FvH4_2g00490

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006172
Physical Location & Seq
Forward (+)
559143 .. 560825
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00490.t1

Sequence Viewer

Length: 720 bp
ATGGATATACAAAAAGAAAGCAAGGAGCATGTTTCATCTGACTCCCTTTTACAATGGGGCCAATGGCAACTGCTCGATTCTATCCTCCCAACCGGTGGTTTTGCACATTCCTTTGGTCTTGAGGCTGCAATCCAAGCTCGGATAGTCTCTGGTCCTGAAGATCTCCAAACTTTCGTAATTCATCATTTAGAGAATACTGCAAGCTTACTCCTTCCTTTTGTGTATTCTACTACAATATCGCCTGATTTGGAGAGTTTGCGTAAACATGACAAGATTTTAGATGCAATGCTGACTAATGAAGTGGGTAGAAAGGCGTCGATTGCGCAAGGGTCGGCACTGATGAGAGTGGCTGCAGCCGTGTATTCGGAGATACCGTCTCTTAAATCTATGAGGGAAGCTTCTTTGAGTAATGGAGTTGTTTCTTTTCACCATGCTCCAATATTTGGGCTTATATGTGGATTGCTTGGGTTGGATAGTAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAGAGATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTCGGACCCCTTGGTGCGGCTGTTCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACCGTCCAGTTGAGGAAGCATGCCAAGCTGTTCCTTTGCTTGATATCGTGCAGGGTTGTCATAGTTACCTGTTTTCCAGACTGTTTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

240

Amino Acids

26.08

Weight (kDa)

5.89

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 49 - 196 2.2e-23 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccB7I CCANNNNNTGG 2 cut(s) 95, 443
AciI CCGC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 2 cut(s) 177, 621
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 3 cut(s) 95, 443, 565
AgeI ACCGGT 1 cut(s) 92
AluBI AGCT 6 cut(s) 137, 204, 398, 494, 605, 653
AluI AGCT 6 cut(s) 137, 204, 398, 494, 605, 653
Alw26I GTCTC 2 cut(s) 151, 381
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 4 cut(s) 125, 350, 353, 530
ApoI RAATTY 1 cut(s) 544
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 4 cut(s) 58, 152, 554, 625
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 3 cut(s) 152, 554, 625
BbvI GCAGC 4 cut(s) 112, 337, 365, 517
BceAI ACGGC 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 151, 381
BfmI CTRYAG 1 cut(s) 351
BglII AGATCT 1 cut(s) 160
BisI GCNGC 5 cut(s) 126, 351, 354, 531, 567
BlsI GCNGC 5 cut(s) 127, 352, 355, 532, 568
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 3 cut(s) 152, 554, 625
BmgT120I GGNCC 4 cut(s) 58, 152, 554, 625
BmiI GGNNCC 2 cut(s) 59, 556
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 559
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 443, 565
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 559
BseLI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BseMI GCAATG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 632
BseXI GCAGC 4 cut(s) 112, 337, 365, 517
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 1 cut(s) 60
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BsmAI GTCTC 2 cut(s) 151, 381
BsmBI CGTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 566
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 59, 556
BspMAI CTGCAG 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 559
Bst4CI ACNGT 3 cut(s) 375, 629, 708
BstACI GRCGYC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 202, 646
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 151, 381
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 134, 320, 650
BstNSI RCATGY 2 cut(s) 32, 648
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 4 cut(s) 112, 337, 365, 517
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 202, 646
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 4 cut(s) 58, 152, 554, 625
CseI GACGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 5 cut(s) 29, 266, 431, 499, 645
CviQI GTAC 1 cut(s) 480
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 559
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 3 cut(s) 152, 554, 625
Eco57I CTGAAG 2 cut(s) 177, 621
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 5 cut(s) 32, 269, 434, 502, 648
FatI CATG 5 cut(s) 28, 265, 430, 498, 644
Fnu4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
Fsp4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 1 cut(s) 324
GluI GCNGC 5 cut(s) 126, 351, 354, 531, 567
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 303
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 5 cut(s) 32, 269, 434, 502, 648
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 2 cut(s) 202, 396
HinfI GANTC 3 cut(s) 41, 77, 613
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 5 cut(s) 40, 141, 367, 554, 601
Hpy188III TCNNGA 4 cut(s) 119, 155, 702, 717
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 221, 616
HpyCH4III ACNGT 3 cut(s) 375, 629, 708
HpyCH4V TGCA 8 cut(s) 104, 128, 200, 284, 353, 533, 577, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 320, 650
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 5 cut(s) 32, 269, 434, 502, 648
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 25, 439, 595
LpnPI CCDG 8 cut(s) 106, 135, 168, 255, 645, 662, 707, 715
Lsp1109I GCAGC 4 cut(s) 112, 337, 365, 517
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 689
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 177, 544
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 450, 532
MnlI CCTC 4 cut(s) 95, 115, 384, 631
MseI TTAA 1 cut(s) 381
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 134, 320, 650
NdeII GATC 1 cut(s) 160
NlaIII CATG 5 cut(s) 32, 269, 434, 502, 648
NlaIV GGNNCC 2 cut(s) 59, 556
NsbI TGCGCA 1 cut(s) 324
NspI RCATGY 2 cut(s) 32, 648
PaeI GCATGC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 2 cut(s) 77, 613
PflMI CCANNNNNTGG 2 cut(s) 95, 443
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 5 cut(s) 127, 352, 355, 532, 568
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 59, 556
PspPI GGNCC 4 cut(s) 58, 152, 554, 625
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 126, 351, 354, 531, 567
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 4 cut(s) 58, 152, 554, 625
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 35
SetI ASST 7 cut(s) 139, 206, 400, 496, 607, 655, 696
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 3 cut(s) 152, 554, 625
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 648
Sse9I AATT 2 cut(s) 177, 544
SsiI CCGC 1 cut(s) 566
SspI AATATT 1 cut(s) 441
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 3 cut(s) 375, 629, 708
TaqI TCGA 2 cut(s) 75, 317
TasI AATT 2 cut(s) 177, 544
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 2 cut(s) 77, 613
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 342
TseI GCWGC 4 cut(s) 125, 350, 353, 530
TspDTI ATGAA 4 cut(s) 24, 170, 312, 487
TspRI CASTG 1 cut(s) 342
Van91I CCANNNNNTGG 2 cut(s) 95, 443
VpaK11BI GGWCC 3 cut(s) 152, 554, 625
XapI RAATTY 1 cut(s) 544
XceI RCATGY 2 cut(s) 32, 648
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.