Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Reverse (-)

18448865 .. 18451305

Gene Structure 2441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTTAGATTCATAGAAGAAAACACAAAACTTGTAGAAAAAGAAACCGGGAACAAATCAAACAACGATGTAACAACAACGAAGAAGAAAGCTCTTCAAGATATCATTATCAACAATGGAGTAGGATTGATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCCCCTACTCATCTTAAATCTTTGTTGAAACAAAGCTCTTGGCTCACGGAACATCCATCAGCTTTGGATATGTTTGAAGAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACTTTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCTAGAAAGATGAGAAGAACTGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCATAGAAAAGGTTTATAACTTTGTAAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACATCAAAGGACCAGAGCAAGGGTCCAAATATGAGCAAATTTTACAGGATAGTAAATCTCTTCTTTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATCATAAATTAGTGGAGAAAACAAAATCTACTCCCGGAGCCCAAGTAGAGAACAACAAATTTTGTGTCTCTGTTCACTTCCGACGCGTAGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAATGAAAGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTGGAGGTTCGTCCGATTATTAAATGGGACAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAATTGTACCGACGTTTTCCCTCTTTATATCGGAGATGATCGCACCGACGAAGATGCATTCAAGGTATTGAGAGAACGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGACTAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGTGGAATGGAAACAATTGAGATCTGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

349

Amino Acids

40.0

Weight (kDa)

7.59

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	94 - 329	1.2e-79	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AasI	GACNNNNNNGTC	1 cut(s)	964
AccII	CGCG	2 cut(s)	669, 965
AclI	AACGTT	1 cut(s)	1012
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	3 cut(s)	513, 641, 944
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	452, 844
AfiI	CCNNNNNNNGG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	5 cut(s)	98, 150, 190, 239, 898
AluBI	AGCT	7 cut(s)	92, 158, 198, 224, 332, 551, 736
AluI	AGCT	7 cut(s)	92, 158, 198, 224, 332, 551, 736
Alw26I	GTCTC	2 cut(s)	655, 950
AlwI	GGATC	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	806
AoxI	GGCC	1 cut(s)	390
ApoI	RAATTY	3 cut(s)	513, 641, 944
ArsI	GACNNNNNNTTYG	4 cut(s)	633, 665, 907, 939
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	965
AspS9I	GGNCC	2 cut(s)	485, 498
AsuC2I	CCSGG	2 cut(s)	49, 618
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	2 cut(s)	485, 498
BanII	GRGCYC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	922
BccI	CCATC	2 cut(s)	226, 287
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	4 cut(s)	787, 821, 872, 906
BciVI	GTATCC	1 cut(s)	824
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	2 cut(s)	49, 618
BcoDI	GTCTC	2 cut(s)	655, 950
BfaI	CTAG	3 cut(s)	342, 371, 960
BfmI	CTRYAG	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	824
BglII	AGATCT	1 cut(s)	1037
Bme1390I	CCNGG	2 cut(s)	49, 618
Bme18I	GGWCC	2 cut(s)	485, 498
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	485, 498
BmiI	GGNNCC	2 cut(s)	499, 622
BmrFI	CCNGG	2 cut(s)	49, 618
BmsI	GCATC	2 cut(s)	398, 880
BpiI	GAAGAC	1 cut(s)	922
BpmI	CTGGAG	1 cut(s)	706
Bpu10I	CCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	2 cut(s)	49, 618
BsaBI	GATNNNNATC	1 cut(s)	324
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	324
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	669, 965
BshFI	GGCC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	806
BsiSI	CCGG	2 cut(s)	48, 618
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	655, 950
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	2 cut(s)	893, 930
BsnI	GGCC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	2 cut(s)	669, 965
BspLI	GGNNCC	2 cut(s)	499, 622
BspPI	GGATC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	689
BssMI	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
Bst4CI	ACNGT	2 cut(s)	361, 380
Bst6I	CTCTTC	3 cut(s)	99, 234, 540
BstDEI	CTNAG	2 cut(s)	444, 732
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	2 cut(s)	669, 965
BstHHI	GCGC	1 cut(s)	965
BstKTI	GATC	7 cut(s)	132, 322, 328, 573, 713, 877, 1040
BstMAI	GTCTC	2 cut(s)	655, 950
BstMBI	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
BstSCI	CCNGG	2 cut(s)	47, 616
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	2 cut(s)	669, 965
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	1037
BstYI	RGATCY	1 cut(s)	1037
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	974
BtsIMutI	CAGTG	1 cut(s)	974
CfoI	GCGC	1 cut(s)	965
Cfr13I	GGNCC	2 cut(s)	485, 498
CseI	GACGC	2 cut(s)	675, 954
Csp6I	GTAC	2 cut(s)	451, 843
CviAII	CATG	5 cut(s)	138, 337, 467, 568, 1047
CviQI	GTAC	2 cut(s)	451, 843
DdeI	CTNAG	2 cut(s)	444, 732
DpnI	GATC	7 cut(s)	131, 321, 327, 572, 712, 876, 1039
DpnII	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	99, 234, 540
EarI	CTCTTC	3 cut(s)	99, 234, 540
Eco24I	GRGCYC	1 cut(s)	625
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	485, 498
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	806
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	2 cut(s)	413, 895
EcoT38I	GRGCYC	1 cut(s)	625
FaeI	CATG	5 cut(s)	141, 340, 470, 571, 1050
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	5 cut(s)	137, 336, 466, 567, 1046
FbaI	TGATCA	1 cut(s)	129
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	625
FspBI	CTAG	3 cut(s)	342, 371, 960
GlaI	GCGC	1 cut(s)	964
GsuI	CTGGAG	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	48, 618
HgaI	GACGC	2 cut(s)	675, 954
HhaI	GCGC	1 cut(s)	965
Hin1II	CATG	5 cut(s)	141, 340, 470, 571, 1050
Hin6I	GCGC	1 cut(s)	963
HinP1I	GCGC	1 cut(s)	963
HinfI	GANTC	4 cut(s)	9, 146, 244, 821
HpaII	CCGG	2 cut(s)	48, 618
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	4 cut(s)	259, 665, 777, 869
Hpy188III	TCNNGA	5 cut(s)	98, 323, 342, 385, 1041
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	5 cut(s)	391, 578, 669, 851, 887
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	361, 380
HpyCH4IV	ACGT	2 cut(s)	849, 1012
HpyCH4V	TGCA	4 cut(s)	411, 893, 979, 1009
HpyF3I	CTNAG	2 cut(s)	444, 732
HpySE526I	ACGT	2 cut(s)	849, 1012
Hsp92II	CATG	5 cut(s)	141, 340, 470, 571, 1050
HspAI	GCGC	1 cut(s)	963
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	620, 741, 1043
LpnPI	CCDG	9 cut(s)	61, 336, 444, 501, 506, 561, 631, 670, 1026
LweI	GCATC	2 cut(s)	398, 880
MaeI	CTAG	3 cut(s)	342, 371, 960
MaeII	ACGT	2 cut(s)	849, 1012
MaeIII	GTNAC	2 cut(s)	70, 822
MalI	GATC	7 cut(s)	131, 321, 327, 572, 712, 876, 1039
MboI	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
MfeI	CAATTG	1 cut(s)	1031
MflI	RGATCY	1 cut(s)	1037
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	7 cut(s)	133, 513, 590, 641, 838, 944, 1031
MluI	ACGCGT	1 cut(s)	667
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	6 cut(s)	357, 571, 572, 760, 867, 985
Mph1103I	ATGCAT	2 cut(s)	413, 895
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	177, 783
MspI	CCGG	2 cut(s)	48, 618
MspR9I	CCNGG	2 cut(s)	49, 618
MunI	CAATTG	1 cut(s)	1031
Mva1269I	GAATGC	2 cut(s)	893, 930
MvnI	CGCG	2 cut(s)	669, 965
NciI	CCSGG	2 cut(s)	49, 618
NdeII	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
NlaIII	CATG	5 cut(s)	141, 340, 470, 571, 1050
NlaIV	GGNNCC	2 cut(s)	499, 622
NmuCI	GTSAC	1 cut(s)	822
NsiI	ATGCAT	2 cut(s)	413, 895
PaeR7I	CTCGAG	1 cut(s)	806
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	2 cut(s)	893, 930
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	9, 146, 244
PflFI	GACNNNGTC	1 cut(s)	921
PfoI	TCCNGGA	1 cut(s)	616
PleI	GAGTC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	829
PsiI	TTATAA	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	1012
PspN4I	GGNNCC	2 cut(s)	499, 622
PspPI	GGNCC	2 cut(s)	485, 498
PspXI	VCTCGAGB	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	1037
PsyI	GACNNNGTC	1 cut(s)	921
RsaI	GTAC	2 cut(s)	452, 844
RsaNI	GTAC	2 cut(s)	451, 843
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	177, 783
Sau3AI	GATC	7 cut(s)	129, 319, 325, 570, 710, 874, 1037
Sau96I	GGNCC	2 cut(s)	485, 498
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	2 cut(s)	49, 618
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	2 cut(s)	398, 880
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	806
SinI	GGWCC	2 cut(s)	485, 498
SlaI	CTCGAG	1 cut(s)	806
SmlI	CTYRAG	2 cut(s)	747, 806
SmoI	CTYRAG	2 cut(s)	747, 806
Sse9I	AATT	7 cut(s)	133, 513, 590, 641, 838, 944, 1031
SspMI	CTAG	3 cut(s)	342, 371, 960
StyD4I	CCNGG	2 cut(s)	47, 616
TaaI	ACNGT	2 cut(s)	361, 380
TaiI	ACGT	2 cut(s)	852, 1015
TaqI	TCGA	4 cut(s)	328, 573, 709, 807
TasI	AATT	7 cut(s)	133, 513, 590, 641, 838, 944, 1031
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	3 cut(s)	9, 146, 244
Tru1I	TTAA	2 cut(s)	177, 783
Tru9I	TTAA	2 cut(s)	177, 783
TscAI	CASTG	1 cut(s)	981
TseFI	GTSAC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	4 cut(s)	126, 325, 690, 734
TspGWI	ACGGA	2 cut(s)	224, 728
TspRI	CASTG	1 cut(s)	981
Tth111I	GACNNNGTC	1 cut(s)	921
VpaK11BI	GGWCC	2 cut(s)	485, 498
XapI	RAATTY	3 cut(s)	513, 641, 944
XbaI	TCTAGA	1 cut(s)	341
XhoI	CTCGAG	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	3 cut(s)	342, 371, 960
Zsp2I	ATGCAT	2 cut(s)	413, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.