Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Reverse (-)

26154261 .. 26157089

Gene Structure 2829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACTAAGCAAAATGTGGTAGTGTCCGATGCTGACTCCCAAATCATGAACATGGCGATATCGGTTGCCGTGTCGAACTCTTCGATTTTCAGTGCGGCGGCGGACAAGCCTCCGATGGCGCCGGGTGGGTATATATCCATCTCGAGGAAGAGATTGATGAACTTGAAGAACCTTGACATTATTAATGGAGGTGAAAGACTCACCTCTTGGGTGGACTCGATGAAGGCTTCATCTCCCACCCATATTCAGTCTTCCCCTTGCTTGGTGAAAGGCCAGAGTTCTTGGATGCTTCAGCACCCATCAGCCTTAGACACGTTTGACAAAATCATAGAAGTTTCCCAAGGCAAGCAAATTGTCATGTTTCTGGACTATGATGGCACTCTTTCGCCCATAGTCGAAGACCCAGATCGAGCTTTTATGTCGGATTCAATGAGGAAGACCGTGAAACAACTTGCTAGGTGTTTTCCTACTGCAATAGTGAGTGGAAGATGCAGAGACAAGGTGTACAAATTTGTACGATTGGCAGAGTTGTACTATGCTGGTAGCCATGGTATGGACATTAAAGGTCCAGCAAAAGGTTCCAAATACAAGAAAGGTAGCCAAGGTGTTCTTTGCCAACCAGCAAGTGAGTTTCTTCCTATGATTGATGAAGTTTATAAGCTACTGGTTGAGAAGACCAAATCAACTCCTGGAGCAAAAGTTGAGAACAACAAGTTCTGTCTCTCTGTGCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCCTCGCAAGTTAGATCAGTTTTGAAGGAGTACCCACAGCTTAGACTCTCTCAAGGAAGAAAGGTTTTGGAAATTCGTCCTACCATCAAATGGGACAAAGGCAAGGCTCTTGAATTTTTGCTGGAGTCACTTGGATACGCCAATTGCAATGATGTTTTTCCTGTGTACATTGGAGATGACCGAACCGATGAAGATGCGTTTAAGGTATTGAGAGACAGAGGACAAGGTTTTGGCATTCTCGTCTCAAAAATTCCAAAGGAAACCAGCGCAACTTATTCTTTACAGGAACCGGCTGAGGTTATGGACTTTCTCCAGCGTTTGGTTGAGTGGAAAAGACAAGCAGTACGGAGCCAAGCCATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

377

Amino Acids

42.19

Weight (kDa)

9.11

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	121 - 353	7.6e-77	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	3 cut(s)	553, 858, 1087
AciI	CCGC	3 cut(s)	95, 98, 101
AcsI	RAATTY	4 cut(s)	509, 840, 881, 1017
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	6 cut(s)	506, 516, 533, 800, 935, 1113
AfiI	CCNNNNNNNGG	6 cut(s)	144, 262, 553, 575, 858, 1087
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	166, 429, 793, 881
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	3 cut(s)	413, 661, 808
AluI	AGCT	3 cut(s)	413, 661, 808
Alw26I	GTCTC	4 cut(s)	489, 725, 975, 1015
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	271, 768
ApoI	RAATTY	4 cut(s)	509, 840, 881, 1017
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	121, 1037
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	193, 203, 277
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	4 cut(s)	243, 405, 443, 680
BbvCI	CCTCAGC	1 cut(s)	1062
BccI	CCATC	5 cut(s)	109, 146, 307, 368, 860
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	896
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	4 cut(s)	489, 725, 975, 1015
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	896
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme1390I	CCNGG	2 cut(s)	123, 690
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	4 cut(s)	120, 580, 1056, 1118
BmrFI	CCNGG	2 cut(s)	123, 690
BmsI	GCATC	4 cut(s)	19, 276, 479, 952
BpiI	GAAGAC	4 cut(s)	243, 405, 443, 680
BpmI	CTGGAG	3 cut(s)	711, 911, 1064
Bpu10I	CCTNAGC	1 cut(s)	1062
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	340, 547, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	6 cut(s)	144, 262, 553, 575, 858, 1087
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	2 cut(s)	669, 771
Bse3DI	GCAATG	1 cut(s)	922
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	3 cut(s)	340, 547, 601
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	6 cut(s)	144, 262, 553, 575, 858, 1087
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	1 cut(s)	1053
BseNI	ACTGG	2 cut(s)	669, 771
BshFI	GGCC	2 cut(s)	273, 770
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	122, 1058
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	6 cut(s)	144, 262, 553, 575, 858, 1087
BsmAI	GTCTC	4 cut(s)	489, 725, 975, 1015
BsmBI	CGTCTC	1 cut(s)	1015
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	1002
BsnI	GGCC	2 cut(s)	273, 770
BsoBI	CYCGRG	1 cut(s)	142
Bsp1407I	TGTACA	2 cut(s)	504, 933
Bsp143I	GATC	2 cut(s)	406, 782
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	3 cut(s)	95, 98, 101
BspANI	GGCC	2 cut(s)	273, 770
BspCNI	CTCAG	1 cut(s)	1054
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	120, 580, 1056, 1118
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	922
BsrFI	RCCGGY	1 cut(s)	1057
BsrGI	TGTACA	2 cut(s)	504, 933
BsrI	ACTGG	2 cut(s)	669, 771
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	3 cut(s)	340, 547, 601
BssMI	GATC	2 cut(s)	406, 782
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	3 cut(s)	340, 547, 601
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	2 cut(s)	85, 143
BstACI	GRCGYC	1 cut(s)	119
BstAUI	TGTACA	2 cut(s)	504, 933
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	4 cut(s)	6, 307, 809, 1062
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	121, 1037
BstKTI	GATC	2 cut(s)	409, 785
BstMAI	GTCTC	4 cut(s)	489, 725, 975, 1015
BstMBI	GATC	2 cut(s)	406, 782
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	121, 688
BstV2I	GAAGAC	4 cut(s)	243, 405, 443, 680
BsuI	GTATCC	1 cut(s)	896
BsuRI	GGCC	2 cut(s)	273, 770
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	347
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	2 cut(s)	121, 1037
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	6 cut(s)	505, 515, 532, 799, 934, 1112
CviAII	CATG	5 cut(s)	46, 52, 358, 548, 1126
CviQI	GTAC	6 cut(s)	505, 515, 532, 799, 934, 1112
DdeI	CTNAG	4 cut(s)	6, 307, 809, 1062
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	408, 784
DpnII	GATC	2 cut(s)	406, 782
Eam1104I	CTCTTC	2 cut(s)	85, 143
EarI	CTCTTC	2 cut(s)	85, 143
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	3 cut(s)	340, 547, 601
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	688
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	3 cut(s)	340, 547, 601
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	3 cut(s)	340, 547, 601
Esp3I	CGTCTC	1 cut(s)	1015
FaeI	CATG	5 cut(s)	49, 55, 361, 551, 1129
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	5 cut(s)	45, 51, 357, 547, 1125
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	2 cut(s)	120, 1036
GluI	GCNGC	2 cut(s)	96, 99
GsuI	CTGGAG	3 cut(s)	711, 911, 1064
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	273, 770
HapII	CCGG	2 cut(s)	122, 1058
HhaI	GCGC	2 cut(s)	121, 1037
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	49, 55, 361, 551, 1129
Hin6I	GCGC	2 cut(s)	119, 1035
HinP1I	GCGC	2 cut(s)	119, 1035
HinfI	GANTC	6 cut(s)	35, 198, 215, 425, 813, 893
HpaII	CCGG	2 cut(s)	122, 1058
HphI	GGTGA	3 cut(s)	193, 203, 277
Hpy166II	GTNNAC	4 cut(s)	214, 505, 764, 934
Hpy188I	TCNGA	3 cut(s)	28, 114, 424
Hpy188III	TCNNGA	4 cut(s)	46, 142, 365, 878
Hpy8I	GTNNAC	4 cut(s)	214, 505, 764, 934
HpyAV	CCTTC	2 cut(s)	217, 787
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	4 cut(s)	473, 492, 730, 915
HpyF3I	CTNAG	4 cut(s)	6, 307, 809, 1062
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	49, 55, 361, 551, 1129
HspAI	GCGC	2 cut(s)	119, 1035
KasI	GGCGCC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	406, 782
LmnI	GCTCC	2 cut(s)	692, 1116
LweI	GCATC	4 cut(s)	19, 276, 479, 952
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	894
MalI	GATC	2 cut(s)	408, 784
MboI	GATC	2 cut(s)	406, 782
MfeI	CAATTG	1 cut(s)	910
MluCI	AATT	6 cut(s)	351, 509, 840, 881, 910, 1017
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	5 cut(s)	29, 192, 209, 807, 902
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	120, 138, 182, 214, 426, 781, 980, 1057
MseI	TTAA	3 cut(s)	183, 561, 969
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	2 cut(s)	122, 1058
MspR9I	CCNGG	2 cut(s)	123, 690
MunI	CAATTG	1 cut(s)	910
Mva1269I	GAATGC	1 cut(s)	1002
MvaI	CCWGG	1 cut(s)	690
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	406, 782
NlaIII	CATG	5 cut(s)	49, 55, 361, 551, 1129
NlaIV	GGNNCC	4 cut(s)	120, 580, 1056, 1118
NmuCI	GTSAC	1 cut(s)	894
PaeR7I	CTCGAG	1 cut(s)	142
PagI	TCATGA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	1 cut(s)	1002
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	3 cut(s)	553, 858, 1087
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	97, 100
PleI	GAGTC	5 cut(s)	29, 192, 209, 807, 901
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	5 cut(s)	29, 192, 209, 807, 901
PshBI	ATTAAT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	4 cut(s)	120, 580, 1056, 1118
PspPI	GGNCC	1 cut(s)	566
RsaI	GTAC	6 cut(s)	506, 516, 533, 800, 935, 1113
RsaNI	GTAC	6 cut(s)	505, 515, 532, 799, 934, 1112
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	183, 561, 969
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	2 cut(s)	406, 782
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	5 cut(s)	29, 192, 209, 807, 902
ScrFI	CCNGG	2 cut(s)	123, 690
SfaNI	GCATC	4 cut(s)	19, 276, 479, 952
SfoI	GGCGCC	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	142, 819
SmoI	CTYRAG	2 cut(s)	142, 819
Sse9I	AATT	6 cut(s)	351, 509, 840, 881, 910, 1017
SsiI	CCGC	3 cut(s)	95, 98, 101
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	121, 688
StyI	CCWWGG	3 cut(s)	340, 547, 601
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	6 cut(s)	74, 83, 143, 218, 396, 409
TaqII	GACCGA	1 cut(s)	963
TasI	AATT	6 cut(s)	351, 509, 840, 881, 910, 1017
TatI	WGTACW	3 cut(s)	504, 531, 933
TauI	GCSGC	2 cut(s)	98, 101
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	183, 561, 969
Tru9I	TTAA	3 cut(s)	183, 561, 969
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	894
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	7 cut(s)	62, 173, 219, 236, 663, 762, 972
TspGWI	ACGGA	1 cut(s)	1129
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	3 cut(s)	553, 858, 1087
VpaK11BI	GGWCC	1 cut(s)	566
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	4 cut(s)	509, 840, 881, 1017
XhoI	CTCGAG	1 cut(s)	142
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.