AT1G21840

Urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006172
Physical Location & Seq
Forward (+)
7666414 .. 7667794
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21840.1

Sequence Viewer

Length: 723 bp
ATGGAAGAAGACGAAAGACGCGACATTGTTATGTCAAGAGCTTCTTCTTGTATGCAGTGGAGTCAGTGGCAATTACTTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGTTTGGTCTCGAAGCAGCTATTCAGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCACATCATTCATGTGTTGGATAACACAGCTAGCTTATTGCTTCCTTTTGTCTACTCTGCTCTCAAATCTCCTGATATAGAGACATGGCATAAACTTGATGGAATACTTAACGCTACTTTAACTAACCAAGTTTCTTCAAAGGCGTCAATGTCACAAGGATCAGCTTTGTTTCGTATAGCTGCTTCGGTTTTTACTGAGGTACCAAATCTTAAGATGATTCGTGATGCTTCTTTGGGGTCAAAAAATGTATGTTTCCACCATGCACCGATATTCGGGCTTGTATGTGGTTTACTCGGCATGGATTCCGAGACTTCTCAGAGAGCGTATCTGTTTGTAACGCTCAGAGATGTTCTTTCTGCTGCAACGAGATTGAACATAGTTGGACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCCATTGTTACTGAAACCGTTTTAGAGAAGTGGATGAATCGTGAAGCTGGTGAAGCATGTCAGACTTCTCCTTTGCTGGATGTTGTGCAAGGTTGTCACGGTTACTTGTTTTCTAGACTGTTTTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

240

Amino Acids

26.4

Weight (kDa)

5.72

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 50 - 197 1.7e-24 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 21
AclWI GGATC 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 2 cut(s) 98, 446
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 84, 312, 547
AluBI AGCT 7 cut(s) 41, 131, 203, 207, 338, 353, 638
AluI AGCT 7 cut(s) 41, 131, 203, 207, 338, 353, 638
Alw26I GTCTC 4 cut(s) 125, 159, 248, 476
AlwI GGATC 1 cut(s) 340
ApeKI GCWGC 4 cut(s) 128, 353, 533, 580
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
Asp718I GGTACC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 2 cut(s) 586, 653
AsuNHI GCTAGC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 557
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BanI GGYRCC 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 140, 340, 520, 592
BccI CCATC 2 cut(s) 266, 556
BcoDI GTCTC 4 cut(s) 125, 159, 248, 476
BfaI CTAG 2 cut(s) 204, 705
BfrI CTTAAG 1 cut(s) 383
BisI GCNGC 4 cut(s) 129, 354, 534, 581
BlsI GCNGC 4 cut(s) 130, 355, 535, 582
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 3 cut(s) 388, 567, 592
BmtI GCTAGC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 446
Bse3DI GCAATG 1 cut(s) 588
BseGI GGATG 2 cut(s) 630, 676
BseLI CCNNNNNNNGG 2 cut(s) 98, 446
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 3 cut(s) 360, 503, 529
BseXI GCAGC 4 cut(s) 140, 340, 520, 592
Bsh1236I CGCG 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 98, 446
BsmAI GTCTC 4 cut(s) 125, 159, 248, 476
BsmBI CGTCTC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 332
BspCNI CTCAG 3 cut(s) 361, 502, 528
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 588
BssMI GATC 1 cut(s) 332
BssNI GRCGYC 1 cut(s) 317
Bst4CI ACNGT 3 cut(s) 610, 692, 711
BstACI GRCGYC 1 cut(s) 317
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 369, 489, 515
BstF5I GGATG 2 cut(s) 630, 676
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 4 cut(s) 125, 159, 248, 476
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 651
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 4 cut(s) 140, 340, 520, 592
BstV2I GAAGAC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 569
BtsCI GGATG 2 cut(s) 630, 676
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 71
Cac8I GCNNGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 557
CseI GACGC 2 cut(s) 27, 306
Csp6I GTAC 1 cut(s) 374
CviAII CATG 5 cut(s) 185, 258, 434, 472, 648
CviJI RGCY 8 cut(s) 41, 131, 203, 207, 338, 353, 451, 638
CviKI_1 RGCY 8 cut(s) 41, 131, 203, 207, 338, 353, 451, 638
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 3 cut(s) 369, 489, 515
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 5 cut(s) 188, 261, 437, 475, 651
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FatI CATG 5 cut(s) 184, 257, 433, 471, 647
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 129, 354, 534, 581
FokI GGATG 2 cut(s) 637, 683
Fsp4HI GCNGC 4 cut(s) 129, 354, 534, 581
FspBI CTAG 2 cut(s) 204, 705
GluI GCNGC 4 cut(s) 129, 354, 534, 581
HgaI GACGC 2 cut(s) 27, 306
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 5 cut(s) 188, 261, 437, 475, 651
HinfI GANTC 6 cut(s) 61, 80, 139, 391, 476, 628
HphI GGTGA 2 cut(s) 586, 653
Hpy166II GTNNAC 2 cut(s) 226, 464
Hpy188I TCNGA 5 cut(s) 138, 481, 492, 518, 654
Hpy188III TCNNGA 8 cut(s) 36, 122, 158, 245, 395, 632, 705, 720
Hpy8I GTNNAC 2 cut(s) 226, 464
HpyCH4III ACNGT 3 cut(s) 610, 692, 711
HpyCH4V TGCA 5 cut(s) 55, 437, 536, 580, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 3 cut(s) 369, 489, 515
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 5 cut(s) 188, 261, 437, 475, 651
KpnI GGTACC 1 cut(s) 377
Kzo9I GATC 1 cut(s) 332
LpnPI CCDG 5 cut(s) 81, 171, 258, 624, 653
Lsp1109I GCAGC 4 cut(s) 140, 340, 520, 592
LweI GCATC 3 cut(s) 388, 567, 592
MaeI CTAG 2 cut(s) 204, 705
MaeIII GTNAC 5 cut(s) 324, 508, 598, 686, 692
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MboII GAAGA 5 cut(s) 17, 20, 36, 173, 300
MluCI AATT 2 cut(s) 71, 84
MlyI GAGTC 2 cut(s) 70, 133
MmeI TCCRAC 2 cut(s) 171, 535
MnlI CCTC 2 cut(s) 92, 364
MseI TTAA 3 cut(s) 282, 293, 384
MslI CAYNNNNRTG 2 cut(s) 29, 185
MspCI CTTAAG 1 cut(s) 383
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 1 cut(s) 332
NheI GCTAGC 1 cut(s) 203
NlaIII CATG 5 cut(s) 188, 261, 437, 475, 651
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 324, 686
NspI RCATGY 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 4 cut(s) 80, 391, 476, 628
PkrI GCNGC 4 cut(s) 130, 355, 535, 582
PleI GAGTC 2 cut(s) 69, 133
PpsI GAGTC 2 cut(s) 69, 133
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 557
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 2 cut(s) 29, 185
SaqAI TTAA 3 cut(s) 282, 293, 384
SatI GCNGC 4 cut(s) 129, 354, 534, 581
Sau3AI GATC 1 cut(s) 332
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 2 cut(s) 70, 133
SetI ASST 9 cut(s) 43, 133, 205, 209, 340, 355, 375, 640, 685
SfaNI GCATC 3 cut(s) 388, 567, 592
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 2 cut(s) 29, 185
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 71, 84
SspMI CTAG 2 cut(s) 204, 705
TaaI ACNGT 3 cut(s) 610, 692, 711
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 574
TasI AATT 2 cut(s) 71, 84
TfiI GAWTC 4 cut(s) 80, 391, 476, 628
Tru1I TTAA 3 cut(s) 282, 293, 384
Tru9I TTAA 3 cut(s) 282, 293, 384
TscAI CASTG 2 cut(s) 62, 71
TseFI GTSAC 2 cut(s) 324, 686
TseI GCWGC 4 cut(s) 128, 353, 533, 580
Tsp45I GTSAC 2 cut(s) 324, 686
TspDTI ATGAA 2 cut(s) 173, 641
TspRI CASTG 2 cut(s) 62, 71
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 704
XceI RCATGY 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 204, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.