Rh6AG006200

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006172
Physical Location & Seq
Forward (+)
792680 .. 793715
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG006200.1

Sequence Viewer

Length: 825 bp
ATGGATATACACAAAGAAAGCAAGGAGCATGCTTCGTCAGACTCCCTTTTACAATGGGGCCAATGGCAACTGCTTGATTCTATCCTCCCAACCGGTGGTTTTGCACATTCCTTTGGTCTTGAGGCTGCAATCCAAGCTCGGATAGTCTCTGGTCCTGAAGATCTCCAAACTTTTGTAATTCATCATTTAGAGAATACTGCAAGCTTACTCCTTCCTTTTGTGTATTCTACAACAATATCGCCTGATTTGGAGAGTTTGCGTAGACATGACAAGATATTGGACGCAATGCTAACTAATGAAGTGGGTAGAAAGGCATCAATTGCACAAGGGTCTGCGCTGATGCGAGTAGCTGCAGCTGTTTATTCAGAAATACCATCTCTTAAATCTATGAGGGAAACTTCTTTGAGTAATGGAGTTGTTTCTTTTCATCATGCTCCTATATTTGGGCTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAGAGATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTTGGACCCCTAGGTGCGGCTGTTCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACCGTCCAGTTGAGGAAGCATGCCAAACTGTTGCTTTGCTTGATATCGTGCAAGGCCCAAATAGACGCATCCACCAGTGGAGGGTTTTGATATACCACCTCTCCCTTGTTGTGTATCTGTATCTTCCTAGGATGACACAACGGCTTCTCTATAGTTGTTATGGCTACCTGACTTCCGCCAATGAAATTTCAGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

274

Amino Acids

30.33

Weight (kDa)

6.45

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 49 - 196 4.4e-23 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 262
AciI CCGC 2 cut(s) 566, 801
AcsI RAATTY 2 cut(s) 544, 810
AcuI CTGAAG 2 cut(s) 177, 621
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 4 cut(s) 95, 443, 565, 706
AgeI ACCGGT 1 cut(s) 92
AluBI AGCT 7 cut(s) 137, 204, 350, 356, 494, 605, 818
AluI AGCT 7 cut(s) 137, 204, 350, 356, 494, 605, 818
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 2 cut(s) 58, 679
ApeKI GCWGC 4 cut(s) 125, 350, 353, 530
ApoI RAATTY 2 cut(s) 544, 810
AsiGI ACCGGT 1 cut(s) 92
AspA2I CCTAGG 2 cut(s) 559, 752
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 5 cut(s) 58, 152, 554, 625, 680
AvaII GGWCC 3 cut(s) 152, 554, 625
AvrII CCTAGG 2 cut(s) 559, 752
BbvI GCAGC 4 cut(s) 112, 337, 365, 517
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 782
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 2 cut(s) 560, 753
BfmI CTRYAG 2 cut(s) 351, 775
BglII AGATCT 1 cut(s) 160
BisI GCNGC 5 cut(s) 126, 351, 354, 531, 567
BlnI CCTAGG 2 cut(s) 559, 752
BlsI GCNGC 5 cut(s) 127, 352, 355, 532, 568
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 3 cut(s) 152, 554, 625
BmgT120I GGNCC 5 cut(s) 58, 152, 554, 625, 680
BmiI GGNNCC 2 cut(s) 59, 556
BmsI GCATC 3 cut(s) 323, 330, 702
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 559, 752
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 443, 565, 706
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 632, 700
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 559, 752
BseGI GGATG 2 cut(s) 693, 762
BseLI CCNNNNNNNGG 4 cut(s) 95, 443, 565, 706
BseMI GCAATG 1 cut(s) 291
BseNI ACTGG 2 cut(s) 632, 700
BseXI GCAGC 4 cut(s) 112, 337, 365, 517
BshFI GGCC 2 cut(s) 60, 681
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 4 cut(s) 95, 443, 565, 706
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 2 cut(s) 60, 681
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 566, 801
BspANI GGCC 2 cut(s) 60, 681
BspLI GGNNCC 2 cut(s) 59, 556
BspMAI CTGCAG 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 632, 700
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 559, 752
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 559, 752
Bst4CI ACNGT 2 cut(s) 629, 655
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 30, 202, 646
BstF5I GGATG 2 cut(s) 693, 762
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 134, 320
BstNSI RCATGY 2 cut(s) 32, 648
BstSFI CTRYAG 2 cut(s) 351, 775
BstV1I GCAGC 4 cut(s) 112, 337, 365, 517
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 2 cut(s) 60, 681
BtsCI GGATG 2 cut(s) 693, 762
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 3 cut(s) 30, 202, 646
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 58, 152, 554, 625, 680
CseI GACGC 2 cut(s) 290, 699
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 5 cut(s) 29, 266, 431, 499, 645
CviQI GTAC 1 cut(s) 480
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 790
Eco130I CCWWGG 2 cut(s) 559, 752
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 3 cut(s) 152, 554, 625
Eco57I CTGAAG 2 cut(s) 177, 621
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 2 cut(s) 559, 752
ErhI CCWWGG 2 cut(s) 559, 752
FaeI CATG 5 cut(s) 32, 269, 434, 502, 648
FatI CATG 5 cut(s) 28, 265, 430, 498, 644
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FokI GGATG 2 cut(s) 680, 769
Fsp4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FspBI CTAG 2 cut(s) 560, 753
GlaI GCGC 1 cut(s) 336
GluI GCNGC 5 cut(s) 126, 351, 354, 531, 567
HaeIII GGCC 2 cut(s) 60, 681
HapII CCGG 1 cut(s) 93
HgaI GACGC 2 cut(s) 290, 699
HhaI GCGC 1 cut(s) 337
Hin1II CATG 5 cut(s) 32, 269, 434, 502, 648
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 3 cut(s) 41, 77, 613
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 4 cut(s) 40, 141, 367, 601
Hpy188III TCNNGA 2 cut(s) 119, 155
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 221, 616
HpyCH4III ACNGT 2 cut(s) 629, 655
HpyCH4V TGCA 8 cut(s) 104, 128, 200, 323, 353, 533, 577, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 320
Hsp92II CATG 5 cut(s) 32, 269, 434, 502, 648
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 25, 439, 595
LpnPI CCDG 7 cut(s) 106, 135, 168, 255, 645, 713, 806
Lsp1109I GCAGC 4 cut(s) 112, 337, 365, 517
LweI GCATC 3 cut(s) 323, 330, 702
MaeI CTAG 2 cut(s) 560, 753
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 170, 740
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 160
MluCI AATT 4 cut(s) 177, 318, 544, 810
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 450, 532
MnlI CCTC 6 cut(s) 95, 115, 384, 631, 699, 734
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 2 cut(s) 356, 818
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 134, 320
NdeII GATC 1 cut(s) 160
NlaIII CATG 5 cut(s) 32, 269, 434, 502, 648
NlaIV GGNNCC 2 cut(s) 59, 556
NspI RCATGY 2 cut(s) 32, 648
PaeI GCATGC 2 cut(s) 32, 648
PfeI GAWTC 2 cut(s) 77, 613
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 5 cut(s) 127, 352, 355, 532, 568
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 59, 556
PspPI GGNCC 5 cut(s) 58, 152, 554, 625, 680
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 2 cut(s) 356, 818
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 126, 351, 354, 531, 567
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 5 cut(s) 58, 152, 554, 625, 680
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 35
SfaNI GCATC 3 cut(s) 323, 330, 702
SfcI CTRYAG 2 cut(s) 351, 775
SinI GGWCC 3 cut(s) 152, 554, 625
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 2 cut(s) 32, 648
Sse9I AATT 4 cut(s) 177, 318, 544, 810
SsiI CCGC 2 cut(s) 566, 801
SspMI CTAG 2 cut(s) 560, 753
StyI CCWWGG 2 cut(s) 559, 752
TaaI ACNGT 2 cut(s) 629, 655
TasI AATT 4 cut(s) 177, 318, 544, 810
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 2 cut(s) 77, 613
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 707
TseI GCWGC 4 cut(s) 125, 350, 353, 530
TspDTI ATGAA 5 cut(s) 170, 312, 416, 487, 822
TspRI CASTG 1 cut(s) 707
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 152, 554, 625
XapI RAATTY 2 cut(s) 544, 810
XceI RCATGY 2 cut(s) 32, 648
XmaJI CCTAGG 2 cut(s) 559, 752
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 2 cut(s) 560, 753
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.