Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Forward (+)

5267990 .. 5270147

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05510.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAATATGGCGATATCGGTGGCCGTCGCCAACTCTTCCCTTTTCACGTCGGTGGCGGAAAAGCCTCCGGTGGGACCTCCAGGGTACATCTCCATTTCGAGAAAGAGGTTCATGAACTTGAAGAACCTAGACAGTTTCAATGGAGCTGAAAGAATGAACTCTCGGGTGGACTCAATGAGAGCTTCTTCTCCCACTCATATAAAGCCCTCATCTTTTCTGAAAGAAGACTGGATTCTTCATCACCCATCAGCCTTGGACATGTTTGAGCAGATTATCGATGCTTCGAAAGGGAAGCAAATAGTTATGTTTTTGGACTATGACGGCACACTGTCACCCATAGTTGAAGACCCAGATCGAGCTTTCATGTCTGATGCAATGAGAAAGACAGTGAAGAAAGTTGCTAGATGTTTTCCCACTGCCATAGTGAGTGGAAGATGCAGAGATAAGGTTTACAAATTTGTAAGGTTGGCAGAGCTGTACTATGCTGGTAGCCATGGAATGGATATTCAAGGTCCAGCGAAAGGTTCCAAATACATGAAGGTTTGTCAAGGTGTTCTTTGCCAGCCAGCAAGTGAGTTCCTTCCAATGATTGATGAGGTTTACAGACTGCTTGTTGACAAGACCAAATCGACTCCTGGAGCCAAAGTGGAGAACAACAAATTCTGCCTCTCTGTGCACTTTCGATGTGTTGATGAAAAGAAATGGAACGAACTGTTCATGCAAGTTAGATCAATTCTGAAGGAGTATTCAATGCTCAAACTTACCCAAGGAAGAAAGGTCTTAGAAATCCGTCCAACCATCAAATGGGACAAGGGGAAGGCTCTTGAATTTATACTGGAGTCACTTGGATATGCCAATTGCACGGATGTATTTCCTGTATATATTGGAGATGATCGAACGGATGAGGATGCATTCAAGGTATTAAGAGAAAGAGGACAAGGTTTTGGCATTTTGGTGTCAAAAGTTCCCAAGGAAACCAACGCAACTTATTCTTTACAAGAACCAGCTGAGGTGAGGGGACTTTCTTCAGAGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

347

Amino Acids

38.94

Weight (kDa)

8.98

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	499, 804
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	3 cut(s)	455, 659, 827
AcuI	CTGAAG	2 cut(s)	758, 1011
AfaI	GTAC	2 cut(s)	86, 479
AfiI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	7 cut(s)	121, 139, 344, 509, 750, 827, 916
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	2 cut(s)	79, 634
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	146, 182, 359, 475, 1007
AluI	AGCT	5 cut(s)	146, 182, 359, 475, 1007
Alw21I	GWGCWC	1 cut(s)	678
Alw44I	GTGCAC	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	674
ApoI	RAATTY	3 cut(s)	455, 659, 827
AspS9I	GGNCC	2 cut(s)	74, 512
AsuHPI	GGTGA	3 cut(s)	233, 324, 1024
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	2 cut(s)	74, 512
BaeGI	GKGCMC	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	231, 351
Bbv12I	GWGCWC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	1008
BccI	CCATC	2 cut(s)	253, 806
BceAI	ACGGC	2 cut(s)	8, 337
BciT130I	CCWGG	2 cut(s)	81, 636
BfaI	CTAG	2 cut(s)	128, 402
Bme1390I	CCNGG	2 cut(s)	81, 636
Bme18I	GGWCC	2 cut(s)	74, 512
BmeT110I	CYCGRG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	74, 512
BmiI	GGNNCC	3 cut(s)	75, 526, 640
BmrFI	CCNGG	2 cut(s)	81, 636
BmsI	GCATC	4 cut(s)	268, 361, 425, 898
BpiI	GAAGAC	2 cut(s)	231, 351
BpmI	CTGGAG	3 cut(s)	63, 657, 857
Bpu10I	CCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
Bse1I	ACTGG	2 cut(s)	233, 840
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	81, 636
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BseGI	GGATG	3 cut(s)	871, 907, 913
BseLI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	999
BseNI	ACTGG	2 cut(s)	233, 840
BseSI	GKGCMC	1 cut(s)	678
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	3 cut(s)	87, 821, 1032
BslI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
BsmFI	GGGAC	3 cut(s)	87, 821, 1032
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	352, 728, 892
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	1000
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	75, 526, 640
BspT104I	TTCGAA	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	233, 840
BssECI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BssMI	GATC	3 cut(s)	352, 728, 892
BssT1I	CCWWGG	4 cut(s)	252, 493, 766, 969
Bst2UI	CCWGG	2 cut(s)	81, 636
Bst4CI	ACNGT	4 cut(s)	134, 330, 388, 714
Bst6I	CTCTTC	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	563, 567
BstDEI	CTNAG	2 cut(s)	781, 1008
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	871, 907, 913
BstKTI	GATC	3 cut(s)	355, 731, 895
BstMBI	GATC	3 cut(s)	352, 728, 892
BstNI	CCWGG	2 cut(s)	81, 636
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	79, 634
BstSLI	GKGCMC	1 cut(s)	678
BstV2I	GAAGAC	2 cut(s)	231, 351
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	493
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	871, 907, 913
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	326, 393, 414
Cac8I	GCNNGC	2 cut(s)	563, 567
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	74, 512
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	85, 478
CviAII	CATG	6 cut(s)	112, 259, 364, 494, 535, 718
CviQI	GTAC	2 cut(s)	85, 478
DdeI	CTNAG	2 cut(s)	781, 1008
DpnI	GATC	3 cut(s)	354, 730, 894
DpnII	GATC	3 cut(s)	352, 728, 892
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	4 cut(s)	252, 493, 766, 969
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	74, 512
Eco57I	CTGAAG	2 cut(s)	758, 1011
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	79, 634
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	4 cut(s)	252, 493, 766, 969
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	4 cut(s)	252, 493, 766, 969
FaeI	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	3 cut(s)	87, 821, 1032
FatI	CATG	6 cut(s)	111, 258, 363, 493, 534, 717
FokI	GGATG	3 cut(s)	878, 914, 920
FspBI	CTAG	2 cut(s)	128, 402
GsuI	CTGGAG	3 cut(s)	63, 657, 857
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	4 cut(s)	170, 232, 631, 839
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	3 cut(s)	233, 324, 1024
Hpy166II	GTNNAC	5 cut(s)	169, 451, 601, 616, 676
Hpy188I	TCNGA	4 cut(s)	219, 370, 738, 1030
Hpy188III	TCNNGA	3 cut(s)	99, 112, 824
Hpy8I	GTNNAC	5 cut(s)	169, 451, 601, 616, 676
Hpy99I	CGWCG	2 cut(s)	29, 52
HpyAV	CCTTC	4 cut(s)	532, 590, 733, 811
HpyCH4III	ACNGT	4 cut(s)	134, 330, 388, 714
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	374, 438, 676, 721, 861, 911
HpyF3I	CTNAG	2 cut(s)	781, 1008
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
Kzo9I	GATC	3 cut(s)	352, 728, 892
LmnI	GCTCC	2 cut(s)	143, 638
LweI	GCATC	4 cut(s)	268, 361, 425, 898
MaeI	CTAG	2 cut(s)	128, 402
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	330, 840
MalI	GATC	3 cut(s)	354, 730, 894
MboI	GATC	3 cut(s)	352, 728, 892
MfeI	CAATTG	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	5 cut(s)	455, 659, 732, 827, 856
MlyI	GAGTC	3 cut(s)	164, 625, 848
MmeI	TCCRAC	1 cut(s)	818
Mph1103I	ATGCAT	1 cut(s)	913
MseI	TTAA	1 cut(s)	923
MslI	CAYNNNNRTG	2 cut(s)	50, 953
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	81, 636
MunI	CAATTG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	81, 636
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	352, 728, 892
NlaIII	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
NlaIV	GGNNCC	3 cut(s)	75, 526, 640
NmuCI	GTSAC	2 cut(s)	330, 840
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	258
PctI	GAATGC	1 cut(s)	911
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	2 cut(s)	499, 804
PfoI	TCCNGGA	1 cut(s)	634
PleI	GAGTC	3 cut(s)	164, 625, 847
PpsI	GAGTC	3 cut(s)	164, 625, 847
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	79, 634
PspGI	CCWGG	2 cut(s)	79, 634
PspN4I	GGNNCC	3 cut(s)	75, 526, 640
PspPI	GGNCC	2 cut(s)	74, 512
PspPPI	RGGWCCY	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	86, 479
RsaNI	GTAC	2 cut(s)	85, 478
RseI	CAYNNNNRTG	2 cut(s)	50, 953
SaqAI	TTAA	1 cut(s)	923
Sau3AI	GATC	3 cut(s)	352, 728, 892
Sau96I	GGNCC	2 cut(s)	74, 512
SchI	GAGTC	3 cut(s)	164, 625, 848
ScrFI	CCNGG	2 cut(s)	81, 636
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	4 cut(s)	268, 361, 425, 898
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	2 cut(s)	74, 512
SmiMI	CAYNNNNRTG	2 cut(s)	50, 953
Sse9I	AATT	5 cut(s)	455, 659, 732, 827, 856
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	128, 402
StyD4I	CCNGG	2 cut(s)	79, 634
StyI	CCWWGG	4 cut(s)	252, 493, 766, 969
TaaI	ACNGT	4 cut(s)	134, 330, 388, 714
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	7 cut(s)	98, 276, 284, 355, 629, 682, 895
TasI	AATT	5 cut(s)	455, 659, 732, 827, 856
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	923
Tru9I	TTAA	1 cut(s)	923
TscAI	CASTG	3 cut(s)	333, 393, 421
TseFI	GTSAC	2 cut(s)	330, 840
Tsp45I	GTSAC	2 cut(s)	330, 840
TspDTI	ATGAA	9 cut(s)	17, 100, 128, 170, 227, 352, 551, 706, 708
TspGWI	ACGGA	3 cut(s)	779, 878, 914
TspRI	CASTG	3 cut(s)	333, 393, 421
Van91I	CCANNNNNTGG	2 cut(s)	499, 804
VneI	GTGCAC	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	74, 512
XapI	RAATTY	3 cut(s)	455, 659, 827
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XspI	CTAG	2 cut(s)	128, 402
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.