RLG00000015537

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006172
Physical Location & Seq
Reverse (-)
67627825 .. 67628862
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015537

Sequence Viewer

Length: 843 bp
ATGGATATACACAAAGAAAGCAAGGAGCATGCTTCGTCTGACTCCCTTTTACAATGGGGCCAATGGCAACTGCTTGATTCTATCCTCCCAACCGGTGGTTTTGCACATTCCTTTGGTCTTGAGGCTGCAATCCAAGCTCGGATAGTCTCTGGTCCTGAAGATCTTCAAACTTATGTAATTCATGTGTTAGAGAATACTGCAAGCTTACTCCTTCCTTTTGTGTATTCTACAACAATATCGCCTGATTTGGAGAGTTTGCGTAGACATGACAAGATATTGGACGCAATGCTAACTAATGAAGTGGGTAGAAAGGCATCAATTGCACAAGGGTCTGCGCTGATGCGAGTGGCTGCAGCTGTTTATTCGGAAATACCATCTCTTAAATCTATGAGGGAAACTTCTTTGAGTAATGGAGTTGTTTCTTTTCATCATGCTCCTATATTTGGGCTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAGAGATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTTGGACCCCTAGGCGCGGCTGTTCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACCGTCCAGTTGAGGAAGCTTGCCAAACTGTTGCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGCCCAAAGAAACGCATCAACTGGTGGAGGGTTTTGATAATACCACCTCTCCCTTGTTGTGTATTTGTATCTTCCTAAGGATGACACAACGGCTTCTCTATAGATGGTATGGCTATCTGACTTCCGCCAATGAAATTTCAGCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

281

Amino Acids

30.83

Weight (kDa)

5.85

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 49 - 196 2.6e-23 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 566
AciI CCGC 2 cut(s) 566, 819
AcsI RAATTY 2 cut(s) 544, 828
AcuI CTGAAG 2 cut(s) 177, 621
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 3 cut(s) 95, 443, 565
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 7 cut(s) 137, 204, 356, 494, 605, 644, 690
AluI AGCT 7 cut(s) 137, 204, 356, 494, 605, 644, 690
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 4 cut(s) 125, 350, 353, 530
ApoI RAATTY 2 cut(s) 544, 828
AsiGI ACCGGT 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 162
AspA2I CCTAGG 1 cut(s) 559
AspLEI GCGC 2 cut(s) 337, 566
AspS9I GGNCC 4 cut(s) 58, 152, 554, 625
AvaII GGWCC 3 cut(s) 152, 554, 625
AvrII CCTAGG 1 cut(s) 559
AxyI CCTNAGG 1 cut(s) 770
BbvI GCAGC 4 cut(s) 112, 337, 365, 517
BccI CCATC 2 cut(s) 382, 792
BceAI ACGGC 2 cut(s) 800, 821
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 2 cut(s) 351, 793
BfuAI ACCTGC 1 cut(s) 702
BglII AGATCT 1 cut(s) 160
BisI GCNGC 5 cut(s) 126, 351, 354, 531, 567
BlnI CCTAGG 1 cut(s) 559
BlsI GCNGC 5 cut(s) 127, 352, 355, 532, 568
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 3 cut(s) 152, 554, 625
BmgT120I GGNCC 4 cut(s) 58, 152, 554, 625
BmiI GGNNCC 2 cut(s) 59, 556
BmsI GCATC 3 cut(s) 323, 330, 718
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 559
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 443, 565
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 632, 720
Bse21I CCTNAGG 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 1 cut(s) 780
BseLI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BseMI GCAATG 1 cut(s) 291
BseNI ACTGG 2 cut(s) 632, 720
BseXI GCAGC 4 cut(s) 112, 337, 365, 517
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 1 cut(s) 60
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 566, 819
BspANI GGCC 1 cut(s) 60
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 2 cut(s) 59, 556
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 702
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 632, 720
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 559
Bst4CI ACNGT 2 cut(s) 629, 655
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 30, 202, 646
BstDEI CTNAG 1 cut(s) 770
BstF5I GGATG 1 cut(s) 780
BstFNI CGCG 1 cut(s) 566
BstHHI GCGC 2 cut(s) 337, 566
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 134, 320
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 2 cut(s) 351, 793
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 4 cut(s) 112, 337, 365, 517
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 770
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 780
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 3 cut(s) 30, 202, 646
CfoI GCGC 2 cut(s) 337, 566
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 4 cut(s) 58, 152, 554, 625
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 5 cut(s) 29, 182, 266, 431, 499
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 770
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 808
Eco130I CCWWGG 1 cut(s) 559
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 3 cut(s) 152, 554, 625
Eco57I CTGAAG 2 cut(s) 177, 621
Eco81I CCTNAGG 1 cut(s) 770
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 5 cut(s) 32, 185, 269, 434, 502
FatI CATG 5 cut(s) 28, 181, 265, 430, 498
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FokI GGATG 1 cut(s) 787
Fsp4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FspBI CTAG 1 cut(s) 560
GlaI GCGC 2 cut(s) 336, 565
GluI GCNGC 5 cut(s) 126, 351, 354, 531, 567
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 290
HhaI GCGC 2 cut(s) 337, 566
Hin1II CATG 5 cut(s) 32, 185, 269, 434, 502
Hin6I GCGC 2 cut(s) 335, 564
HinP1I GCGC 2 cut(s) 335, 564
HindIII AAGCTT 2 cut(s) 202, 642
HinfI GANTC 3 cut(s) 41, 77, 613
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 5 cut(s) 40, 141, 367, 601, 813
Hpy188III TCNNGA 2 cut(s) 119, 155
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 221, 616
HpyCH4III ACNGT 2 cut(s) 629, 655
HpyCH4V TGCA 8 cut(s) 104, 128, 200, 323, 353, 533, 577, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 320
HpyF3I CTNAG 1 cut(s) 770
Hsp92II CATG 5 cut(s) 32, 185, 269, 434, 502
HspAI GCGC 2 cut(s) 335, 564
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 25, 439, 595
LpnPI CCDG 8 cut(s) 106, 135, 168, 255, 645, 662, 701, 707
Lsp1109I GCAGC 4 cut(s) 112, 337, 365, 517
LweI GCATC 3 cut(s) 323, 330, 718
MaeI CTAG 1 cut(s) 560
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 155, 170, 757
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 160
MluCI AATT 4 cut(s) 177, 318, 544, 828
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 450, 532
MnlI CCTC 6 cut(s) 95, 115, 384, 631, 715, 751
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 318
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 134, 320
NdeII GATC 1 cut(s) 160
NlaIII CATG 5 cut(s) 32, 185, 269, 434, 502
NlaIV GGNNCC 2 cut(s) 59, 556
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 77, 613
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 5 cut(s) 127, 352, 355, 532, 568
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 59, 556
PspPI GGNCC 4 cut(s) 58, 152, 554, 625
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 126, 351, 354, 531, 567
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 4 cut(s) 58, 152, 554, 625
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 35
SetI ASST 9 cut(s) 139, 206, 358, 496, 607, 646, 692, 696, 743
SfaNI GCATC 3 cut(s) 323, 330, 718
SfcI CTRYAG 2 cut(s) 351, 793
SinI GGWCC 3 cut(s) 152, 554, 625
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 32
Sse9I AATT 4 cut(s) 177, 318, 544, 828
SsiI CCGC 2 cut(s) 566, 819
SspMI CTAG 1 cut(s) 560
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 2 cut(s) 629, 655
TasI AATT 4 cut(s) 177, 318, 544, 828
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 2 cut(s) 77, 613
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseI GCWGC 4 cut(s) 125, 350, 353, 530
TspDTI ATGAA 5 cut(s) 170, 312, 416, 487, 840
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 152, 554, 625
XapI RAATTY 2 cut(s) 544, 828
XceI RCATGY 1 cut(s) 32
XmaJI CCTAGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 560
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.