Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Forward (+)

29373803 .. 29376639

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGACTAACCAGAATGTCATCGTTTCCGACAGGAAACCCATCTTGGGTTTGAAAACCATCACTGTCTCTGTCTCTAACTCTCCTCTGTTCTCTAATTCCTTTCCCACTTACTTTAACTTCCCTCGTCGAAAGCTCTTGAAACTTCTTGAAGCAGCCGACAAAAACAACTTAGTTGTTGCTCCAAAGATTACGTCTATGATCGATTCCATGCGTGATTCTTCCCCTACACGTCTCAGATCCTCTTCCTATGACTCTGTTTCAGATAACGACGACAAAACATCTTGGATCGTTCGTTTTCCTTCGGCTTTAAATATGTTTGATGAGATTGTGAATGCTGCGAAAGGGAAACAGATTGTCATGTTTCTTGATTACGACGGAACTCTTTCTCCCATAGTTGAAGATCCCGACAAAGCTTTCATAACCCATGAGATGAGAGAAGTCGTAAAAGACGTGGCTTCGAATTTCCCGACTGCTATTGTCACCGGGAGATCCATTGAGAAGGTTCGTAGTTTTGTCCAAGTAAACGAGATTTACTACGCCGGAAGCCACGGCATGGACATTGAAGGTCCGACCAACGAAAATAGTAACGGCCAGAGTAATGAAAGAGTGCTATTCCAACCTGCTCGTGAATTTTTACCGATGATCGAGAAGGTGGTTAATATTTTAGAGGAAAAAACAAAATGGATCCCTGGGGCTATGGTGGAGAACAACAAGTTTTGTCTGTCCGTACATTTTCGACGTGTTGATGAGAAGAGATGGCCTGCATTAGCTGAAGTAGTAAAATCAGTTCTTATTGATTATCCAAAGCTGAAACTAACCCAAGGTAGAAAGGTACTTGAAATCCGCCCCACAATCAAATGGGACAAGGGCCAGGCACTCAATTTTTTACTAAAATCATTAGGATATGAAAATTCGGATGATGTTGTGCCGGTGTATATCGGGGATGACCGTACTGACGAAGATGCGTTTAAGGTTTTACGTGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGTACCAAAGGACACCAATGCCTCTTATTCTCTTCAAGACCCTTCTCAGGTTAACAAGTTTCTGGAACGTTTAGTAGAATGGAAGAGGAAGACAGTGGGAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

374

Amino Acids

42.45

Weight (kDa)

7.7

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	121 - 354	1.3e-78	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	1 cut(s)	844
AclI	AACGTT	1 cut(s)	1084
AclWI	GGATC	6 cut(s)	231, 293, 395, 483, 679, 692
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	3 cut(s)	460, 629, 910
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	4 cut(s)	729, 834, 952, 1020
AfiI	CCNNNNNNNGG	3 cut(s)	44, 553, 1063
AflIII	ACRYGT	2 cut(s)	227, 739
AgsI	TTSAA	7 cut(s)	52, 139, 149, 398, 563, 839, 1052
AjiI	CACGTC	3 cut(s)	230, 451, 740
AjnI	CCWGG	2 cut(s)	688, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AloI	GAACNNNNNNTCC	2 cut(s)	370, 402
AluBI	AGCT	4 cut(s)	133, 413, 770, 808
AluI	AGCT	4 cut(s)	133, 413, 770, 808
Alw26I	GTCTC	4 cut(s)	70, 76, 236, 1015
AlwI	GGATC	6 cut(s)	231, 293, 395, 483, 679, 692
AoxI	GGCC	3 cut(s)	589, 758, 868
ApeKI	GCWGC	2 cut(s)	152, 335
ApoI	RAATTY	3 cut(s)	460, 629, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	566, 868
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	1112
BbvI	GCAGC	2 cut(s)	164, 322
BccI	CCATC	3 cut(s)	47, 65, 750
BceAI	ACGGC	2 cut(s)	565, 604
BciT130I	CCWGG	2 cut(s)	690, 872
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	4 cut(s)	70, 76, 236, 1015
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	153, 336
BlsI	GCNGC	2 cut(s)	154, 337
Bme1390I	CCNGG	3 cut(s)	484, 690, 872
Bme18I	GGWCC	1 cut(s)	566
BmgBI	CACGTC	3 cut(s)	230, 451, 740
BmgT120I	GGNCC	2 cut(s)	566, 868
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	3 cut(s)	484, 690, 872
BmsI	GCATC	1 cut(s)	952
BpiI	GAAGAC	1 cut(s)	1112
Bpu14I	TTCGAA	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	484
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	980
BsaJI	CCNNGG	4 cut(s)	547, 688, 689, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 553, 1063
Bse118I	RCCGGY	1 cut(s)	928
BseBI	CCWGG	2 cut(s)	690, 872
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	547, 688, 689, 820
BseGI	GGATG	2 cut(s)	922, 949
BseLI	CCNNNNNNNGG	3 cut(s)	44, 553, 1063
BseMII	CTCAG	2 cut(s)	247, 1076
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	164, 322
BshFI	GGCC	3 cut(s)	591, 760, 870
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	483, 540, 929
BslFI	GGGAC	2 cut(s)	875, 1002
BslI	CCNNNNNNNGG	3 cut(s)	44, 553, 1063
BsmAI	GTCTC	4 cut(s)	70, 76, 236, 1015
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	875, 1002
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	591, 760, 870
Bsp119I	TTCGAA	1 cut(s)	458
Bsp143I	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
BspACI	CCGC	1 cut(s)	844
BspANI	GGCC	3 cut(s)	591, 760, 870
BspCNI	CTCAG	2 cut(s)	246, 1075
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	686
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	6 cut(s)	231, 293, 395, 483, 679, 692
BspT104I	TTCGAA	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	928
BssAI	RCCGGY	1 cut(s)	928
BssECI	CCNNGG	4 cut(s)	547, 688, 689, 820
BssMI	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	820
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	690, 872
Bst4CI	ACNGT	3 cut(s)	64, 950, 1111
Bst6I	CTCTTC	5 cut(s)	247, 746, 1053, 1094, 1113
BstBAI	YACGTR	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	3 cut(s)	169, 233, 1062
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	922, 949
BstKTI	GATC	7 cut(s)	201, 239, 288, 403, 491, 645, 687
BstMAI	GTCTC	4 cut(s)	70, 76, 236, 1015
BstMBI	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
BstNI	CCWGG	2 cut(s)	690, 872
BstSCI	CCNGG	3 cut(s)	482, 688, 870
BstV1I	GCAGC	2 cut(s)	164, 322
BstV2I	GAAGAC	1 cut(s)	1112
BstX2I	RGATCY	4 cut(s)	236, 400, 488, 684
BstYI	RGATCY	4 cut(s)	236, 400, 488, 684
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	3 cut(s)	591, 760, 870
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	547
BtrI	CACGTC	3 cut(s)	230, 451, 740
BtsCI	GGATG	2 cut(s)	922, 949
BtsIMutI	CAGTG	2 cut(s)	60, 1116
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	762
Cfr10I	RCCGGY	1 cut(s)	928
Cfr13I	GGNCC	2 cut(s)	566, 868
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	4 cut(s)	728, 833, 951, 1019
CviAII	CATG	4 cut(s)	208, 358, 425, 553
CviQI	GTAC	4 cut(s)	728, 833, 951, 1019
DdeI	CTNAG	3 cut(s)	169, 233, 1062
DpnI	GATC	7 cut(s)	200, 238, 287, 402, 490, 644, 686
DpnII	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	5 cut(s)	247, 746, 1053, 1094, 1113
EarI	CTCTTC	5 cut(s)	247, 746, 1053, 1094, 1113
EciI	GGCGGA	1 cut(s)	833
Eco130I	CCWWGG	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	792
EcoRII	CCWGG	2 cut(s)	688, 870
EcoT14I	CCWWGG	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	820
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	4 cut(s)	211, 361, 428, 556
FaqI	GGGAC	2 cut(s)	875, 1002
FatI	CATG	4 cut(s)	207, 357, 424, 552
Fnu4HI	GCNGC	2 cut(s)	153, 336
FokI	GGATG	2 cut(s)	929, 956
Fsp4HI	GCNGC	2 cut(s)	153, 336
GluI	GCNGC	2 cut(s)	153, 336
HaeIII	GGCC	3 cut(s)	591, 760, 870
HapII	CCGG	3 cut(s)	483, 540, 929
Hin1II	CATG	4 cut(s)	211, 361, 428, 556
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	4 cut(s)	203, 215, 251, 1003
HpaI	GTTAAC	1 cut(s)	1069
HpaII	CCGG	3 cut(s)	483, 540, 929
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	523, 1069
Hpy188I	TCNGA	5 cut(s)	28, 236, 262, 570, 916
Hpy188III	TCNNGA	9 cut(s)	136, 146, 365, 404, 466, 626, 646, 1052, 1079
Hpy8I	GTNNAC	2 cut(s)	523, 1069
Hpy99I	CGWCG	4 cut(s)	129, 272, 377, 741
HpyAV	CCTTC	5 cut(s)	309, 493, 557, 643, 1068
HpyCH4III	ACNGT	3 cut(s)	64, 950, 1111
HpyCH4IV	ACGT	6 cut(s)	191, 229, 450, 739, 979, 1084
HpyCH4V	TGCA	1 cut(s)	764
HpyF3I	CTNAG	3 cut(s)	169, 233, 1062
HpySE526I	ACGT	6 cut(s)	191, 229, 450, 739, 979, 1084
Hsp92II	CATG	4 cut(s)	211, 361, 428, 556
KspAI	GTTAAC	1 cut(s)	1069
Kzo9I	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	2 cut(s)	164, 322
LweI	GCATC	1 cut(s)	952
MaeII	ACGT	6 cut(s)	191, 229, 450, 739, 979, 1084
MaeIII	GTNAC	2 cut(s)	478, 584
MalI	GATC	7 cut(s)	200, 238, 287, 402, 490, 644, 686
MboI	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
MboII	GAAGA	8 cut(s)	210, 234, 410, 763, 971, 1040, 1111, 1117
MflI	RGATCY	4 cut(s)	236, 400, 488, 684
MluCI	AATT	5 cut(s)	94, 460, 629, 880, 910
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	3 cut(s)	51, 593, 640
MnlI	CCTC	6 cut(s)	93, 132, 250, 661, 1048, 1095
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	5 cut(s)	114, 308, 657, 969, 1068
MspI	CCGG	3 cut(s)	483, 540, 929
MspR9I	CCNGG	3 cut(s)	484, 690, 872
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	690, 872
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
NlaIII	CATG	4 cut(s)	211, 361, 428, 556
NlaIV	GGNNCC	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	458
PasI	CCCWGGG	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	2 cut(s)	447, 464
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	203, 215, 1003
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	154, 337
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	980
Psp1406I	AACGTT	1 cut(s)	1084
Psp6I	CCWGG	2 cut(s)	688, 870
PspGI	CCWGG	2 cut(s)	688, 870
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	2 cut(s)	566, 868
PsrI	GAACNNNNNNTAC	2 cut(s)	771, 803
PsuI	RGATCY	4 cut(s)	236, 400, 488, 684
RsaI	GTAC	4 cut(s)	729, 834, 952, 1020
RsaNI	GTAC	4 cut(s)	728, 833, 951, 1019
SaqAI	TTAA	5 cut(s)	114, 308, 657, 969, 1068
SatI	GCNGC	2 cut(s)	153, 336
Sau3AI	GATC	7 cut(s)	198, 236, 285, 400, 488, 642, 684
Sau96I	GGNCC	2 cut(s)	566, 868
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	484, 690, 872
SfaNI	GCATC	1 cut(s)	952
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	1 cut(s)	566
Sse9I	AATT	5 cut(s)	94, 460, 629, 880, 910
SsiI	CCGC	1 cut(s)	844
SspI	AATATT	1 cut(s)	661
StyD4I	CCNGG	3 cut(s)	482, 688, 870
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	3 cut(s)	64, 950, 1111
TaiI	ACGT	6 cut(s)	194, 232, 453, 742, 982, 1087
TaqI	TCGA	5 cut(s)	127, 201, 458, 645, 736
TasI	AATT	5 cut(s)	94, 460, 629, 880, 910
TfiI	GAWTC	3 cut(s)	203, 215, 1003
Tru1I	TTAA	5 cut(s)	114, 308, 657, 969, 1068
Tru9I	TTAA	5 cut(s)	114, 308, 657, 969, 1068
TscAI	CASTG	2 cut(s)	67, 1116
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	152, 335
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	406, 615, 921
TspGWI	ACGGA	2 cut(s)	390, 715
TspRI	CASTG	2 cut(s)	67, 1116
Van91I	CCANNNNNTGG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	3 cut(s)	460, 629, 910
XmnI	GAANNNNTTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.