Rh1DG034100

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006172
Physical Location & Seq
Reverse (-)
5001719 .. 5002333
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG034100.1

Sequence Viewer

Length: 615 bp
ATGGATATGAACAAAGAAACCAAGGAGCATGCTTCGTCAGACTCCCTTTTACAATGGGGACAATGGCAACTGCTTGATTCTCTCCTCCCAACCGGTGGTTTTGCTCATTCCCTTGGTCTTGAGGCTGCAAGCCAAGCTCAGATGGTCTCGGTTCCTGAAGATCTCCAAACTTTTGTAATTCATCTGTTAGAGAATACTGCAAGCTTACTGCTTCCTTTTGTGTATTCTACAACAATATCACCTGATTTGGAGACCTTGCAGAAACACGACAAGATGTTGGATGCAATGCTAACTAATGAAGTGGGTAGAAAGGCATCAATTGCACAAGGGTCTGCACTCATGGGAGTGACTGCAGCAGTGTATTCAGAAATACCGTCTCTTAAATCTGTGAGGGAAACTTCTGTAAGTAATGGAGTTGTTTCTATTCACCATGCTCCTATATTTGGGTTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCGCAATGAGAGATGTTATTTCTGCAGCAACAAGGCCGAATTTGGTCGGACCCCTTGGTGCGGTTGTTCTGCAACATCATATTGCTCCTATATCTCCAAAGCTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

204

Amino Acids

21.95

Weight (kDa)

5.68

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 51 - 196 2.2e-20 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AciI CCGC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 3 cut(s) 95, 443, 565
AgeI ACCGGT 1 cut(s) 92
AluBI AGCT 4 cut(s) 137, 204, 494, 607
AluI AGCT 4 cut(s) 137, 204, 494, 607
Alw26I GTCTC 3 cut(s) 151, 245, 381
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 3 cut(s) 125, 353, 530
ApoI RAATTY 1 cut(s) 544
AsiGI ACCGGT 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 231, 419
AvaII GGWCC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 112, 365, 542
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 3 cut(s) 151, 245, 381
BfmI CTRYAG 2 cut(s) 351, 528
BglII AGATCT 1 cut(s) 160
BisI GCNGC 3 cut(s) 126, 354, 531
BlsI GCNGC 3 cut(s) 127, 355, 532
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 153, 556
BmsI GCATC 2 cut(s) 271, 323
BpuEI CTTGAG 1 cut(s) 140
BsaI GGTCTC 2 cut(s) 151, 245
BsaJI CCNNGG 3 cut(s) 21, 112, 559
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 443, 565
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 291, 516
BseDI CCNNGG 3 cut(s) 21, 112, 559
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BseMI GCAATG 2 cut(s) 291, 516
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 112, 365, 542
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 541
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 95, 443, 565
BsmAI GTCTC 3 cut(s) 151, 245, 381
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 1 cut(s) 541
Bso31I GGTCTC 2 cut(s) 151, 245
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 566
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 153, 556
BspMAI CTGCAG 2 cut(s) 355, 532
BspTNI GGTCTC 2 cut(s) 151, 245
BsrDI GCAATG 2 cut(s) 291, 516
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 21, 112, 559
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 3 cut(s) 21, 112, 559
Bst4CI ACNGT 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 30, 130, 202
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 3 cut(s) 151, 245, 381
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 134, 320
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 2 cut(s) 351, 528
BstV1I GCAGC 3 cut(s) 112, 365, 542
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 3 cut(s) 30, 130, 202
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 554
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 4 cut(s) 29, 340, 431, 499
CviJI RGCY 7 cut(s) 125, 132, 137, 204, 494, 541, 607
CviKI_1 RGCY 7 cut(s) 125, 132, 137, 204, 494, 541, 607
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 3 cut(s) 21, 112, 559
Eco31I GGTCTC 2 cut(s) 151, 245
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 177
EcoT14I CCWWGG 3 cut(s) 21, 112, 559
ErhI CCWWGG 3 cut(s) 21, 112, 559
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 4 cut(s) 32, 343, 434, 502
FaqI GGGAC 1 cut(s) 72
FatI CATG 4 cut(s) 28, 339, 430, 498
Fnu4HI GCNGC 3 cut(s) 126, 354, 531
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 126, 354, 531
GluI GCNGC 3 cut(s) 126, 354, 531
HaeIII GGCC 1 cut(s) 541
HapII CCGG 1 cut(s) 93
Hin1II CATG 4 cut(s) 32, 343, 434, 502
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 2 cut(s) 41, 77
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 231, 419
Hpy188I TCNGA 4 cut(s) 40, 141, 367, 554
Hpy188III TCNNGA 2 cut(s) 119, 155
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 9 cut(s) 128, 200, 259, 284, 323, 335, 353, 530, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 320
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 4 cut(s) 32, 343, 434, 502
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 25, 439, 595
LpnPI CCDG 3 cut(s) 106, 168, 255
Lsp1109I GCAGC 3 cut(s) 112, 365, 542
LweI GCATC 2 cut(s) 271, 323
MaeIII GTNAC 1 cut(s) 346
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 170
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 160
MluCI AATT 3 cut(s) 177, 318, 544
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 3 cut(s) 258, 450, 532
MnlI CCTC 3 cut(s) 95, 115, 384
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 134, 320
NdeII GATC 1 cut(s) 160
NlaIII CATG 4 cut(s) 32, 343, 434, 502
NlaIV GGNNCC 2 cut(s) 153, 556
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 3 cut(s) 127, 355, 532
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 153, 556
PspPI GGNCC 1 cut(s) 554
PstI CTGCAG 2 cut(s) 355, 532
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 126, 354, 531
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 554
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 35
SetI ASST 6 cut(s) 139, 206, 244, 257, 496, 609
SfaNI GCATC 2 cut(s) 271, 323
SfcI CTRYAG 2 cut(s) 351, 528
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 32
Sse9I AATT 3 cut(s) 177, 318, 544
SsiI CCGC 1 cut(s) 566
StyI CCWWGG 3 cut(s) 21, 112, 559
TaaI ACNGT 1 cut(s) 375
TasI AATT 3 cut(s) 177, 318, 544
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 125, 353, 530
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 23, 170, 312, 487
TspRI CASTG 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 1 cut(s) 544
XceI RCATGY 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.