Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Forward (+)

3157694 .. 3161708

Gene Structure 4015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGTGCGTTTTGTCGTGGAAAAACCACAGATAATGTCAGCTAGTCAAAACATTGTCGTATCAGAGACTACAATGTCAAGTATCATCCCCAACAACAACAACAACAACAACAACTCTTCTTCACAGAAACTCCCTCCTTGTTTAATCTCAATTTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAAAGAATCAACGCTTGGGTAGATTCAATGCGTGCTTCTTCTCCTACTCATCTCAAATCTCTTCCTTCTTCTATCTCCACACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAAATTCGAACAGATAATGGAAGCTTCGAGAGGGAAACAAATCGTAATGTTTCTTGATTATGACGGTACTCTCTCTCCCATTGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAGAAGAACAGTGAAAAAACTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCATAGACAAGGTGTATAACTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCATGGACATTAAAGGTCCAGCAAAAGGCTTCTCCAGACACAAGAGGGTTAAACAGTCTCTTCTGTACCAACCAGCTAATGACTATCTTCCCATGATCGATGAAGTTTATAGACAACTCTTGGAAAAAACAAAATCGACTCCAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCACTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTACAGGTTCGGTCGGTATTAAAGAAATTCCCTACGCTGCAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAATGATTGAATGGGATAAAGGAAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGAACACTAACAATGTTTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTAAGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATACTGATGCTTCGTATTCTTTGCAAGATCCATCCGAGGTGATGGATTTCTTACGACGATTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

380

Amino Acids

43.3

Weight (kDa)

9.43

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	116 - 350	9e-68	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	571
AclWI	GGATC	3 cut(s)	311, 413, 1070
AcsI	RAATTY	2 cut(s)	332, 818
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	397, 635
AfiI	CCNNNNNNNGG	3 cut(s)	571, 593, 846
AgsI	TTSAA	2 cut(s)	228, 878
AhdI	GACNNNNNGTC	1 cut(s)	843
AjnI	CCWGG	1 cut(s)	709
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	7 cut(s)	41, 166, 353, 431, 538, 547, 644
AluI	AGCT	7 cut(s)	41, 166, 353, 431, 538, 547, 644
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	4 cut(s)	59, 630, 996, 1036
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	3 cut(s)	311, 413, 1070
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	3 cut(s)	759, 829, 1129
ApoI	RAATTY	2 cut(s)	332, 818
Asp700I	GAANNNNTTC	2 cut(s)	789, 854
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	2 cut(s)	974, 1099
AsuII	TTCGAA	2 cut(s)	336, 858
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	746, 816
BccI	CCATC	2 cut(s)	1084, 1087
BciT130I	CCWGG	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	1042
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	4 cut(s)	59, 630, 996, 1036
BfaI	CTAG	2 cut(s)	42, 326
BfmI	CTRYAG	2 cut(s)	492, 794
BfuI	GTATCC	1 cut(s)	1042
BisI	GCNGC	3 cut(s)	760, 830, 1130
BlpI	GCTNAGC	1 cut(s)	543
BlsI	GCNGC	3 cut(s)	761, 831, 1131
Bme1390I	CCNGG	2 cut(s)	711, 950
Bme18I	GGWCC	1 cut(s)	584
BmeRI	GACNNNNNGTC	1 cut(s)	843
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	2 cut(s)	711, 950
BmsI	GCATC	4 cut(s)	497, 973, 984, 1045
BpmI	CTGGAG	2 cut(s)	586, 693
Bpu1102I	GCTNAGC	1 cut(s)	543
Bpu14I	TTCGAA	2 cut(s)	336, 858
BpuEI	CTTGAG	2 cut(s)	155, 920
BpuMI	CCSGG	1 cut(s)	950
Bsa29I	ATCGAT	1 cut(s)	666
BsaJI	CCNNGG	4 cut(s)	565, 841, 1044, 1083
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 388, 418, 705, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	571, 593, 846
Bse1I	ACTGG	3 cut(s)	474, 505, 792
BseBI	CCWGG	1 cut(s)	711
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	565, 841, 1044, 1083
BseGI	GGATG	3 cut(s)	84, 313, 1079
BseLI	CCNNNNNNNGG	3 cut(s)	571, 593, 846
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	3 cut(s)	474, 505, 792
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	2 cut(s)	746, 816
Bsh1285I	CGRYCG	2 cut(s)	806, 970
BshVI	ATCGAT	1 cut(s)	666
BsiEI	CGRYCG	2 cut(s)	806, 970
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	950
BslI	CCNNNNNNNGG	3 cut(s)	571, 593, 846
BsmAI	GTCTC	4 cut(s)	59, 630, 996, 1036
BsmI	GAATGC	1 cut(s)	1023
Bsp119I	TTCGAA	2 cut(s)	336, 858
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	5 cut(s)	303, 418, 663, 967, 1075
Bsp1720I	GCTNAGC	1 cut(s)	543
Bsp19I	CCATGG	1 cut(s)	565
BspCNI	CTCAG	1 cut(s)	535
BspDI	ATCGAT	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	715
BspPI	GGATC	3 cut(s)	311, 413, 1070
BspT104I	TTCGAA	2 cut(s)	336, 858
BsrI	ACTGG	3 cut(s)	474, 505, 792
BssECI	CCNNGG	4 cut(s)	565, 841, 1044, 1083
BssMI	GATC	5 cut(s)	303, 418, 663, 967, 1075
BssT1I	CCWWGG	3 cut(s)	565, 841, 1044
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	395, 460, 624
Bst6I	CTCTTC	3 cut(s)	121, 267, 633
BstBI	TTCGAA	2 cut(s)	336, 858
BstC8I	GCNNGC	2 cut(s)	234, 540
BstDEI	CTNAG	2 cut(s)	474, 543
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	3 cut(s)	84, 313, 1079
BstKTI	GATC	5 cut(s)	306, 421, 666, 970, 1078
BstMAI	GTCTC	4 cut(s)	59, 630, 996, 1036
BstMBI	GATC	5 cut(s)	303, 418, 663, 967, 1075
BstMCI	CGRYCG	2 cut(s)	806, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	2 cut(s)	709, 948
BstSFI	CTRYAG	2 cut(s)	492, 794
BstSLI	GKGCMC	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	746, 816
BstX2I	RGATCY	1 cut(s)	1075
BstYI	RGATCY	1 cut(s)	1075
Bsu15I	ATCGAT	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	1042
BsuTUI	ATCGAT	1 cut(s)	666
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	84, 313, 1079
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	465, 486
Cac8I	GCNNGC	2 cut(s)	234, 540
Cfr13I	GGNCC	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	396, 634
CspCI	CAANNNNNGTGG	4 cut(s)	178, 213, 719, 754
CviAII	CATG	6 cut(s)	300, 307, 436, 566, 571, 661
CviQI	GTAC	2 cut(s)	396, 634
DdeI	CTNAG	2 cut(s)	474, 543
DpnI	GATC	5 cut(s)	305, 420, 665, 969, 1077
DpnII	GATC	5 cut(s)	303, 418, 663, 967, 1075
DrdI	GACNNNNNNGTC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	843
DseDI	GACNNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	3 cut(s)	121, 267, 633
Eam1105I	GACNNNNNGTC	1 cut(s)	843
EarI	CTCTTC	3 cut(s)	121, 267, 633
Eco130I	CCWWGG	3 cut(s)	565, 841, 1044
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	3 cut(s)	565, 841, 1044
EcoT22I	ATGCAT	2 cut(s)	512, 988
ErhI	CCWWGG	3 cut(s)	565, 841, 1044
FaeI	CATG	6 cut(s)	303, 310, 439, 569, 574, 664
FatI	CATG	6 cut(s)	299, 306, 435, 565, 570, 660
Fnu4HI	GCNGC	3 cut(s)	760, 830, 1130
FokI	GGATG	3 cut(s)	71, 300, 1066
Fsp4HI	GCNGC	3 cut(s)	760, 830, 1130
FspBI	CTAG	2 cut(s)	42, 326
GluI	GCNGC	3 cut(s)	760, 830, 1130
GsuI	CTGGAG	2 cut(s)	586, 693
HapII	CCGG	1 cut(s)	950
HgaI	GACGC	1 cut(s)	751
Hin1II	CATG	6 cut(s)	303, 310, 439, 569, 574, 664
HindIII	AAGCTT	4 cut(s)	164, 351, 429, 536
HinfI	GANTC	4 cut(s)	207, 224, 706, 914
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	2 cut(s)	974, 1099
Hpy166II	GTNNAC	2 cut(s)	200, 751
Hpy188I	TCNGA	3 cut(s)	64, 849, 1084
Hpy188III	TCNNGA	6 cut(s)	172, 357, 383, 422, 603, 899
Hpy8I	GTNNAC	2 cut(s)	200, 751
Hpy99I	CGWCG	2 cut(s)	767, 1107
HpyAV	CCTTC	4 cut(s)	276, 327, 844, 1007
HpyCH4III	ACNGT	3 cut(s)	395, 460, 624
HpyCH4V	TGCA	7 cut(s)	310, 510, 751, 832, 986, 1072, 1129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	2 cut(s)	474, 543
Hsp92II	CATG	6 cut(s)	303, 310, 439, 569, 574, 664
Kzo9I	GATC	5 cut(s)	303, 418, 663, 967, 1075
LmnI	GCTCC	2 cut(s)	713, 780
Lsp1109I	GCAGC	2 cut(s)	746, 816
LweI	GCATC	4 cut(s)	497, 973, 984, 1045
MaeI	CTAG	2 cut(s)	42, 326
MaeIII	GTNAC	2 cut(s)	496, 962
MalI	GATC	5 cut(s)	305, 420, 665, 969, 1077
MboI	GATC	5 cut(s)	303, 418, 663, 967, 1075
MflI	RGATCY	1 cut(s)	1075
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	3 cut(s)	150, 332, 818
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	827
MnlI	CCTC	5 cut(s)	144, 353, 606, 1001, 1078
Mph1103I	ATGCAT	2 cut(s)	512, 988
MroXI	GAANNNNTTC	2 cut(s)	789, 854
MseI	TTAA	5 cut(s)	143, 579, 618, 812, 990
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	2 cut(s)	711, 950
Mva1269I	GAATGC	1 cut(s)	1023
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	950
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	5 cut(s)	303, 418, 663, 967, 1075
NlaIII	CATG	6 cut(s)	303, 310, 439, 569, 574, 664
NlaIV	GGNNCC	1 cut(s)	715
NmuCI	GTSAC	1 cut(s)	962
NsiI	ATGCAT	2 cut(s)	512, 988
NspV	TTCGAA	2 cut(s)	336, 858
PctI	GAATGC	1 cut(s)	1023
PdmI	GAANNNNTTC	2 cut(s)	789, 854
PfeI	GAWTC	3 cut(s)	207, 224, 914
PflMI	CCANNNNNTGG	1 cut(s)	571
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	3 cut(s)	761, 831, 1131
Ple19I	CGATCG	1 cut(s)	970
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	777, 809
PsuI	RGATCY	1 cut(s)	1075
PvuI	CGATCG	1 cut(s)	970
RsaI	GTAC	2 cut(s)	397, 635
RsaNI	GTAC	2 cut(s)	396, 634
SaqAI	TTAA	5 cut(s)	143, 579, 618, 812, 990
SatI	GCNGC	3 cut(s)	760, 830, 1130
Sau3AI	GATC	5 cut(s)	303, 418, 663, 967, 1075
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	711, 950
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	4 cut(s)	497, 973, 984, 1045
SfcI	CTRYAG	2 cut(s)	492, 794
SfuI	TTCGAA	2 cut(s)	336, 858
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	170, 899
SmoI	CTYRAG	2 cut(s)	170, 899
Sse9I	AATT	3 cut(s)	150, 332, 818
SspMI	CTAG	2 cut(s)	42, 326
StyD4I	CCNGG	2 cut(s)	709, 948
StyI	CCWWGG	3 cut(s)	565, 841, 1044
TaaI	ACNGT	3 cut(s)	395, 460, 624
TaqI	TCGA	8 cut(s)	180, 336, 356, 666, 704, 765, 858, 970
TaqII	GACCGA	1 cut(s)	792
TasI	AATT	3 cut(s)	150, 332, 818
TfiI	GAWTC	3 cut(s)	207, 224, 914
Tru1I	TTAA	5 cut(s)	143, 579, 618, 812, 990
Tru9I	TTAA	5 cut(s)	143, 579, 618, 812, 990
TscAI	CASTG	2 cut(s)	465, 493
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	3 cut(s)	759, 829, 1129
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	2 cut(s)	424, 684
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	2 cut(s)	465, 493
Van91I	CCANNNNNTGG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	332, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	876
XmnI	GAANNNNTTC	2 cut(s)	789, 854
XspI	CTAG	2 cut(s)	42, 326
Zsp2I	ATGCAT	2 cut(s)	512, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.