Rw1G004640

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006172
Physical Location & Seq
Reverse (-)
8914316 .. 8925000
10685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004640.1

Sequence Viewer

Length: 795 bp
ATGCAAGAGTTGAACCAAACAACCACTCAATCAAGCAGTGGGATGTCTCCTTATGAGGAGATATTGATTGGTTTTGACATTCCAGTTGCAGGGGAAACCAGTGGCACTGGTAGCAGAACTTGCACGCTTGAAGAGTTTGGGATGGATATAAACAAAGAAACCAAGAAGCATGCTTCGTCAGACTCCCTTTTACAGTGGGGACAATGGCAACTGCTTGATTCTATCCTCCCAACCGGTGGTTTTGCTCATTCCTTTGGTCTTGAGATCGATCTCCAACCTTTCGTAATTCATCTGTTAGAGAATACTGCAACCTTACTCCTTCCTTTTGTGTATTCTACAACAATATCACCTGATTTGGAGACCTTGCGGAAACATGACAAGATGTTGGACGTAATGCTAACTAATGAAGTGGGTAGAAAGGCATCAATAGCACAAGGGTCTGCACTCATGAGAGTGGTTGCAGCAGTGTATTCAGAAATATCTAATGGAGTTGTTTCTTTTCACCATGCTCCTATTTTTGGGCTTTTACGTGGATTGCTTGGGTTGTATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACGATGAGATATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTAGGACCCCTTGGTGCGGCTGTTCTGCAACATCATATTGCTCCTATCTCAGAAGCTATACTGAATCAATGGAAGGACCGTCCAGTTGAGGAAGCATGCCAAACTGTTTCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGTTTTCTAGACTGTTTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

264

Amino Acids

28.99

Weight (kDa)

5.54

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 95 - 221 2.6e-17 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 2 cut(s) 367, 641
AcsI RAATTY 1 cut(s) 619
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 4 cut(s) 89, 236, 518, 640
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 13, 131
AluBI AGCT 3 cut(s) 569, 680, 765
AluI AGCT 3 cut(s) 569, 680, 765
Alw26I GTCTC 2 cut(s) 51, 353
ApeKI GCWGC 2 cut(s) 461, 605
ApoI RAATTY 1 cut(s) 619
AsiGI ACCGGT 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 629, 700
AsuHPI GGTGA 2 cut(s) 339, 494
AvaII GGWCC 2 cut(s) 629, 700
BbvI GCAGC 2 cut(s) 473, 592
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 51, 353
BfaI CTAG 1 cut(s) 777
BisI GCNGC 3 cut(s) 462, 606, 642
BlsI GCNGC 3 cut(s) 463, 607, 643
BmcAI AGTACT 1 cut(s) 556
Bme18I GGWCC 2 cut(s) 629, 700
BmgT120I GGNCC 2 cut(s) 629, 700
BmiI GGNNCC 1 cut(s) 631
BmsI GCATC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 236, 518, 640
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 4 cut(s) 83, 99, 112, 707
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 2 cut(s) 48, 147
BseLI CCNNNNNNNGG 4 cut(s) 89, 236, 518, 640
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 4 cut(s) 83, 99, 112, 707
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 473, 592
BsgI GTGCAG 2 cut(s) 426, 770
BshTI ACCGGT 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 267
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 4 cut(s) 89, 236, 518, 640
BsmAI GTCTC 2 cut(s) 51, 353
BsmFI GGGAC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 264, 268
BspACI CCGC 2 cut(s) 367, 641
BspCNI CTCAG 1 cut(s) 686
BspDI ATCGAT 1 cut(s) 267
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 4 cut(s) 83, 99, 112, 707
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 2 cut(s) 264, 268
BssT1I CCWWGG 1 cut(s) 634
Bst4CI ACNGT 4 cut(s) 195, 704, 730, 783
Bst6I CTCTTC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 125, 171, 721
BstDEI CTNAG 1 cut(s) 673
BstF5I GGATG 2 cut(s) 48, 147
BstKTI GATC 2 cut(s) 267, 271
BstMAI GTCTC 2 cut(s) 51, 353
BstMBI GATC 2 cut(s) 264, 268
BstMWI GCNNNNNNNGC 3 cut(s) 111, 120, 428
BstNSI RCATGY 2 cut(s) 173, 723
BstV1I GCAGC 2 cut(s) 473, 592
Bsu15I ATCGAT 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 267
BtsCI GGATG 2 cut(s) 48, 147
BtsI GCAGTG 2 cut(s) 43, 471
BtsIMutI CAGTG 5 cut(s) 43, 105, 106, 200, 471
Cac8I GCNNGC 3 cut(s) 125, 171, 721
CciI TCATGA 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 629, 700
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 555
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 6 cut(s) 170, 374, 448, 506, 574, 720
CviJI RGCY 6 cut(s) 523, 569, 616, 644, 680, 765
CviKI_1 RGCY 6 cut(s) 523, 569, 616, 644, 680, 765
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 1 cut(s) 673
DpnI GATC 2 cut(s) 266, 270
DpnII GATC 2 cut(s) 264, 268
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 634
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 2 cut(s) 629, 700
EcoO109I RGGNCCY 1 cut(s) 629
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 6 cut(s) 173, 377, 451, 509, 577, 723
FaqI GGGAC 1 cut(s) 213
FatI CATG 6 cut(s) 169, 373, 447, 505, 573, 719
Fnu4HI GCNGC 3 cut(s) 462, 606, 642
FokI GGATG 2 cut(s) 55, 154
Fsp4HI GCNGC 3 cut(s) 462, 606, 642
FspBI CTAG 1 cut(s) 777
GluI GCNGC 3 cut(s) 462, 606, 642
HapII CCGG 1 cut(s) 234
Hin1II CATG 6 cut(s) 173, 377, 451, 509, 577, 723
HinfI GANTC 3 cut(s) 182, 218, 688
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 339, 494
Hpy188I TCNGA 3 cut(s) 181, 475, 676
Hpy188III TCNNGA 5 cut(s) 260, 448, 583, 777, 792
HpyAV CCTTC 2 cut(s) 329, 691
HpyCH4III ACNGT 4 cut(s) 195, 704, 730, 783
HpyCH4IV ACGT 2 cut(s) 390, 529
HpyCH4V TGCA 9 cut(s) 4, 89, 123, 308, 443, 461, 608, 652, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 120, 428
HpyF3I CTNAG 1 cut(s) 673
HpySE526I ACGT 2 cut(s) 390, 529
Hsp92II CATG 6 cut(s) 173, 377, 451, 509, 577, 723
Kzo9I GATC 2 cut(s) 264, 268
LmnI GCTCC 2 cut(s) 514, 670
LpnPI CCDG 9 cut(s) 75, 93, 96, 112, 247, 363, 720, 737, 782
Lsp1109I GCAGC 2 cut(s) 473, 592
LweI GCATC 1 cut(s) 431
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 390, 529
MalI GATC 2 cut(s) 266, 270
MboI GATC 2 cut(s) 264, 268
MboII GAAGA 1 cut(s) 143
MluCI AATT 2 cut(s) 285, 619
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 298, 366
MnlI CCTC 3 cut(s) 49, 236, 706
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 111, 120, 428
NdeII GATC 2 cut(s) 264, 268
NlaIII CATG 6 cut(s) 173, 377, 451, 509, 577, 723
NlaIV GGNNCC 1 cut(s) 631
NspI RCATGY 2 cut(s) 173, 723
PaeI GCATGC 2 cut(s) 173, 723
PagI TCATGA 1 cut(s) 447
PfeI GAWTC 2 cut(s) 218, 688
PflMI CCANNNNNTGG 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 3 cut(s) 463, 607, 643
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 631
PspPI GGNCC 2 cut(s) 629, 700
PspPPI RGGWCCY 1 cut(s) 629
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 452
SatI GCNGC 3 cut(s) 462, 606, 642
Sau3AI GATC 2 cut(s) 264, 268
Sau96I GGNCC 2 cut(s) 629, 700
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 1 cut(s) 176
SfaNI GCATC 1 cut(s) 431
SinI GGWCC 2 cut(s) 629, 700
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SphI GCATGC 2 cut(s) 173, 723
Sse9I AATT 2 cut(s) 285, 619
SsiI CCGC 2 cut(s) 367, 641
SspMI CTAG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 4 cut(s) 195, 704, 730, 783
TaiI ACGT 2 cut(s) 393, 532
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 285, 619
TatI WGTACW 1 cut(s) 554
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 2 cut(s) 218, 688
TscAI CASTG 5 cut(s) 43, 106, 112, 200, 471
TseI GCWGC 2 cut(s) 461, 605
TspDTI ATGAA 3 cut(s) 278, 420, 562
TspRI CASTG 5 cut(s) 43, 106, 112, 200, 471
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 629, 700
XapI RAATTY 1 cut(s) 619
XbaI TCTAGA 1 cut(s) 776
XceI RCATGY 2 cut(s) 173, 723
XspI CTAG 1 cut(s) 777
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.