Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Reverse (-)

13194145 .. 13197278

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21200.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACTAAGCAAAATGTGGTAGTGTCCGACGCTGACTCCCAAATCATGAACATGGCGGTATCGGTTGCTGTCTCGAACGCTTCGGTGTTCCCTGCGGCGGCGGAGAAGCCTCCGATGGCGCCGGGTGGGTATATCTCCATTTCGAGGAAGAAGTTGATGAACTTGAAGAACCTTGACATTATTAATGGAGGTGAAAGAATCACCTCTTGGGTGGACTCAATGAAGGCTTCATCTCCCACCCATATTCAGTCCTCTACTTGTTTGATGAAGGACCAGAGTTCTTGGATGCTGCAACATCCATCTGCGCTAGATATGTTCGAGCAAATAATTGAAGCTTCCCAAGGAAAGCAAATAGTCATGTTCCTCGACTATGACGGCACTCTCTCCCCAATAGTGGAAGACCCAGATCGAGCTTTTATGTCTGATTCTATGAGGAAGACAGTGAAAAGACTTGCTAGGTGTTTCCCCACTGCAATAGTAAGCGGCAGATGTAGGGATAAGGTCTACAAATTTGTACGATTGGCAGAGCTTTACTATGCTGGTAGCCATGGTATGGACATTAAAGGTCCAGCAAAAGGTTCCAAATACAAGAAAGGTGGCCAAGGCGTTCTTTGCCAGCCAGCTAGCGAGTTTCTTCCAATGATTGATGAAGTTTATAAGCTACTGATTGAGAAGACCAAATCAACTCCTGGAGCTAAAGTTGAGAACAACAAGTTCTGTCTCTCTGTGCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCCTTGCAAGTTAGATCAGTTTTGAAGGAGTACCCACAGCTTAGACTCTCCCAAGGAAGAAAGGTCTTGGAAATCCGTCCTACCATCAAATGGGACAAAGGCAAGGCTCTTGAATTTTTGCTGGAGTCACTTGGATACGCCAATTGCAACGATGTTTTCCCTGTGTATATTGGAGATGACCGAACCGATGAAGATGCGTTTAAGGTATTAAGAGAAAGAGGACAAGGGTTTGGCATTCTCGTCTCCAAAATTCCAAAGGAGACCAGCGCAACTTATTCTTTACAGGAACCAGCTGAGGTCATGGACTTTCTCCAGCGCTTGGTTGAGTGGAAAAGACAAGCAGTACGGGGCCAAGCTATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

378

Amino Acids

42.27

Weight (kDa)

9.04

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	121 - 353	1.8e-76	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	3 cut(s)	553, 858, 1087
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	5 cut(s)	56, 95, 98, 101, 483
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	3 cut(s)	509, 881, 1017
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	3 cut(s)	516, 800, 1113
AfeI	AGCGCT	1 cut(s)	1085
AfiI	CCNNNNNNNGG	7 cut(s)	97, 144, 394, 553, 575, 858, 1087
AgsI	TTSAA	4 cut(s)	166, 332, 793, 881
AjnI	CCWGG	1 cut(s)	688
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	9 cut(s)	335, 413, 529, 623, 661, 695, 808, 1061, 1124
AluI	AGCT	9 cut(s)	335, 413, 529, 623, 661, 695, 808, 1061, 1124
Alw26I	GTCTC	4 cut(s)	76, 725, 1015, 1022
Aor51HI	AGCGCT	1 cut(s)	1085
AoxI	GGCC	3 cut(s)	598, 768, 1117
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	3 cut(s)	509, 881, 1017
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	4 cut(s)	121, 307, 1037, 1086
AspS9I	GGNCC	3 cut(s)	271, 566, 1117
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	193, 203
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	271, 566
BalI	TGGCCA	1 cut(s)	600
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	3 cut(s)	405, 443, 680
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	3 cut(s)	109, 307, 860
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	896
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	4 cut(s)	76, 725, 1015, 1022
BfaI	CTAG	3 cut(s)	308, 456, 624
BfoI	RGCGCY	2 cut(s)	122, 1087
BfuI	GTATCC	1 cut(s)	896
BisI	GCNGC	4 cut(s)	96, 99, 290, 484
BlsI	GCNGC	4 cut(s)	97, 100, 291, 485
Bme1390I	CCNGG	2 cut(s)	123, 690
Bme18I	GGWCC	2 cut(s)	271, 566
BmgT120I	GGNCC	3 cut(s)	271, 566, 1117
BmiI	GGNNCC	4 cut(s)	120, 580, 1056, 1118
BmrFI	CCNGG	2 cut(s)	123, 690
BmsI	GCATC	2 cut(s)	276, 952
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	3 cut(s)	405, 443, 680
BpmI	CTGGAG	3 cut(s)	711, 911, 1064
Bpu10I	CCTNAGC	1 cut(s)	1062
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	1022
BsaJI	CCNNGG	4 cut(s)	340, 547, 601, 820
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 684, 714
Bsc4I	CCNNNNNNNGG	7 cut(s)	97, 144, 394, 553, 575, 858, 1087
Bse1I	ACTGG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	4 cut(s)	340, 547, 601, 820
BseGI	GGATG	2 cut(s)	291, 295
BseLI	CCNNNNNNNGG	7 cut(s)	97, 144, 394, 553, 575, 858, 1087
BseMII	CTCAG	1 cut(s)	1053
BseNI	ACTGG	1 cut(s)	771
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	3 cut(s)	600, 770, 1119
BshNI	GGYRCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	7 cut(s)	97, 144, 394, 553, 575, 858, 1087
BsmAI	GTCTC	4 cut(s)	76, 725, 1015, 1022
BsmBI	CGTCTC	1 cut(s)	1015
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	1002
BsnI	GGCC	3 cut(s)	600, 770, 1119
Bso31I	GGTCTC	1 cut(s)	1022
Bsp143I	GATC	2 cut(s)	406, 782
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	5 cut(s)	56, 95, 98, 101, 483
BspANI	GGCC	3 cut(s)	600, 770, 1119
BspCNI	CTCAG	1 cut(s)	1054
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	120, 580, 1056, 1118
BspOI	GCTAGC	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	1022
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	4 cut(s)	340, 547, 601, 820
BssMI	GATC	2 cut(s)	406, 782
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	4 cut(s)	340, 547, 601, 820
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	442
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	617, 621, 625
BstDEI	CTNAG	3 cut(s)	6, 809, 1062
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	291, 295
BstH2I	RGCGCY	2 cut(s)	122, 1087
BstHHI	GCGC	4 cut(s)	121, 307, 1037, 1086
BstKTI	GATC	2 cut(s)	409, 785
BstMAI	GTCTC	4 cut(s)	76, 725, 1015, 1022
BstMBI	GATC	2 cut(s)	406, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	612
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	121, 688
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	405, 443, 680
BsuI	GTATCC	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	600, 770, 1119
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	291, 295
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	447, 468
Cac8I	GCNNGC	3 cut(s)	617, 621, 625
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	4 cut(s)	121, 307, 1037, 1086
Cfr13I	GGNCC	3 cut(s)	271, 566, 1117
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	515, 799, 1112
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	5 cut(s)	46, 52, 358, 548, 1069
CviQI	GTAC	3 cut(s)	515, 799, 1112
DdeI	CTNAG	3 cut(s)	6, 809, 1062
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	408, 784
DpnII	GATC	2 cut(s)	406, 782
EaeI	YGGCCR	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	4 cut(s)	340, 547, 601, 820
Eco31I	GGTCTC	1 cut(s)	1022
Eco47I	GGWCC	2 cut(s)	271, 566
Eco47III	AGCGCT	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	4 cut(s)	340, 547, 601, 820
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	4 cut(s)	340, 547, 601, 820
Esp3I	CGTCTC	1 cut(s)	1015
FaeI	CATG	5 cut(s)	49, 55, 361, 551, 1072
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	5 cut(s)	45, 51, 357, 547, 1068
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	96, 99, 290, 484
FokI	GGATG	2 cut(s)	282, 298
Fsp4HI	GCNGC	4 cut(s)	96, 99, 290, 484
FspBI	CTAG	3 cut(s)	308, 456, 624
GlaI	GCGC	4 cut(s)	120, 306, 1036, 1085
GluI	GCNGC	4 cut(s)	96, 99, 290, 484
GsuI	CTGGAG	3 cut(s)	711, 911, 1064
HaeII	RGCGCY	2 cut(s)	122, 1087
HaeIII	GGCC	3 cut(s)	600, 770, 1119
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	4 cut(s)	121, 307, 1037, 1086
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	49, 55, 361, 551, 1072
Hin6I	GCGC	4 cut(s)	119, 305, 1035, 1084
HinP1I	GCGC	4 cut(s)	119, 305, 1035, 1084
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	6 cut(s)	35, 198, 215, 425, 813, 893
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	193, 203
Hpy166II	GTNNAC	3 cut(s)	214, 505, 764
Hpy188I	TCNGA	3 cut(s)	28, 114, 424
Hpy188III	TCNNGA	3 cut(s)	46, 73, 878
Hpy8I	GTNNAC	3 cut(s)	214, 505, 764
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	217, 262, 787
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	292, 473, 730, 775, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	612
HpyF3I	CTNAG	3 cut(s)	6, 809, 1062
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	49, 55, 361, 551, 1072
HspAI	GCGC	4 cut(s)	119, 305, 1035, 1084
KasI	GGCGCC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	406, 782
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	276, 952
MaeI	CTAG	3 cut(s)	308, 456, 624
MaeIII	GTNAC	1 cut(s)	894
MalI	GATC	2 cut(s)	408, 784
MboI	GATC	2 cut(s)	406, 782
MboII	GAAGA	8 cut(s)	160, 178, 410, 448, 626, 685, 837, 971
MfeI	CAATTG	1 cut(s)	910
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	5 cut(s)	327, 509, 881, 910, 1017
MluNI	TGGCCA	1 cut(s)	600
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	4 cut(s)	29, 209, 807, 902
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	9 cut(s)	120, 138, 182, 214, 262, 374, 426, 980, 1057
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	4 cut(s)	183, 561, 969, 977
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	1061
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	123, 690
MunI	CAATTG	1 cut(s)	910
Mva1269I	GAATGC	1 cut(s)	1002
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	1 cut(s)	612
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	406, 782
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	5 cut(s)	49, 55, 361, 551, 1072
NlaIV	GGNNCC	4 cut(s)	120, 580, 1056, 1118
NmuCI	GTSAC	1 cut(s)	894
PagI	TCATGA	1 cut(s)	45
PctI	GAATGC	1 cut(s)	1002
PfeI	GAWTC	2 cut(s)	198, 425
PflMI	CCANNNNNTGG	3 cut(s)	553, 858, 1087
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	97, 100, 291, 485
PleI	GAGTC	4 cut(s)	29, 209, 807, 901
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	4 cut(s)	29, 209, 807, 901
PshBI	ATTAAT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	4 cut(s)	120, 580, 1056, 1118
PspPI	GGNCC	3 cut(s)	271, 566, 1117
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	3 cut(s)	516, 800, 1113
RsaNI	GTAC	3 cut(s)	515, 799, 1112
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	183, 561, 969, 977
SatI	GCNGC	4 cut(s)	96, 99, 290, 484
Sau3AI	GATC	2 cut(s)	406, 782
Sau96I	GGNCC	3 cut(s)	271, 566, 1117
SchI	GAGTC	4 cut(s)	29, 209, 807, 902
ScrFI	CCNGG	2 cut(s)	123, 690
SfaNI	GCATC	2 cut(s)	276, 952
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	2 cut(s)	271, 566
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	327, 509, 881, 910, 1017
SsiI	CCGC	5 cut(s)	56, 95, 98, 101, 483
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	3 cut(s)	308, 456, 624
StyD4I	CCNGG	2 cut(s)	121, 688
StyI	CCWWGG	4 cut(s)	340, 547, 601, 820
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	5 cut(s)	74, 143, 318, 366, 409
TaqII	GACCGA	1 cut(s)	963
TasI	AATT	5 cut(s)	327, 509, 881, 910, 1017
TauI	GCSGC	3 cut(s)	98, 101, 486
TfiI	GAWTC	2 cut(s)	198, 425
Tru1I	TTAA	4 cut(s)	183, 561, 969, 977
Tru9I	TTAA	4 cut(s)	183, 561, 969, 977
TscAI	CASTG	2 cut(s)	447, 475
TseFI	GTSAC	1 cut(s)	894
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	8 cut(s)	62, 173, 219, 236, 281, 663, 762, 972
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	447, 475
Van91I	CCANNNNNTGG	3 cut(s)	553, 858, 1087
VpaK11BI	GGWCC	2 cut(s)	271, 566
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	3 cut(s)	509, 881, 1017
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	3 cut(s)	308, 456, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.