Prupe.8G030900_v2.0.a1

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0006172
Physical Location & Seq
Forward (+)
2941908 .. 2942784
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G030900.1

Sequence Viewer

Length: 831 bp
ATGGAGATAAACAAAGAAAACAGGAAACGTCCTTCATCGGACTCTCTTGTACAGCAAAGTCAATGGCAACTGCACAATTCTGACCCCCCAACAGTTGCCTTTGCTCGTTCTATGGATCTAAATAGAGAAAACAAGAAACGTGCTTCATCAGACTCATTTTTACAGTGGAGCCAATGGCAACTGCTCGATTCTATCCTTCCAACAGGTGGTTTTGCTCACTCTTTTGGTCTTGAGGCAGCAATCCAAGCGAGCATAGTCTCTTGTCCTGAAGATCTCCAAACTTTTGTAATCCATCTGTTGGAGAATACTGGAAGCTTACTCCTTCCTTTTGTCTATTCTACAACAATGTCGCCTGATTCTGAGACCAGGCGCAAACTCGACAAAATGTTGGATGCAATGTTAACTAATGAAGTGAGTAGGAAGGCATCAATTTCACAAGGGTCGGCATTGATGAGGGTGGCTGCATCCGTGTACTCAGAAATACCATATCTTAAATCTATGAGGGAAGCTTCTTTAAGTTCTGGGGTTGTTTCTTTTCACCATGCCCCTATGTTTGGGGTTATATGTGGTCTGCTCGGGTTGGACAGCGCTACTTCTCAAAGGGCTTACATGTTTATTACAATGAGAGATGTTATTTCTGCTGCAACAAGGCTCAATTTGGTAGGGCCCCTTGGTGCGGCTGTACTGCAGCATCAGATTGCTCCTGTTGCTGAAGCTATACTGAATCGATGGAAGGACCGTCCAGTTGAGGAAGCATGCCAAACTGTTGCTTTGCTTGACATTGTGCAAGGTTGCCATGGCTACCTGTTTTCTAGACTGTTCTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

277

Amino Acids

30.5

Weight (kDa)

6.65

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 206, 298
AciI CCGC 1 cut(s) 677
AclWI GGATC 1 cut(s) 123
AcuI CTGAAG 2 cut(s) 288, 732
AfaI GTAC 3 cut(s) 51, 473, 684
AfeI AGCGCT 1 cut(s) 589
AfiI CCNNNNNNNGG 4 cut(s) 206, 298, 554, 676
AflIII ACRYGT 1 cut(s) 609
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 3 cut(s) 315, 509, 716
AluI AGCT 3 cut(s) 315, 509, 716
Alw26I GTCTC 2 cut(s) 262, 356
AlwI GGATC 1 cut(s) 123
Ama87I CYCGRG 1 cut(s) 575
Aor51HI AGCGCT 1 cut(s) 589
AoxI GGCC 1 cut(s) 665
ApaI GGGCCC 1 cut(s) 669
ApeKI GCWGC 4 cut(s) 236, 461, 641, 688
AspLEI GCGC 2 cut(s) 372, 590
AspS9I GGNCC 3 cut(s) 665, 666, 736
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 669
BbvI GCAGC 4 cut(s) 248, 448, 628, 700
BccI CCATC 2 cut(s) 300, 723
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 262, 356
BfaI CTAG 1 cut(s) 813
BfmI CTRYAG 1 cut(s) 686
BfoI RGCGCY 1 cut(s) 591
BglII AGATCT 1 cut(s) 271
BisI GCNGC 5 cut(s) 237, 462, 642, 678, 689
BlsI GCNGC 5 cut(s) 238, 463, 643, 679, 690
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 665, 666, 736
BmiI GGNNCC 3 cut(s) 170, 667, 668
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 4 cut(s) 382, 434, 473, 700
BpuEI CTTGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 727
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 670, 796
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 298, 554, 676
Bse1I ACTGG 2 cut(s) 313, 743
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 367
BseCI ATCGAT 1 cut(s) 727
BseDI CCNNGG 2 cut(s) 670, 796
BseGI GGATG 2 cut(s) 397, 464
BseLI CCNNNNNNNGG 4 cut(s) 206, 298, 554, 676
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 351, 489
BseNI ACTGG 2 cut(s) 313, 743
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 4 cut(s) 248, 448, 628, 700
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 1 cut(s) 667
BshVI ATCGAT 1 cut(s) 727
BsiHKCI CYCGRG 1 cut(s) 575
BslI CCNNNNNNNGG 4 cut(s) 206, 298, 554, 676
BsmAI GTCTC 2 cut(s) 262, 356
BsnI GGCC 1 cut(s) 667
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 575
Bsp120I GGGCCC 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 669
Bsp1407I TGTACA 1 cut(s) 49
Bsp143I GATC 2 cut(s) 115, 271
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 1 cut(s) 677
BspANI GGCC 1 cut(s) 667
BspCNI CTCAG 2 cut(s) 352, 488
BspDI ATCGAT 1 cut(s) 727
BspLI GGNNCC 3 cut(s) 170, 667, 668
BspMAI CTGCAG 1 cut(s) 690
BspPI GGATC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 49
BsrI ACTGG 2 cut(s) 313, 743
BssECI CCNNGG 2 cut(s) 670, 796
BssMI GATC 2 cut(s) 115, 271
BssT1I CCWWGG 2 cut(s) 670, 796
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 5 cut(s) 94, 165, 740, 766, 819
BstAUI TGTACA 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 250, 757
BstDEI CTNAG 2 cut(s) 360, 475
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 2 cut(s) 397, 464
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 2 cut(s) 372, 590
BstKTI GATC 2 cut(s) 118, 274
BstMAI GTCTC 2 cut(s) 262, 356
BstMBI GATC 2 cut(s) 115, 271
BstMWI GCNNNNNNNGC 2 cut(s) 245, 707
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 613, 759
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 686
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 4 cut(s) 248, 448, 628, 700
BstX2I RGATCY 2 cut(s) 115, 271
BstYI RGATCY 2 cut(s) 115, 271
Bsu15I ATCGAT 1 cut(s) 727
BsuRI GGCC 1 cut(s) 667
BsuTUI ATCGAT 1 cut(s) 727
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 2 cut(s) 397, 464
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 250, 757
CfoI GCGC 2 cut(s) 372, 590
Cfr13I GGNCC 3 cut(s) 665, 666, 736
ClaI ATCGAT 1 cut(s) 727
Csp6I GTAC 3 cut(s) 50, 472, 683
CviAII CATG 4 cut(s) 542, 610, 756, 797
CviQI GTAC 3 cut(s) 50, 472, 683
DdeI CTNAG 2 cut(s) 360, 475
DpnI GATC 2 cut(s) 117, 273
DpnII GATC 2 cut(s) 115, 271
Eco130I CCWWGG 2 cut(s) 670, 796
Eco24I GRGCYC 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 736
Eco47III AGCGCT 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 288, 732
Eco88I CYCGRG 1 cut(s) 575
EcoO109I RGGNCCY 2 cut(s) 665, 666
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 2 cut(s) 670, 796
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 670, 796
FaeI CATG 4 cut(s) 545, 613, 759, 800
FatI CATG 4 cut(s) 541, 609, 755, 796
Fnu4HI GCNGC 5 cut(s) 237, 462, 642, 678, 689
FokI GGATG 2 cut(s) 404, 451
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 5 cut(s) 237, 462, 642, 678, 689
FspBI CTAG 1 cut(s) 813
GlaI GCGC 2 cut(s) 371, 589
GluI GCNGC 5 cut(s) 237, 462, 642, 678, 689
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 1 cut(s) 667
HhaI GCGC 2 cut(s) 372, 590
Hin1II CATG 4 cut(s) 545, 613, 759, 800
Hin6I GCGC 2 cut(s) 370, 588
HinP1I GCGC 2 cut(s) 370, 588
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 2 cut(s) 313, 507
HinfI GANTC 5 cut(s) 41, 152, 188, 356, 724
HpaI GTTAAC 1 cut(s) 402
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 402, 472
Hpy188I TCNGA 6 cut(s) 40, 82, 151, 361, 478, 696
Hpy188III TCNNGA 3 cut(s) 230, 266, 813
Hpy8I GTNNAC 2 cut(s) 402, 472
HpyAV CCTTC 5 cut(s) 42, 206, 332, 415, 727
HpyCH4III ACNGT 5 cut(s) 94, 165, 740, 766, 819
HpyCH4IV ACGT 2 cut(s) 28, 139
HpyCH4V TGCA 6 cut(s) 73, 395, 464, 644, 688, 787
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 707
HpyF3I CTNAG 2 cut(s) 360, 475
HpySE526I ACGT 2 cut(s) 28, 139
Hsp92II CATG 4 cut(s) 545, 613, 759, 800
HspAI GCGC 2 cut(s) 370, 588
KspAI GTTAAC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 115, 271
LmnI GCTCC 2 cut(s) 168, 706
Lsp1109I GCAGC 4 cut(s) 248, 448, 628, 700
LweI GCATC 4 cut(s) 382, 434, 473, 700
MaeI CTAG 1 cut(s) 813
MaeII ACGT 2 cut(s) 28, 139
MalI GATC 2 cut(s) 117, 273
MboI GATC 2 cut(s) 115, 271
MboII GAAGA 1 cut(s) 281
MflI RGATCY 2 cut(s) 115, 271
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 3 cut(s) 76, 429, 655
MlyI GAGTC 2 cut(s) 35, 146
MmeI TCCRAC 4 cut(s) 224, 279, 369, 561
MnlI CCTC 4 cut(s) 226, 447, 495, 742
MseI TTAA 4 cut(s) 401, 492, 515, 829
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 245, 707
NcoI CCATGG 1 cut(s) 796
NdeII GATC 2 cut(s) 115, 271
NlaIII CATG 4 cut(s) 545, 613, 759, 800
NlaIV GGNNCC 3 cut(s) 170, 667, 668
NspI RCATGY 2 cut(s) 613, 759
PaeI GCATGC 1 cut(s) 759
PciI ACATGT 1 cut(s) 609
PfeI GAWTC 3 cut(s) 188, 356, 724
PflMI CCANNNNNTGG 2 cut(s) 206, 298
PkrI GCNGC 5 cut(s) 238, 463, 643, 679, 690
PleI GAGTC 2 cut(s) 35, 146
PpsI GAGTC 2 cut(s) 35, 146
PscI ACATGT 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 3 cut(s) 170, 667, 668
PspOMI GGGCCC 1 cut(s) 665
PspPI GGNCC 3 cut(s) 665, 666, 736
PstI CTGCAG 1 cut(s) 690
PsuI RGATCY 2 cut(s) 115, 271
RsaI GTAC 3 cut(s) 51, 473, 684
RsaNI GTAC 3 cut(s) 50, 472, 683
SaqAI TTAA 4 cut(s) 401, 492, 515, 829
SatI GCNGC 5 cut(s) 237, 462, 642, 678, 689
Sau3AI GATC 2 cut(s) 115, 271
Sau96I GGNCC 3 cut(s) 665, 666, 736
SchI GAGTC 2 cut(s) 35, 146
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 669
SetI ASST 8 cut(s) 31, 142, 208, 317, 511, 718, 793, 807
SfaNI GCATC 4 cut(s) 382, 434, 473, 700
SfcI CTRYAG 1 cut(s) 686
SinI GGWCC 1 cut(s) 736
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 1 cut(s) 759
Sse9I AATT 3 cut(s) 76, 429, 655
SsiI CCGC 1 cut(s) 677
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 2 cut(s) 670, 796
TaaI ACNGT 5 cut(s) 94, 165, 740, 766, 819
TaiI ACGT 2 cut(s) 31, 142
TaqI TCGA 3 cut(s) 186, 378, 727
TasI AATT 3 cut(s) 76, 429, 655
TatI WGTACW 3 cut(s) 49, 471, 682
TauI GCSGC 1 cut(s) 680
TfiI GAWTC 3 cut(s) 188, 356, 724
Tru1I TTAA 4 cut(s) 401, 492, 515, 829
Tru9I TTAA 4 cut(s) 401, 492, 515, 829
TscAI CASTG 1 cut(s) 170
TseI GCWGC 4 cut(s) 236, 461, 641, 688
TspDTI ATGAA 3 cut(s) 24, 135, 423
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 1 cut(s) 170
Van91I CCANNNNNTGG 2 cut(s) 206, 298
VpaK11BI GGWCC 1 cut(s) 736
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 2 cut(s) 613, 759
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.