RchiOBHm_Chr6g0296711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009190
Physical Location & Seq
Forward (+)
58451436 .. 58454095
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26633

Sequence Viewer

Length: 1005 bp
ATGAGAGCCACCGCTTTCTTCCTCTCTCCGCCGCCGCCGCCGCCGCCGCCGCCATTCTTCACCCACAAACCTCTCTTCACACCCACCACACCTCTCCTCCTCCACTCTTCCCACCCCCTCCCTTTCCGCTCCCTCAAACCCAAACCCGCCCTCAACCGCCCCTCCTTCCTCGTCCGCGCCGACGACGGCGACGCCGACGGAGGCGGCCCCGACGACTACGACATGGACGTTGAGGAGCTGGAGGAGGTCGACAACAAGAAGGACTTCGACATCGAGTACGACCCCCTCGCCGGCGCCTCCGCCGCAGTCGACGCCGCCAACGGTGATGTCGACATCGCCATGGTGCCGAGCAAGAGCTTCGTGTTCACGCAGGGCTGGGACTCCGAGATGGTGGTGGATTATCGGATCAACGAGGACGAGTTTCACAAGATTAGTTTGCTCGATTGCGATTTCTTTATACGGAAACCGCCGGGCCCCGATAACGACGTCTTCGATTTCAGAGAGATGTATGTTACTCCTCCGGATACAGATGTTTATGCCATTCCTAGGGTTTTAGCTCCAATGCCTGACAAGTACATTCGATGCGCCCAGAGTGAATTTAGCTGCTACAATGTGACGGAACCGCCCATTGATGCTCCTAGAGACCCATTGTACAAGACCGAGAGGGACGTTTTTAAGGTTTATTTGACAAAGCACTACAGGAACCGGCGCTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTACGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGTAAAAGTCCTGGTCAGTGTTCCGGGGGGAAGAACCAGAGATAGAAGACATGATCTGCTTGTAATACGTGACAATGGCAACTCCTTCAGAATAGTTCATGCGAGTGAAAAAGATGATCCCACCACAGTGATAGAGAGGGAAGAGTGGAATAAGACCAGAAAGGACATGGAGAGACATCTTAGCAAGCTACGAGATTTCCCCGTTTCAAATTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

38.35

Weight (kDa)

5.03

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 489
AccB1I GGYRCC 2 cut(s) 293, 343
AccBSI CCGCTC 1 cut(s) 129
AccI GTMKAC 3 cut(s) 249, 309, 330
AccII CGCG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 520
AclWI GGATC 2 cut(s) 413, 896
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 856
AcyI GRCGYC 4 cut(s) 192, 294, 312, 486
AfaI GTAC 4 cut(s) 278, 575, 653, 732
AfiI CCNNNNNNNGG 3 cut(s) 290, 546, 712
AgsI TTSAA 2 cut(s) 743, 993
AjnI CCWGG 1 cut(s) 795
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AleI CACNNNNGTG 1 cut(s) 911
AluBI AGCT 5 cut(s) 238, 357, 557, 603, 973
AluI AGCT 5 cut(s) 238, 357, 557, 603, 973
Alw26I GTCTC 3 cut(s) 636, 711, 952
AlwI GGATC 2 cut(s) 413, 896
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 2 cut(s) 205, 472
ApaI GGGCCC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 603
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
Asp700I GAANNNNTTC 1 cut(s) 263
AspA2I CCTAGG 1 cut(s) 545
AspLEI GCGC 4 cut(s) 179, 296, 587, 711
AspS9I GGNCC 3 cut(s) 206, 472, 473
AsuC2I CCSGG 2 cut(s) 471, 810
AsuHPI GGTGA 2 cut(s) 52, 335
AvrII CCTAGG 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 476
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanI GGYRCC 2 cut(s) 293, 343
BanII GRGCYC 1 cut(s) 476
BbsI GAAGAC 2 cut(s) 481, 838
BbvI GCAGC 1 cut(s) 590
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 1 cut(s) 797
BciVI GTATCC 1 cut(s) 517
BcnI CCSGG 2 cut(s) 471, 810
BcoDI GTCTC 3 cut(s) 636, 711, 952
BfaI CTAG 3 cut(s) 546, 639, 1003
BfmI CTRYAG 1 cut(s) 697
BfoI RGCGCY 2 cut(s) 297, 712
BfuI GTATCC 1 cut(s) 517
BlnI CCTAGG 1 cut(s) 545
Bme1390I CCNGG 3 cut(s) 471, 797, 810
BmgT120I GGNCC 3 cut(s) 206, 472, 473
BmiI GGNNCC 7 cut(s) 208, 295, 345, 474, 475, 621, 704
BmrFI CCNGG 3 cut(s) 471, 797, 810
BmsI GCATC 2 cut(s) 572, 622
BpiI GAAGAC 2 cut(s) 481, 838
BpmI CTGGAG 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 471, 810
BsaAI YACGTR 2 cut(s) 754, 854
BsaHI GRCGYC 4 cut(s) 192, 294, 312, 486
BsaI GGTCTC 2 cut(s) 636, 711
BsaJI CCNNGG 3 cut(s) 339, 545, 809
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 146, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 546, 712
Bse118I RCCGGY 2 cut(s) 290, 705
Bse1I ACTGG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 3 cut(s) 339, 545, 809
BseLI CCNNNNNNNGG 3 cut(s) 290, 546, 712
BseNI ACTGG 1 cut(s) 738
BseRI GAGGAG 5 cut(s) 86, 89, 248, 257, 507
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 590
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 207, 474
BshNI GGYRCC 2 cut(s) 293, 343
BsiSI CCGG 5 cut(s) 291, 470, 521, 706, 809
BslFI GGGAC 2 cut(s) 392, 680
BslI CCNNNNNNNGG 3 cut(s) 290, 546, 712
BsmAI GTCTC 3 cut(s) 636, 711, 952
BsmFI GGGAC 2 cut(s) 392, 680
BsnI GGCC 2 cut(s) 207, 474
Bso31I GGTCTC 2 cut(s) 636, 711
Bsp120I GGGCCC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 476
Bsp13I TCCGGA 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 3 cut(s) 405, 838, 901
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 2 cut(s) 207, 474
BspEI TCCGGA 1 cut(s) 520
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 7 cut(s) 208, 295, 345, 474, 475, 621, 704
BspPI GGATC 2 cut(s) 413, 896
BspT107I GGYRCC 2 cut(s) 293, 343
BspTNI GGTCTC 2 cut(s) 636, 711
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 2 cut(s) 290, 705
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 738
BssAI RCCGGY 2 cut(s) 290, 705
BssECI CCNNGG 3 cut(s) 339, 545, 809
BssMI GATC 3 cut(s) 405, 838, 901
BssNI GRCGYC 4 cut(s) 192, 294, 312, 486
BssT1I CCWWGG 2 cut(s) 339, 545
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 2 cut(s) 323, 913
Bst6I CTCTTC 4 cut(s) 80, 112, 738, 921
BstACI GRCGYC 4 cut(s) 192, 294, 312, 486
BstAUI TGTACA 1 cut(s) 651
BstBAI YACGTR 2 cut(s) 754, 854
BstC8I GCNNGC 2 cut(s) 292, 971
BstDEI CTNAG 1 cut(s) 965
BstDSI CCRYGG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 297, 712
BstHHI GCGC 4 cut(s) 179, 296, 587, 711
BstKTI GATC 3 cut(s) 408, 841, 904
BstMAI GTCTC 3 cut(s) 636, 711, 952
BstMBI GATC 3 cut(s) 405, 838, 901
BstMWI GCNNNNNNNGC 7 cut(s) 37, 40, 43, 46, 49, 302, 311
BstNI CCWGG 1 cut(s) 797
BstSCI CCNGG 3 cut(s) 469, 795, 808
BstSFI CTRYAG 1 cut(s) 697
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 590
BstV2I GAAGAC 2 cut(s) 481, 838
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 207, 474
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 808, 918
Cac8I GCNNGC 2 cut(s) 292, 971
CfoI GCGC 4 cut(s) 179, 296, 587, 711
Cfr10I RCCGGY 2 cut(s) 290, 705
Cfr13I GGNCC 3 cut(s) 206, 472, 473
CseI GACGC 2 cut(s) 200, 320
Csp6I GTAC 4 cut(s) 277, 574, 652, 731
CviAII CATG 5 cut(s) 223, 340, 836, 884, 952
CviJI RGCY 9 cut(s) 8, 207, 238, 357, 375, 474, 557, 603, 973
CviKI_1 RGCY 9 cut(s) 8, 207, 238, 357, 375, 474, 557, 603, 973
CviQI GTAC 4 cut(s) 277, 574, 652, 731
DdeI CTNAG 1 cut(s) 965
DinI GGCGCC 1 cut(s) 295
DpnI GATC 3 cut(s) 407, 840, 903
DpnII GATC 3 cut(s) 405, 838, 901
Eam1104I CTCTTC 4 cut(s) 80, 112, 738, 921
EarI CTCTTC 4 cut(s) 80, 112, 738, 921
EciI GGCGGA 2 cut(s) 18, 289
Eco130I CCWWGG 2 cut(s) 339, 545
Eco24I GRGCYC 1 cut(s) 476
Eco31I GGTCTC 2 cut(s) 636, 711
Eco57I CTGAAG 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 339, 545
EcoT38I GRGCYC 1 cut(s) 476
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 339, 545
FaeI CATG 5 cut(s) 226, 343, 839, 887, 955
FaiI YATR 8 cut(s) 224, 341, 458, 510, 537, 837, 885, 953
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 2 cut(s) 392, 680
FatI CATG 5 cut(s) 222, 339, 835, 883, 951
FauI CCCGC 1 cut(s) 154
FblI GTMKAC 3 cut(s) 249, 309, 330
FriOI GRGCYC 1 cut(s) 476
FspBI CTAG 3 cut(s) 546, 639, 1003
GlaI GCGC 4 cut(s) 178, 295, 586, 710
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 2 cut(s) 297, 712
HaeIII GGCC 2 cut(s) 207, 474
HapII CCGG 5 cut(s) 291, 470, 521, 706, 809
HgaI GACGC 2 cut(s) 200, 320
HhaI GCGC 4 cut(s) 179, 296, 587, 711
Hin1I GRCGYC 4 cut(s) 192, 294, 312, 486
Hin1II CATG 5 cut(s) 226, 343, 839, 887, 955
Hin6I GCGC 4 cut(s) 177, 294, 585, 709
HinP1I GCGC 4 cut(s) 177, 294, 585, 709
HincII GTYRAC 3 cut(s) 250, 310, 331
HindII GTYRAC 3 cut(s) 250, 310, 331
HinfI GANTC 2 cut(s) 380, 761
HpaII CCGG 5 cut(s) 291, 470, 521, 706, 809
HphI GGTGA 2 cut(s) 52, 335
Hpy166II GTNNAC 4 cut(s) 250, 310, 331, 366
Hpy188I TCNGA 4 cut(s) 385, 405, 500, 875
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 4 cut(s) 250, 310, 331, 366
Hpy99I CGWCG 7 cut(s) 185, 188, 194, 200, 215, 314, 488
HpyAV CCTTC 3 cut(s) 175, 253, 880
HpyCH4III ACNGT 2 cut(s) 323, 913
HpyCH4IV ACGT 5 cut(s) 228, 486, 669, 753, 853
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 40, 43, 46, 49, 302, 311
HpyF3I CTNAG 1 cut(s) 965
HpySE526I ACGT 5 cut(s) 228, 486, 669, 753, 853
Hsp92I GRCGYC 4 cut(s) 192, 294, 312, 486
Hsp92II CATG 5 cut(s) 226, 343, 839, 887, 955
HspAI GCGC 4 cut(s) 177, 294, 585, 709
KasI GGCGCC 1 cut(s) 293
Kpn2I TCCGGA 1 cut(s) 520
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 405, 838, 901
LmnI GCTCC 4 cut(s) 134, 235, 562, 640
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 2 cut(s) 572, 622
MaeI CTAG 3 cut(s) 546, 639, 1003
MaeII ACGT 5 cut(s) 228, 486, 669, 753, 853
MaeIII GTNAC 3 cut(s) 511, 613, 854
MalI GATC 3 cut(s) 407, 840, 903
MbiI CCGCTC 1 cut(s) 129
MboI GATC 3 cut(s) 405, 838, 901
MboII GAAGA 9 cut(s) 10, 49, 67, 99, 481, 755, 828, 843, 938
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 2 cut(s) 596, 994
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 1 cut(s) 374
MreI CGCCGGCG 1 cut(s) 290
MroI TCCGGA 1 cut(s) 520
MroNI GCCGGC 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 3 cut(s) 338, 888, 911
MspI CCGG 5 cut(s) 291, 470, 521, 706, 809
MspR9I CCNGG 3 cut(s) 471, 797, 810
MvaI CCWGG 1 cut(s) 797
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 7 cut(s) 37, 40, 43, 46, 49, 302, 311
NaeI GCCGGC 1 cut(s) 292
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 2 cut(s) 471, 810
NcoI CCATGG 1 cut(s) 339
NdeII GATC 3 cut(s) 405, 838, 901
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 5 cut(s) 226, 343, 839, 887, 955
NlaIV GGNNCC 7 cut(s) 208, 295, 345, 474, 475, 621, 704
NmeAIII GCCGAG 1 cut(s) 372
NmuCI GTSAC 2 cut(s) 613, 854
OliI CACNNNNGTG 1 cut(s) 911
PcsI WCGNNNNNNNCGW 5 cut(s) 177, 192, 225, 327, 489
PdiI GCCGGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 761
PflFI GACNNNGTC 1 cut(s) 772
PleI GAGTC 1 cut(s) 374
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 2 cut(s) 754, 854
Psp6I CCWGG 1 cut(s) 795
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 1 cut(s) 795
PspN4I GGNNCC 7 cut(s) 208, 295, 345, 474, 475, 621, 704
PspOMI GGGCCC 1 cut(s) 472
PspPI GGNCC 3 cut(s) 206, 472, 473
PsyI GACNNNGTC 1 cut(s) 772
RsaI GTAC 4 cut(s) 278, 575, 653, 732
RsaNI GTAC 4 cut(s) 277, 574, 652, 731
RseI CAYNNNNRTG 3 cut(s) 338, 888, 911
SalI GTCGAC 3 cut(s) 248, 308, 329
SaqAI TTAA 1 cut(s) 675
Sau3AI GATC 3 cut(s) 405, 838, 901
Sau96I GGNCC 3 cut(s) 206, 472, 473
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 471, 797, 810
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 2 cut(s) 572, 622
SfcI CTRYAG 1 cut(s) 697
SfoI GGCGCC 1 cut(s) 295
SgrAI CRCCGGYG 1 cut(s) 290
SmiMI CAYNNNNRTG 3 cut(s) 338, 888, 911
Sse9I AATT 2 cut(s) 596, 994
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 3 cut(s) 546, 639, 1003
StyD4I CCNGG 3 cut(s) 469, 795, 808
StyI CCWWGG 2 cut(s) 339, 545
TaaI ACNGT 2 cut(s) 323, 913
TaiI ACGT 5 cut(s) 231, 489, 672, 756, 856
TaqI TCGA 8 cut(s) 249, 267, 273, 309, 330, 441, 492, 580
TaqII GACCGA 1 cut(s) 674
TasI AATT 2 cut(s) 596, 994
TatI WGTACW 3 cut(s) 573, 651, 730
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 2 cut(s) 808, 918
TseFI GTSAC 2 cut(s) 613, 854
TseI GCWGC 1 cut(s) 603
Tsp45I GTSAC 2 cut(s) 613, 854
TspDTI ATGAA 1 cut(s) 872
TspGWI ACGGA 3 cut(s) 213, 475, 632
TspRI CASTG 2 cut(s) 808, 918
Tth111I GACNNNGTC 1 cut(s) 772
XapI RAATTY 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XmaJI CCTAGG 1 cut(s) 545
XmiI GTMKAC 3 cut(s) 249, 309, 330
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 3 cut(s) 546, 639, 1003
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.