Rh1BG033200

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006172
Physical Location & Seq
Forward (+)
4560535 .. 4561149
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG033200.1

Sequence Viewer

Length: 615 bp
ATGGATATAAACAAAGAAACCAAGGAGCATGCTTCGTCAGACTCCCTTTTACAATGGGGACAATGGCAACTGCTTGATTCTATCCTCCCAACCGGTGGTTTTGCTCATTCCCTTGGTCTTGAGGCTGCAAGCCAAGCTCGGATGGTCTCGGTTCCTGAAGATCTCCAAACTTTTGTAATTCATCTGTTAGAGAATACTGCAAGCTTACTGCTTCCTTTTGTGTATTCTACAACAATATCACCTGATTTGGAGACCTTGCAGAAACACGACAAGATGTTGGACGCAATGCTAACTAATGAAGTGGGTAGAAAGGCATCAATTGCACAAGGGTCTGCACTCATGAGAGTGACTGCAGCAGTGTATTCAGAAATACCGTCTCTTAAATCTGTGAGGGAAACTGCTGTAAGTAATGGAGTTGTTTCTATTCACCATGCTCCTATATTTGGGTTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAGAGACGTTATTTCTGCAGCAACAAGGCCGAATTTGGTCGGACCCCTTGGTGCGGCTGTTCTGCAACATCATATTGCTCCTATATCTCCAAAGCTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

204

Amino Acids

22.05

Weight (kDa)

6.03

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 51 - 196 5.5e-22 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AciI CCGC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 3 cut(s) 95, 443, 565
AgeI ACCGGT 1 cut(s) 92
AluBI AGCT 4 cut(s) 137, 204, 494, 607
AluI AGCT 4 cut(s) 137, 204, 494, 607
Alw26I GTCTC 4 cut(s) 151, 245, 381, 510
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 3 cut(s) 125, 353, 530
ApoI RAATTY 1 cut(s) 544
AsiGI ACCGGT 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 231, 419
AvaII GGWCC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 112, 365, 542
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 4 cut(s) 151, 245, 381, 510
BfmI CTRYAG 2 cut(s) 351, 528
BglII AGATCT 1 cut(s) 160
BisI GCNGC 4 cut(s) 126, 354, 531, 567
BlsI GCNGC 4 cut(s) 127, 355, 532, 568
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 153, 556
BmsI GCATC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 140
BsaI GGTCTC 2 cut(s) 151, 245
BsaJI CCNNGG 3 cut(s) 21, 112, 559
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 443, 565
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 21, 112, 559
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BseMI GCAATG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 112, 365, 542
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 541
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BsmAI GTCTC 4 cut(s) 151, 245, 381, 510
BsmBI CGTCTC 2 cut(s) 381, 510
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 1 cut(s) 541
Bso31I GGTCTC 2 cut(s) 151, 245
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 566
BspANI GGCC 1 cut(s) 541
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 153, 556
BspMAI CTGCAG 2 cut(s) 355, 532
BspTNI GGTCTC 2 cut(s) 151, 245
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 21, 112, 559
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 3 cut(s) 21, 112, 559
Bst4CI ACNGT 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 30, 130, 202
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 4 cut(s) 151, 245, 381, 510
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 134, 320
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 2 cut(s) 351, 528
BstV1I GCAGC 3 cut(s) 112, 365, 542
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 3 cut(s) 30, 130, 202
CciI TCATGA 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 554
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 4 cut(s) 29, 340, 431, 499
CviJI RGCY 8 cut(s) 125, 132, 137, 204, 494, 541, 569, 607
CviKI_1 RGCY 8 cut(s) 125, 132, 137, 204, 494, 541, 569, 607
CviQI GTAC 1 cut(s) 480
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 3 cut(s) 21, 112, 559
Eco31I GGTCTC 2 cut(s) 151, 245
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 177
EcoT14I CCWWGG 3 cut(s) 21, 112, 559
ErhI CCWWGG 3 cut(s) 21, 112, 559
Esp3I CGTCTC 2 cut(s) 381, 510
FaeI CATG 4 cut(s) 32, 343, 434, 502
FaqI GGGAC 1 cut(s) 72
FatI CATG 4 cut(s) 28, 339, 430, 498
Fnu4HI GCNGC 4 cut(s) 126, 354, 531, 567
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 4 cut(s) 126, 354, 531, 567
GluI GCNGC 4 cut(s) 126, 354, 531, 567
HaeIII GGCC 1 cut(s) 541
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 290
Hin1II CATG 4 cut(s) 32, 343, 434, 502
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 2 cut(s) 41, 77
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 231, 419
Hpy188I TCNGA 4 cut(s) 40, 141, 367, 554
Hpy188III TCNNGA 3 cut(s) 119, 155, 340
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 8 cut(s) 128, 200, 259, 323, 335, 353, 530, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 320
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 32, 343, 434, 502
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 25, 439, 595
LpnPI CCDG 3 cut(s) 106, 168, 255
Lsp1109I GCAGC 3 cut(s) 112, 365, 542
LweI GCATC 1 cut(s) 323
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 346
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 170
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 160
MluCI AATT 3 cut(s) 177, 318, 544
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 3 cut(s) 258, 450, 532
MnlI CCTC 3 cut(s) 95, 115, 384
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 134, 320
NdeII GATC 1 cut(s) 160
NlaIII CATG 4 cut(s) 32, 343, 434, 502
NlaIV GGNNCC 2 cut(s) 153, 556
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PagI TCATGA 1 cut(s) 339
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 4 cut(s) 127, 355, 532, 568
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 153, 556
PspPI GGNCC 1 cut(s) 554
PstI CTGCAG 2 cut(s) 355, 532
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 4 cut(s) 126, 354, 531, 567
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 554
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 35
SetI ASST 7 cut(s) 139, 206, 244, 257, 496, 522, 609
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 2 cut(s) 351, 528
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 32
Sse9I AATT 3 cut(s) 177, 318, 544
SsiI CCGC 1 cut(s) 566
StyI CCWWGG 3 cut(s) 21, 112, 559
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 1 cut(s) 522
TasI AATT 3 cut(s) 177, 318, 544
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 125, 353, 530
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 170, 312, 487
TspRI CASTG 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 1 cut(s) 544
XceI RCATGY 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.