s) 407, 890
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 597, 993
ApoI RAATTY 2 cut(s) 590, 1100
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 257
AspA2I CCTAGG 1 cut(s) 539
AspLEI GCGC 4 cut(s) 173, 290, 581, 705
AspS9I GGNCC 3 cut(s) 200, 466, 1123
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 3 cut(s) 43, 194, 329
AsuII TTCGAA 1 cut(s) 1057
AvaII GGWCC 2 cut(s) 466, 1123
AvrII CCTAGG 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanI GGYRCC 2 cut(s) 287, 337
BauI CACGAG 1 cut(s) 1118
BbsI GAAGAC 4 cut(s) 58, 475, 832, 1086
BbvI GCAGC 2 cut(s) 584, 980
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 791
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 1 cut(s) 1008
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 4 cut(s) 630, 705, 946, 1045
BfaI CTAG 3 cut(s) 540, 633, 1109
BfmI CTRYAG 1 cut(s) 691
BfoI RGCGCY 2 cut(s) 291, 706
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 9 cut(s) 32, 35, 38, 41, 199, 297, 309, 598, 994
BlnI CCTAGG 1 cut(s) 539
BlsI GCNGC 9 cut(s) 33, 36, 39, 42, 200, 298, 310, 599, 995
Bme1390I CCNGG 2 cut(s) 791, 804
Bme18I GGWCC 2 cut(s) 466, 1123
BmgT120I GGNCC 3 cut(s) 200, 466, 1123
BmiI GGNNCC 7 cut(s) 202, 289, 339, 468, 615, 698, 1125
BmrFI CCNGG 2 cut(s) 791, 804
BmsI GCATC 2 cut(s) 566, 616
BpiI GAAGAC 4 cut(s) 58, 475, 832, 1086
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 1057
BpuEI CTTGAG 1 cut(s) 1154
BpuMI CCSGG 1 cut(s) 804
BsaAI YACGTR 1 cut(s) 848
BsaBI GATNNNNATC 2 cut(s) 1013, 1142
BsaHI GRCGYC 3 cut(s) 288, 306, 480
BsaI GGTCTC 3 cut(s) 630, 705, 1045
BsaJI CCNNGG 3 cut(s) 333, 539, 803
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 540, 706
Bse118I RCCGGY 2 cut(s) 284, 699
Bse1I ACTGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 1156
Bse8I GATNNNNATC 2 cut(s) 1013, 1142
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 3 cut(s) 333, 539, 803
BseJI GATNNNNATC 2 cut(s) 1013, 1142
BseLI CCNNNNNNNGG 3 cut(s) 284, 540, 706
BseMI GCAATG 1 cut(s) 1156
BseNI ACTGG 1 cut(s) 732
BseRI GAGGAG 6 cut(s) 77, 80, 83, 242, 251, 1046
BseXI GCAGC 2 cut(s) 584, 980
BseYI CCCAGC 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 2 cut(s) 287, 337
BsiSI CCGG 5 cut(s) 285, 464, 515, 700, 803
BslFI GGGAC 3 cut(s) 386, 674, 1109
BslI CCNNNNNNNGG 3 cut(s) 284, 540, 706
BsmAI GTCTC 4 cut(s) 630, 705, 946, 1045
BsmFI GGGAC 3 cut(s) 386, 674, 1109
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 3 cut(s) 630, 705, 1045
Bsp119I TTCGAA 1 cut(s) 1057
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 7 cut(s) 202, 289, 339, 468, 615, 698, 1125
BspPI GGATC 2 cut(s) 407, 890
BspT104I TTCGAA 1 cut(s) 1057
BspT107I GGYRCC 2 cut(s) 287, 337
BspTNI GGTCTC 3 cut(s) 630, 705, 1045
BsrBI CCGCTC 3 cut(s) 14, 123, 1036
BsrDI GCAATG 1 cut(s) 1156
BsrFI RCCGGY 2 cut(s) 284, 699
BsrGI TGTACA 1 cut(s) 645
BsrI ACTGG 1 cut(s) 732
BssAI RCCGGY 2 cut(s) 284, 699
BssECI CCNNGG 3 cut(s) 333, 539, 803
BssMI GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
BssNI GRCGYC 3 cut(s) 288, 306, 480
BssSI CACGAG 1 cut(s) 1118
BssT1I CCWWGG 2 cut(s) 333, 539
Bst2BI CACGAG 1 cut(s) 1118
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 3 cut(s) 182, 317, 907
Bst6I CTCTTC 4 cut(s) 23, 106, 732, 915
BstACI GRCGYC 3 cut(s) 288, 306, 480
BstAUI TGTACA 1 cut(s) 645
BstBAI YACGTR 1 cut(s) 848
BstBI TTCGAA 1 cut(s) 1057
BstC8I GCNNGC 2 cut(s) 286, 965
BstDEI CTNAG 1 cut(s) 959
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 2 cut(s) 291, 706
BstHHI GCGC 4 cut(s) 173, 290, 581, 705
BstKTI GATC 9 cut(s) 402, 835, 898, 1011, 1017, 1108, 1132, 1140, 1161
BstMAI GTCTC 4 cut(s) 630, 705, 946, 1045
BstMBI GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
BstMWI GCNNNNNNNGC 6 cut(s) 37, 40, 195, 296, 305, 1160
BstNI CCWGG 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 789, 802
BstSFI CTRYAG 1 cut(s) 691
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 584, 980
BstV2I GAAGAC 4 cut(s) 58, 475, 832, 1086
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 802, 912
Cac8I GCNNGC 2 cut(s) 286, 965
CfoI GCGC 4 cut(s) 173, 290, 581, 705
Cfr10I RCCGGY 2 cut(s) 284, 699
Cfr13I GGNCC 3 cut(s) 200, 466, 1123
CseI GACGC 1 cut(s) 314
Csp6I GTAC 4 cut(s) 271, 568, 646, 725
CviAII CATG 5 cut(s) 217, 334, 830, 878, 946
CviJI RGCY 8 cut(s) 8, 201, 232, 351, 369, 551, 597, 967
CviKI_1 RGCY 8 cut(s) 8, 201, 232, 351, 369, 551, 597, 967
CviQI GTAC 4 cut(s) 271, 568, 646, 725
DdeI CTNAG 1 cut(s) 959
DinI GGCGCC 1 cut(s) 289
DpnI GATC 9 cut(s) 401, 834, 897, 1010, 1016, 1107, 1131, 1139, 1160
DpnII GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
Eam1104I CTCTTC 4 cut(s) 23, 106, 732, 915
EarI CTCTTC 4 cut(s) 23, 106, 732, 915
EciI GGCGGA 2 cut(s) 18, 283
Eco130I CCWWGG 2 cut(s) 333, 539
Eco31I GGTCTC 3 cut(s) 630, 705, 1045
Eco47I GGWCC 2 cut(s) 466, 1123
Eco57I CTGAAG 1 cut(s) 850
EcoO109I RGGNCCY 1 cut(s) 1123
EcoRI GAATTC 1 cut(s) 1100
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 2 cut(s) 333, 539
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 333, 539
FaeI CATG 5 cut(s) 220, 337, 833, 881, 949
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 3 cut(s) 386, 674, 1109
FatI CATG 5 cut(s) 216, 333, 829, 877, 945
FauI CCCGC 2 cut(s) 148, 1029
FbaI TGATCA 1 cut(s) 1008
FblI GTMKAC 3 cut(s) 243, 303, 324
Fnu4HI GCNGC 9 cut(s) 32, 35, 38, 41, 199, 297, 309, 598, 994
Fsp4HI GCNGC 9 cut(s) 32, 35, 38, 41, 199, 297, 309, 598, 994
FspBI CTAG 3 cut(s) 540, 633, 1109
GlaI GCGC 4 cut(s) 172, 289, 580, 704
GluI GCNGC 9 cut(s) 32, 35, 38, 41, 199, 297, 309, 598, 994
GsaI CCCAGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 2 cut(s) 291, 706
HaeIII GGCC 1 cut(s) 201
HapII CCGG 5 cut(s) 285, 464, 515, 700, 803
HgaI GACGC 1 cut(s) 314
HhaI GCGC 4 cut(s) 173, 290, 581, 705
Hin1I GRCGYC 3 cut(s) 288, 306, 480
Hin1II CATG 5 cut(s) 220, 337, 833, 881, 949
Hin6I GCGC 4 cut(s) 171, 288, 579, 703
HinP1I GCGC 4 cut(s) 171, 288, 579, 703
HincII GTYRAC 3 cut(s) 244, 304, 325
HindII GTYRAC 3 cut(s) 244, 304, 325
HinfI GANTC 4 cut(s) 374, 755, 1054, 1087
HpaII CCGG 5 cut(s) 285, 464, 515, 700, 803
HphI GGTGA 3 cut(s) 43, 194, 329
Hpy166II GTNNAC 4 cut(s) 244, 304, 325, 360
Hpy188I TCNGA 5 cut(s) 379, 399, 494, 869, 1099
Hpy188III TCNNGA 5 cut(s) 515, 1012, 1018, 1118, 1133
Hpy8I GTNNAC 4 cut(s) 244, 304, 325, 360
Hpy99I CGWCG 6 cut(s) 179, 182, 194, 209, 308, 482
HpyAV CCTTC 4 cut(s) 169, 247, 874, 1019
HpyCH4III ACNGT 3 cut(s) 182, 317, 907
HpyCH4IV ACGT 4 cut(s) 222, 480, 663, 847
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 40, 195, 296, 305, 1160
HpyF3I CTNAG 1 cut(s) 959
HpySE526I ACGT 4 cut(s) 222, 480, 663, 847
Hsp92I GRCGYC 3 cut(s) 288, 306, 480
Hsp92II CATG 5 cut(s) 220, 337, 833, 881, 949
HspAI GCGC 4 cut(s) 171, 288, 579, 703
KasI GGCGCC 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 1008
Kzo9I GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
LmnI GCTCC 5 cut(s) 128, 229, 556, 634, 1033
Lsp1109I GCAGC 2 cut(s) 584, 980
LweI GCATC 2 cut(s) 566, 616
MaeI CTAG 3 cut(s) 540, 633, 1109
MaeII ACGT 4 cut(s) 222, 480, 663, 847
MaeIII GTNAC 4 cut(s) 182, 505, 607, 848
MalI GATC 9 cut(s) 401, 834, 897, 1010, 1016, 1107, 1131, 1139, 1160
MbiI CCGCTC 3 cut(s) 14, 123, 1036
MboI GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
MboII GAAGA 9 cut(s) 10, 58, 93, 475, 749, 822, 837, 932, 1091
MluCI AATT 4 cut(s) 590, 988, 1100, 1113
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 2 cut(s) 368, 1081
MreI CGCCGGCG 1 cut(s) 284
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 669, 1064
MslI CAYNNNNRTG 3 cut(s) 332, 882, 905
MspI CCGG 5 cut(s) 285, 464, 515, 700, 803
MspR9I CCNGG 2 cut(s) 791, 804
MvaI CCWGG 1 cut(s) 791
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 6 cut(s) 37, 40, 195, 296, 305, 1160
NaeI GCCGGC 1 cut(s) 286
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 333
NdeII GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 5 cut(s) 220, 337, 833, 881, 949
NlaIV GGNNCC 7 cut(s) 202, 289, 339, 468, 615, 698, 1125
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 3 cut(s) 182, 607, 848
NspV TTCGAA 1 cut(s) 1057
OliI CACNNNNGTG 1 cut(s) 905
PcsI WCGNNNNNNNCGW 6 cut(s) 171, 186, 219, 321, 483, 1125
PdiI GCCGGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 755, 1054
PflFI GACNNNGTC 1 cut(s) 766
PkrI GCNGC 9 cut(s) 33, 36, 39, 42, 200, 298, 310, 599, 995
PleI GAGTC 2 cut(s) 368, 1081
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 2 cut(s) 368, 1081
Ppu21I YACGTR 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 1123
Psp5II RGGWCCY 1 cut(s) 1123
Psp6I CCWGG 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 7 cut(s) 202, 289, 339, 468, 615, 698, 1125
PspPI GGNCC 3 cut(s) 200, 466, 1123
PspPPI RGGWCCY 1 cut(s) 1123
PsyI GACNNNGTC 1 cut(s) 766
RsaI GTAC 4 cut(s) 272, 569, 647, 726
RsaNI GTAC 4 cut(s) 271, 568, 646, 725
RseI CAYNNNNRTG 3 cut(s) 332, 882, 905
SalI GTCGAC 3 cut(s) 242, 302, 323
SaqAI TTAA 2 cut(s) 669, 1064
SatI GCNGC 9 cut(s) 32, 35, 38, 41, 199, 297, 309, 598, 994
Sau3AI GATC 9 cut(s) 399, 832, 895, 1008, 1014, 1105, 1129, 1137, 1158
Sau96I GGNCC 3 cut(s) 200, 466, 1123
SchI GAGTC 2 cut(s) 368, 1081
ScrFI CCNGG 2 cut(s) 791, 804
SfaNI GCATC 2 cut(s) 566, 616
SfcI CTRYAG 1 cut(s) 691
SfoI GGCGCC 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 1057
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 2 cut(s) 466, 1123
SmiMI CAYNNNNRTG 3 cut(s) 332, 882, 905
SmlI CTYRAG 1 cut(s) 1133
SmoI CTYRAG 1 cut(s) 1133
Sse9I AATT 4 cut(s) 590, 988, 1100, 1113
SspDI GGCGCC 1 cut(s) 287
SspI AATATT 1 cut(s) 1062
SspMI CTAG 3 cut(s) 540, 633, 1109
StyD4I CCNGG 2 cut(s) 789, 802
StyI CCWWGG 2 cut(s) 333, 539
TaaI ACNGT 3 cut(s) 182, 317, 907
TaiI ACGT 4 cut(s) 225, 483, 666, 850
TaqII GACCGA 1 cut(s) 668
TasI AATT 4 cut(s) 590, 988, 1100, 1113
TatI WGTACW 3 cut(s) 567, 645, 724
TauI GCSGC 7 cut(s) 34, 37, 40, 43, 201, 299, 311
TfiI GAWTC 2 cut(s) 755, 1054
Tru1I TTAA 2 cut(s) 669, 1064
Tru9I TTAA 2 cut(s) 669, 1064
TscAI CASTG 2 cut(s) 802, 912
TseFI GTSAC 3 cut(s) 182, 607, 848
TseI GCWGC 2 cut(s) 597, 993
Tsp45I GTSAC 3 cut(s) 182, 607, 848
TspDTI ATGAA 1 cut(s) 866
TspGWI ACGGA 4 cut(s) 207, 469, 626, 1083
TspRI CASTG 2 cut(s) 802, 912
Tth111I GACNNNGTC 1 cut(s) 766
VpaK11BI GGWCC 2 cut(s) 466, 1123
XapI RAATTY 2 cut(s) 590, 1100
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XmaJI CCTAGG 1 cut(s) 539
XmiI GTMKAC 3 cut(s) 243, 303, 324
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 3 cut(s) 540, 633, 1109
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.