AT1G22210

trehalose biosynthetic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004284
Physical Location & Seq
Forward (+)
7841432 .. 7844056
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22210.1

Sequence Viewer

Length: 963 bp
ATGAAGATTACGGATATTTCCGGAAAGATCGAGACTTTGGTTGATTCCTTAAGGGATATGTCCCCGACCCGTGTCAGATCTTCCTTCTCTGATGAACATGTATCCGAGAACGATGACGAGAGAAGCTCCTGGATTGCTCTTCATCCGTCAGCATTGGATATGTTCGAACAAATCATGCGTGATGCTGAAGGCAAACAAATTATTATGTTTCTTGATTACGACGGAACTCTCTCGCTAATCACTGAAGATCACGACAGAGCCTACATAACCGACGAGATGCGAGAAGTTGTAAAGGAAGTGGCTACATATTTCAAGACAGCGATCATCAGCGGACGAAGCACTGACAAAGTACAGAGTTTTGTGAAACTCACTGGTATTCACTACGCTGGGAGCCACGGCATGGACATTAAGGGTCCGACAAATACCGATCAGAGTAACCAAGAAGAAGTGATGTTTCAACCTGCAAGTGACTATTTACCGATGATTGACGAGGTGGTTAATGTTTTGAAGGAAAAGACAAAATCTATCCCTGGAGCTACGGTCGAGCACAACAAGTTTTGTCTAACAGTACATTTTCGTCGGGTCGATGAAACGGGATGGGCTGCATTAGCTGAGCAAGTGAGATTGGTTCTCATTGATTATCCGAAATTGAGACTGACACAAGGCAGAAAGGTCTTAGAACTCCGACCTTCCATCAAATGGGACAAGGGAAAGGCTCTCGAATTTTTGCTAAACTCATTAGGGATAGCAGAATCTAAAGATGTTTTACCGGTTTACATTGGAGATGACCGTACTGATGAAGATGCATTTAAGGTTTTATGTGAAAGGGGACAAGGTTTTGGGATTATCGTCTCAAAAACTATTAAGGAAACGTACGCCTCTTACTCTCTTCAAGACCCATCTCAGGTTAAAGAATTTCTGGAGCGTTTGGTAAAGTGGAAGAAACAAACACTTGGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005946 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009266 GO:0009269 GO:0009311 GO:0009312 GO:0009405 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010182 GO:0015927 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0023052 GO:0030154 GO:0030435 GO:0030437 GO:0030447 GO:0031668 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032505 GO:0032991 GO:0033554 GO:0034293 GO:0034599 GO:0034605 GO:0034614 GO:0034637 GO:0035251 GO:0035690 GO:0036168 GO:0036180 GO:0040007 GO:0042221 GO:0042493 GO:0042542 GO:0042546 GO:0042578 GO:0042631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0043935 GO:0044085 GO:0044182 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046351 GO:0046527 GO:0046677 GO:0046686 GO:0048316 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051321 GO:0051704 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070301 GO:0070413 GO:0070414 GO:0070415 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071462 GO:0071465 GO:0071496 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090441 GO:0097237 GO:0104004 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1903046 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00190 ko00500 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map00500 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Glyco_transf_20 Trehalose_PPase

Protein Analysis

320

Amino Acids

36.36

Weight (kDa)

5.27

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trehalose_PPase PF02358 70 - 301 1.7e-70 Trehalose-phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
AccB7I CCANNNNNTGG 2 cut(s) 400, 699
AccIII TCCGGA 1 cut(s) 20
AciI CCGC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 722, 914
AcuI CTGAAG 2 cut(s) 207, 264
AfaI GTAC 4 cut(s) 351, 570, 793, 875
AfiI CCNNNNNNNGG 3 cut(s) 400, 699, 904
AflII CTTAAG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 97
AgeI ACCGGT 1 cut(s) 769
AgsI TTSAA 4 cut(s) 313, 458, 508, 893
AjnI CCWGG 2 cut(s) 128, 529
AluBI AGCT 3 cut(s) 126, 536, 611
AluI AGCT 3 cut(s) 126, 536, 611
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 3 cut(s) 26, 646, 856
Aor13HI TCCGGA 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 2 cut(s) 722, 914
AsiGI ACCGGT 1 cut(s) 769
AspS9I GGNCC 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 589
BccI CCATC 3 cut(s) 591, 701, 907
BceAI ACGGC 1 cut(s) 412
BciT130I CCWGG 2 cut(s) 130, 531
BciVI GTATCC 1 cut(s) 112
BcoDI GTCTC 3 cut(s) 26, 646, 856
BfrI CTTAAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 469
BfuI GTATCC 1 cut(s) 112
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 603
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 604
Bme1390I CCNGG 2 cut(s) 130, 531
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 392, 414
BmrFI CCNGG 2 cut(s) 130, 531
BmsI GCATC 3 cut(s) 172, 267, 793
BoxI GACNNNNGTC 1 cut(s) 71
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 2 cut(s) 552, 941
Bpu1102I GCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 394, 529
BsaWI WCCGGW 2 cut(s) 20, 769
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 699, 904
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 1 cut(s) 376
BseAI TCCGGA 1 cut(s) 20
BseBI CCWGG 2 cut(s) 130, 531
BseDI CCNNGG 2 cut(s) 394, 529
BseGI GGATG 2 cut(s) 142, 602
BseLI CCNNNNNNNGG 3 cut(s) 400, 699, 904
BseMII CTCAG 2 cut(s) 603, 917
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 1 cut(s) 589
BseYI CCCAGC 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 543
BshTI ACCGGT 1 cut(s) 769
BsiEI CGRYCG 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 21, 770
BsiWI CGTACG 1 cut(s) 873
BslFI GGGAC 3 cut(s) 46, 716, 843
BslI CCNNNNNNNGG 3 cut(s) 400, 699, 904
BsmAI GTCTC 3 cut(s) 26, 646, 856
BsmBI CGTCTC 1 cut(s) 856
BsmFI GGGAC 3 cut(s) 46, 716, 843
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 549
Bsp13I TCCGGA 1 cut(s) 20
Bsp143I GATC 5 cut(s) 27, 77, 247, 321, 427
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 604, 916
BspEI TCCGGA 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 392, 414
BspMI ACCTGC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 394, 529
BssMI GATC 5 cut(s) 27, 77, 247, 321, 427
Bst2UI CCWGG 2 cut(s) 130, 531
Bst4CI ACNGT 3 cut(s) 541, 568, 791
Bst6I CTCTTC 2 cut(s) 144, 894
BstAFI CTTAAG 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 612, 676, 903
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 142, 602
BstKTI GATC 5 cut(s) 30, 80, 250, 324, 430
BstMAI GTCTC 3 cut(s) 26, 646, 856
BstMBI GATC 5 cut(s) 27, 77, 247, 321, 427
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 2 cut(s) 336, 608
BstNI CCWGG 2 cut(s) 130, 531
BstNSI RCATGY 1 cut(s) 101
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 128, 529
BstV1I GCAGC 1 cut(s) 589
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuI GTATCC 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 2 cut(s) 142, 602
BtsIMutI CAGTG 3 cut(s) 240, 339, 369
BveI ACCTGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 4 cut(s) 350, 569, 792, 874
CspAI ACCGGT 1 cut(s) 769
CviAII CATG 3 cut(s) 98, 175, 400
CviJI RGCY 8 cut(s) 126, 260, 302, 393, 536, 602, 611, 716
CviKI_1 RGCY 8 cut(s) 126, 260, 302, 393, 536, 602, 611, 716
CviQI GTAC 4 cut(s) 350, 569, 792, 874
DdeI CTNAG 3 cut(s) 612, 676, 903
DpnI GATC 5 cut(s) 29, 79, 249, 323, 429
DpnII GATC 5 cut(s) 27, 77, 247, 321, 427
Eam1104I CTCTTC 2 cut(s) 144, 894
EarI CTCTTC 2 cut(s) 144, 894
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 207, 264
EcoRII CCWGG 2 cut(s) 128, 529
EcoT22I ATGCAT 1 cut(s) 808
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 3 cut(s) 101, 178, 403
FaiI YATR 9 cut(s) 59, 99, 161, 176, 206, 266, 307, 401, 820
FaqI GGGAC 3 cut(s) 46, 716, 843
FatI CATG 3 cut(s) 97, 174, 399
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 2 cut(s) 129, 609
Fsp4HI GCNGC 1 cut(s) 603
GluI GCNGC 1 cut(s) 603
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 552, 941
HapII CCGG 2 cut(s) 21, 770
Hin1II CATG 3 cut(s) 101, 178, 403
HinfI GANTC 2 cut(s) 44, 752
HpaII CCGG 2 cut(s) 21, 770
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 7 cut(s) 77, 91, 106, 417, 432, 645, 686
Hpy188III TCNNGA 8 cut(s) 21, 31, 212, 251, 313, 719, 893, 920
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 3 cut(s) 224, 275, 582
HpyAV CCTTC 4 cut(s) 94, 182, 502, 699
HpyCH4III ACNGT 3 cut(s) 541, 568, 791
HpyCH4IV ACGT 1 cut(s) 872
HpyCH4V TGCA 3 cut(s) 464, 605, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 608
HpyF3I CTNAG 3 cut(s) 612, 676, 903
HpySE526I ACGT 1 cut(s) 872
Hsp92II CATG 3 cut(s) 101, 178, 403
Kpn2I TCCGGA 1 cut(s) 20
Kzo9I GATC 5 cut(s) 27, 77, 247, 321, 427
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 4 cut(s) 131, 390, 533, 922
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 3 cut(s) 172, 267, 793
MaeII ACGT 1 cut(s) 872
MaeIII GTNAC 2 cut(s) 434, 467
MalI GATC 5 cut(s) 29, 79, 249, 323, 429
MboI GATC 5 cut(s) 27, 77, 247, 321, 427
MboII GAAGA 8 cut(s) 16, 72, 131, 257, 455, 812, 881, 952
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 4 cut(s) 198, 647, 722, 914
MmeI TCCRAC 2 cut(s) 440, 709
MnlI CCTC 2 cut(s) 484, 889
Mph1103I ATGCAT 1 cut(s) 808
MroI TCCGGA 1 cut(s) 20
MseI TTAA 6 cut(s) 50, 408, 498, 810, 864, 909
MspA1I CMGCKG 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 2 cut(s) 21, 770
MspR9I CCNGG 2 cut(s) 130, 531
MvaI CCWGG 2 cut(s) 130, 531
MwoI GCNNNNNNNGC 2 cut(s) 336, 608
NdeII GATC 5 cut(s) 27, 77, 247, 321, 427
NlaIII CATG 3 cut(s) 101, 178, 403
NlaIV GGNNCC 2 cut(s) 392, 414
NmuCI GTSAC 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 101
NspV TTCGAA 1 cut(s) 165
PciI ACATGT 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 44, 752
Pfl23II CGTACG 1 cut(s) 873
PflMI CCANNNNNTGG 2 cut(s) 400, 699
PfoI TCCNGGA 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 769
PkrI GCNGC 1 cut(s) 604
PscI ACATGT 1 cut(s) 97
PshAI GACNNNNGTC 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 128, 529
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 2 cut(s) 128, 529
PspLI CGTACG 1 cut(s) 873
PspN4I GGNNCC 2 cut(s) 392, 414
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 4 cut(s) 351, 570, 793, 875
RsaNI GTAC 4 cut(s) 350, 569, 792, 874
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 6 cut(s) 50, 408, 498, 810, 864, 909
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 5 cut(s) 27, 77, 247, 321, 427
Sau96I GGNCC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 130, 531
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 3 cut(s) 172, 267, 793
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 4 cut(s) 198, 647, 722, 914
SsiI CCGC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 128, 529
TaaI ACNGT 3 cut(s) 541, 568, 791
TaiI ACGT 1 cut(s) 875
TaqI TCGA 5 cut(s) 30, 165, 543, 585, 720
TasI AATT 4 cut(s) 198, 647, 722, 914
TatI WGTACW 2 cut(s) 349, 568
TfiI GAWTC 2 cut(s) 44, 752
Tru1I TTAA 6 cut(s) 50, 408, 498, 810, 864, 909
Tru9I TTAA 6 cut(s) 50, 408, 498, 810, 864, 909
TscAI CASTG 3 cut(s) 247, 346, 376
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 5 cut(s) 17, 108, 131, 603, 813
TspGWI ACGGA 3 cut(s) 26, 135, 237
TspRI CASTG 3 cut(s) 247, 346, 376
Van91I CCANNNNNTGG 2 cut(s) 400, 699
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 2 cut(s) 722, 914
XceI RCATGY 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.