RLG00000018138

Removes the phosphate from trehalose 6-phosphate to produce free trehalose

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
25758012 .. 25760809
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018138

Sequence Viewer

Length: 1281 bp
ATGGTGTATACTCCTATACGTGCCCCTGAGGTGCCATACACGGAGACGGTGGGGGCCCACGTGGAGGGGGATGGTGGTGGTGGTGGTGGTGGCGGGGGTCTTAGTCTATTACCGTTTCTGAAATCTTTTGAGACAGTTCGGTTAGAGATGACTAAGCAAAATGTGGTAGTGTCCGATGCTGACTCCCAAATCATGAACATGGCGATATCGGTTGCCGTGACGAACTCTTCGATTTTCAGTGCGGCGGCGGAGAAGCCTCCGATGGCGCCGGGTGGGTATATATCCATCTCGAGGAAGAGATTGATGAACTTGAAGAACCTTGACATTATTAATGGAGGTGAAAGACTCACCTCTTGGGTGGATTCGATGAAGGCTTCATCTCCCACCCATATTCAGTCTTCCCCTTGCTTGATGAAAGGCCAGAGTTCTTGGATGCTTCAGCACCCATCCGCCTTAGACACGTTTGACAAAATCATGGAAGCTTCCCAAGGCAAGCAAATTGTCATGTTTCTGGACTATGATGGCACTCTTTCGCCCATAGTCGAAGACCCAGATCGAGCTTATATGTCCGATTCAATGAGGAAGACCGTGAAACAACTTGCTAGGTGTTTTCCCACTGCAATAGTGAGTGGAAGATGCAGAGACAAGGTGTACAAATTTGTACGATTGGCAGAGTTGTACTATGCTGGTAGCCATGGTATGGACATTAAAGGTCCAGCAAAAGGTTCCAAATACAAGAAAGGTAGCCAAGGTGTTCTTTGCCAACCAGCAAGTGAGTTTCTTCCTATGATTGATGAAGTTTATAAGCTACTGGTTGAGAAGACCAAATCAACTCCTGGAGCAAAAGTTGAGAACAACAAGTTCTGTCTCTCTGTGCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCCTCGCAAGTTAGATCAGTTTTGAAGGAGTACCCACAGCTTAGACTCTCCCAAGGAAGAAAGGTTTTGGAAATTCGTCCTACCATCAAATGGGACAAAGGCAAGGCTCTTGAATTTTTGCTGGAGTCACTTGGATACGCCAATTGCAATGATGTTTTTCCTGTGTACATTGGAGATGACCGAACCGATGAAGATGCGTTTAAGGTATTGAGAGACAGAGGACAAGGTTTTGGCATTCTCGTCTCAAAAATTCCAAAGGAAACCAGCGCAACTTATTCTTTACAGGAACCGGCTGAGGTTATGGACTTTCTCCAGCGTTTGGTTGAGTGGAAAAGACAAGCAGTACGGAGCCAAGCCATGTTGTAA

Protein Analysis

427

Amino Acids

47.26

Weight (kDa)

8.84

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trehalose_PPase PF02358 170 - 402 1.2e-76 Trehalose-phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
AccB1I GGYRCC 2 cut(s) 31, 265
AccB7I CCANNNNNTGG 3 cut(s) 700, 1005, 1234
AccI GTMKAC 1 cut(s) 8
AciI CCGC 5 cut(s) 93, 242, 245, 248, 450
AcsI RAATTY 4 cut(s) 656, 987, 1028, 1164
AcuI CTGAAG 1 cut(s) 422
AcvI CACGTG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 6 cut(s) 653, 663, 680, 947, 1082, 1260
AfiI CCNNNNNNNGG 6 cut(s) 64, 291, 700, 722, 1005, 1234
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 4 cut(s) 313, 576, 940, 1028
AjnI CCWGG 1 cut(s) 835
AluBI AGCT 4 cut(s) 482, 560, 808, 955
AluI AGCT 4 cut(s) 482, 560, 808, 955
Alw26I GTCTC 6 cut(s) 38, 125, 636, 872, 1122, 1162
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 3 cut(s) 54, 418, 915
ApaI GGGCCC 1 cut(s) 58
ApoI RAATTY 4 cut(s) 656, 987, 1028, 1164
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AseI ATTAAT 1 cut(s) 330
AspLEI GCGC 2 cut(s) 268, 1184
AspS9I GGNCC 3 cut(s) 54, 55, 713
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 340, 350
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 713
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 2 cut(s) 25, 58
BanI GGYRCC 2 cut(s) 31, 265
BanII GRGCYC 1 cut(s) 58
BbrPI CACGTG 1 cut(s) 61
BbsI GAAGAC 4 cut(s) 390, 552, 590, 827
BbvCI CCTCAGC 1 cut(s) 1209
BccI CCATC 6 cut(s) 65, 256, 293, 454, 515, 1007
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 1091, 1125
BciT130I CCWGG 1 cut(s) 837
BciVI GTATCC 1 cut(s) 1043
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 6 cut(s) 38, 125, 636, 872, 1122, 1162
BfaI CTAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 1043
BisI GCNGC 2 cut(s) 243, 246
BlsI GCNGC 2 cut(s) 244, 247
Bme1390I CCNGG 2 cut(s) 270, 837
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 54, 55, 713
BmiI GGNNCC 7 cut(s) 33, 55, 56, 267, 727, 1203, 1265
BmrFI CCNGG 2 cut(s) 270, 837
BmsI GCATC 4 cut(s) 166, 423, 626, 1099
BpiI GAAGAC 4 cut(s) 390, 552, 590, 827
BpmI CTGGAG 3 cut(s) 858, 1058, 1211
Bpu10I CCTNAGC 1 cut(s) 1209
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 2 cut(s) 20, 61
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 4 cut(s) 487, 694, 748, 967
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 291, 700, 722, 1005, 1234
Bse118I RCCGGY 1 cut(s) 1204
Bse1I ACTGG 2 cut(s) 816, 918
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 1069
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 4 cut(s) 487, 694, 748, 967
BseGI GGATG 3 cut(s) 76, 438, 446
BseLI CCNNNNNNNGG 6 cut(s) 64, 291, 700, 722, 1005, 1234
BseMI GCAATG 1 cut(s) 1069
BseMII CTCAG 2 cut(s) 18, 1200
BseNI ACTGG 2 cut(s) 816, 918
BseSI GKGCMC 2 cut(s) 25, 58
BshFI GGCC 3 cut(s) 56, 420, 917
BshNI GGYRCC 2 cut(s) 31, 265
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 269, 1205
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 6 cut(s) 64, 291, 700, 722, 1005, 1234
BsmAI GTCTC 6 cut(s) 38, 125, 636, 872, 1122, 1162
BsmBI CGTCTC 2 cut(s) 38, 1162
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 1 cut(s) 1149
BsnI GGCC 3 cut(s) 56, 420, 917
BsoBI CYCGRG 1 cut(s) 289
Bsp120I GGGCCC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 25, 58
Bsp1407I TGTACA 2 cut(s) 651, 1080
Bsp143I GATC 2 cut(s) 553, 929
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 5 cut(s) 93, 242, 245, 248, 450
BspANI GGCC 3 cut(s) 56, 420, 917
BspCNI CTCAG 2 cut(s) 19, 1201
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 7 cut(s) 33, 55, 56, 267, 727, 1203, 1265
BspT107I GGYRCC 2 cut(s) 31, 265
BsrDI GCAATG 1 cut(s) 1069
BsrFI RCCGGY 1 cut(s) 1204
BsrGI TGTACA 2 cut(s) 651, 1080
BsrI ACTGG 2 cut(s) 816, 918
BssAI RCCGGY 1 cut(s) 1204
BssECI CCNNGG 4 cut(s) 487, 694, 748, 967
BssMI GATC 2 cut(s) 553, 929
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 266
BssT1I CCWWGG 4 cut(s) 487, 694, 748, 967
Bst1107I GTATAC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 4 cut(s) 49, 114, 136, 589
Bst6I CTCTTC 2 cut(s) 232, 290
BstACI GRCGYC 1 cut(s) 266
BstAUI TGTACA 2 cut(s) 651, 1080
BstBAI YACGTR 2 cut(s) 20, 61
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 6 cut(s) 27, 101, 153, 454, 956, 1209
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 3 cut(s) 76, 438, 446
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 268, 1184
BstKTI GATC 2 cut(s) 556, 932
BstMAI GTCTC 6 cut(s) 38, 125, 636, 872, 1122, 1162
BstMBI GATC 2 cut(s) 553, 929
BstNI CCWGG 1 cut(s) 837
BstSCI CCNGG 2 cut(s) 268, 835
BstSLI GKGCMC 2 cut(s) 25, 58
BstV2I GAAGAC 4 cut(s) 390, 552, 590, 827
BstZ17I GTATAC 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 3 cut(s) 56, 420, 917
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 3 cut(s) 76, 438, 446
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 244, 615
Cac8I GCNNGC 1 cut(s) 494
CciI TCATGA 1 cut(s) 192
CfoI GCGC 2 cut(s) 268, 1184
Cfr10I RCCGGY 1 cut(s) 1204
Cfr13I GGNCC 3 cut(s) 54, 55, 713
Csp6I GTAC 6 cut(s) 652, 662, 679, 946, 1081, 1259
CviAII CATG 6 cut(s) 193, 199, 475, 505, 695, 1273
CviQI GTAC 6 cut(s) 652, 662, 679, 946, 1081, 1259
DdeI CTNAG 6 cut(s) 27, 101, 153, 454, 956, 1209
DinI GGCGCC 1 cut(s) 267
DpnI GATC 2 cut(s) 555, 931
DpnII GATC 2 cut(s) 553, 929
Eam1104I CTCTTC 2 cut(s) 232, 290
EarI CTCTTC 2 cut(s) 232, 290
EciI GGCGGA 2 cut(s) 263, 439
Eco130I CCWWGG 4 cut(s) 487, 694, 748, 967
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 422
Eco72I CACGTG 1 cut(s) 61
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 835
EcoRV GATATC 1 cut(s) 207
EcoT14I CCWWGG 4 cut(s) 487, 694, 748, 967
EcoT38I GRGCYC 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
ErhI CCWWGG 4 cut(s) 487, 694, 748, 967
Esp3I CGTCTC 2 cut(s) 38, 1162
FaeI CATG 6 cut(s) 196, 202, 478, 508, 698, 1276
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 1 cut(s) 1022
FatI CATG 6 cut(s) 192, 198, 474, 504, 694, 1272
FauI CCCGC 1 cut(s) 86
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 243, 246
FokI GGATG 3 cut(s) 83, 433, 445
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 243, 246
FspBI CTAG 1 cut(s) 603
GlaI GCGC 2 cut(s) 267, 1183
GluI GCNGC 2 cut(s) 243, 246
GsuI CTGGAG 3 cut(s) 858, 1058, 1211
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 3 cut(s) 56, 420, 917
HapII CCGG 2 cut(s) 269, 1205
HhaI GCGC 2 cut(s) 268, 1184
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 6 cut(s) 196, 202, 478, 508, 698, 1276
Hin6I GCGC 2 cut(s) 266, 1182
HinP1I GCGC 2 cut(s) 266, 1182
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 6 cut(s) 182, 345, 362, 572, 960, 1040
HpaII CCGG 2 cut(s) 269, 1205
HphI GGTGA 2 cut(s) 340, 350
Hpy166II GTNNAC 4 cut(s) 9, 652, 911, 1081
Hpy188I TCNGA 4 cut(s) 120, 175, 261, 571
Hpy188III TCNNGA 4 cut(s) 193, 289, 512, 1025
Hpy8I GTNNAC 4 cut(s) 9, 652, 911, 1081
HpyAV CCTTC 2 cut(s) 364, 934
HpyCH4III ACNGT 4 cut(s) 49, 114, 136, 589
HpyCH4IV ACGT 3 cut(s) 19, 60, 461
HpyCH4V TGCA 4 cut(s) 620, 639, 877, 1062
HpyF3I CTNAG 6 cut(s) 27, 101, 153, 454, 956, 1209
HpySE526I ACGT 3 cut(s) 19, 60, 461
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 6 cut(s) 196, 202, 478, 508, 698, 1276
HspAI GCGC 2 cut(s) 266, 1182
KasI GGCGCC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 553, 929
LmnI GCTCC 2 cut(s) 839, 1263
LweI GCATC 4 cut(s) 166, 423, 626, 1099
MaeI CTAG 1 cut(s) 603
MaeII ACGT 3 cut(s) 19, 60, 461
MaeIII GTNAC 2 cut(s) 217, 1041
MalI GATC 2 cut(s) 555, 931
MboI GATC 2 cut(s) 553, 929
MfeI CAATTG 1 cut(s) 1057
MhlI GDGCHC 2 cut(s) 25, 58
MluCI AATT 6 cut(s) 498, 656, 987, 1028, 1057, 1164
Mly113I GGCGCC 1 cut(s) 266
MlyI GAGTC 4 cut(s) 176, 339, 954, 1049
MseI TTAA 3 cut(s) 330, 708, 1116
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 2 cut(s) 269, 1205
MspR9I CCNGG 2 cut(s) 270, 837
MunI CAATTG 1 cut(s) 1057
Mva1269I GAATGC 1 cut(s) 1149
MvaI CCWGG 1 cut(s) 837
NarI GGCGCC 1 cut(s) 266
NciI CCSGG 1 cut(s) 270
NcoI CCATGG 1 cut(s) 694
NdeII GATC 2 cut(s) 553, 929
NlaIII CATG 6 cut(s) 196, 202, 478, 508, 698, 1276
NlaIV GGNNCC 7 cut(s) 33, 55, 56, 267, 727, 1203, 1265
NmuCI GTSAC 2 cut(s) 217, 1041
PaeR7I CTCGAG 1 cut(s) 289
PagI TCATGA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 1149
PfeI GAWTC 2 cut(s) 362, 572
PflMI CCANNNNNTGG 3 cut(s) 700, 1005, 1234
PfoI TCCNGGA 1 cut(s) 835
PkrI GCNGC 2 cut(s) 244, 247
PleI GAGTC 4 cut(s) 176, 339, 954, 1048
PluTI GGCGCC 1 cut(s) 269
PmaCI CACGTG 1 cut(s) 61
PmlI CACGTG 1 cut(s) 61
PpsI GAGTC 4 cut(s) 176, 339, 954, 1048
Ppu21I YACGTR 2 cut(s) 20, 61
PshBI ATTAAT 1 cut(s) 330
PsiI TTATAA 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 835
PspCI CACGTG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 7 cut(s) 33, 55, 56, 267, 727, 1203, 1265
PspOMI GGGCCC 1 cut(s) 54
PspPI GGNCC 3 cut(s) 54, 55, 713
RsaI GTAC 6 cut(s) 653, 663, 680, 947, 1082, 1260
RsaNI GTAC 6 cut(s) 652, 662, 679, 946, 1081, 1259
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 3 cut(s) 330, 708, 1116
SatI GCNGC 2 cut(s) 243, 246
Sau3AI GATC 2 cut(s) 553, 929
Sau96I GGNCC 3 cut(s) 54, 55, 713
SchI GAGTC 4 cut(s) 176, 339, 954, 1049
ScrFI CCNGG 2 cut(s) 270, 837
SduI GDGCHC 2 cut(s) 25, 58
SfaNI GCATC 4 cut(s) 166, 423, 626, 1099
SfoI GGCGCC 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 6 cut(s) 498, 656, 987, 1028, 1057, 1164
SsiI CCGC 5 cut(s) 93, 242, 245, 248, 450
SspDI GGCGCC 1 cut(s) 265
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 268, 835
StyI CCWWGG 4 cut(s) 487, 694, 748, 967
TaaI ACNGT 4 cut(s) 49, 114, 136, 589
TaiI ACGT 3 cut(s) 22, 63, 464
TaqI TCGA 5 cut(s) 230, 290, 365, 543, 556
TaqII GACCGA 1 cut(s) 1110
TasI AATT 6 cut(s) 498, 656, 987, 1028, 1057, 1164
TatI WGTACW 3 cut(s) 651, 678, 1080
TauI GCSGC 2 cut(s) 245, 248
TfiI GAWTC 2 cut(s) 362, 572
Tru1I TTAA 3 cut(s) 330, 708, 1116
Tru9I TTAA 3 cut(s) 330, 708, 1116
TscAI CASTG 2 cut(s) 244, 622
TseFI GTSAC 2 cut(s) 217, 1041
Tsp45I GTSAC 2 cut(s) 217, 1041
TspDTI ATGAA 8 cut(s) 209, 320, 366, 383, 428, 810, 909, 1119
TspGWI ACGGA 2 cut(s) 56, 1276
TspRI CASTG 2 cut(s) 244, 622
Van91I CCANNNNNTGG 3 cut(s) 700, 1005, 1234
VpaK11BI GGWCC 1 cut(s) 713
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 4 cut(s) 656, 987, 1028, 1164
XhoI CTCGAG 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.