Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Reverse (-)

35122339 .. 35125179

Gene Structure 2841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1326700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAACATGGCGATATCGGTGGCTGTGGCCAACTCTTCCATTTTCACGGCGGTGGCCGAAAAGCCTCCAGTGGGACCTCCAGGGTACATCTCCATTTCTCGAAGGAGGTTCGTGAACTTGAAGAACCTTGACAGTTTCAATGGAGCTGAAAGAATTAACTCTTGGGTGGACTCAATGAGAGCTTCCTCTCCCACCCATATAAAGTCCTCATCTTTTCTGAAAGAAGATTGGATTCGTCAGCACCCATCGGCCTTGGACATGTTTGAGCAGATTATCGATGCTTCAAAAGGGAAGCAAATAGTCATGTTTTTGGACTACGACGGCACACTGTCACCCATAGTTGAAGACCCAGATCGAGCTTTCATGTCTGATGCAATGAGAAAGACAGTGAAGAAAGTTGCTAGATCTTTTCCCACAGCCATAGTGAGTGGAAGATGCAGAGATAAGGTCTACAAATTTGTAAGATTGGCAGAGCTGTACTATGCTGGTAGCCATGGCATGGACATTAAAGGTCCAGCAAAAGGCTCCAAATACATGAAAGGTAGTCAAGGTATTCTTTGCCAACCAGCAAGTGAGTTTCTTCCAATGATAGATGAGGTTTACAAATTGCTTGTTGACAAGACCAAATCAACTCCTGGAGCCCAAGTGGAGAACAACAAGTTCTGTCTCTCTGTGCACTTTCGATGTGTTGATGAAAAGAAATGGAACGAACTGTCGTTGCAAGTTAGGTCAGTTCTGAAGGAGTACCCAATGCTCAGACTTACCCAAGGAAGAAAGGTCTTAGAAATCCGTCCTACCATCAAATGGGACAAAGGGAAGGCTCTTGAATTTCTACTAGAGTCACTCGGATATGCCAAATGCACCGATGTATTTCCTGTATATATTGGAGATGATCGAACGGATGAGGATGCATTCAAGGTATTAAGAGAAAGAGGACAAGGTTTTGGCATTCTCGTCTCAAAAATTCCCAAGGAAACCAACGCCACTTATTCTTTACAAGAACCAGCTGAGGTTATGGACTTTCTTCAGAGATTGGTTGAGTGGAAACAAAAATCAGTACGATCCCATGCTATGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

360

Amino Acids

40.63

Weight (kDa)

9.27

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	103 - 335	5.4e-75	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	499, 804
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	1056
AcoI	YGGCCR	2 cut(s)	27, 54
AcsI	RAATTY	3 cut(s)	455, 827, 963
AcuI	CTGAAG	2 cut(s)	758, 1010
AfaI	GTAC	4 cut(s)	86, 479, 746, 1059
AfiI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	6 cut(s)	121, 139, 285, 344, 827, 916
AjnI	CCWGG	2 cut(s)	79, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	146, 182, 359, 475, 1007
AluI	AGCT	5 cut(s)	146, 182, 359, 475, 1007
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	2 cut(s)	671, 961
Alw44I	GTGCAC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	1056
AoxI	GGCC	3 cut(s)	27, 54, 249
ApaLI	GTGCAC	1 cut(s)	674
ApoI	RAATTY	3 cut(s)	455, 827, 963
AspS9I	GGNCC	2 cut(s)	74, 512
AsuHPI	GGTGA	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	74, 512
BaeGI	GKGCMC	1 cut(s)	678
BalI	TGGCCA	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	1008
BccI	CCATC	2 cut(s)	253, 806
BceAI	ACGGC	2 cut(s)	63, 337
BciT130I	CCWGG	2 cut(s)	81, 636
BcoDI	GTCTC	2 cut(s)	671, 961
BfaI	CTAG	2 cut(s)	402, 836
BglII	AGATCT	1 cut(s)	404
Bme1390I	CCNGG	2 cut(s)	81, 636
Bme18I	GGWCC	2 cut(s)	74, 512
BmgT120I	GGNCC	2 cut(s)	74, 512
BmiI	GGNNCC	3 cut(s)	75, 526, 640
BmrFI	CCNGG	2 cut(s)	81, 636
BmsI	GCATC	4 cut(s)	268, 361, 425, 898
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	3 cut(s)	51, 63, 657
Bpu10I	CCTNAGC	1 cut(s)	1008
Bsa29I	ATCGAT	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	81, 636
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BseGI	GGATG	2 cut(s)	907, 913
BseLI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	769, 999
BseNI	ACTGG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	678
BshFI	GGCC	3 cut(s)	29, 56, 251
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	678
BslFI	GGGAC	2 cut(s)	87, 821
BslI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
BsmAI	GTCTC	2 cut(s)	671, 961
BsmBI	CGTCTC	1 cut(s)	961
BsmFI	GGGAC	2 cut(s)	87, 821
BsmI	GAATGC	2 cut(s)	911, 948
BsnI	GGCC	3 cut(s)	29, 56, 251
Bsp1286I	GDGCHC	2 cut(s)	643, 678
Bsp143I	GATC	4 cut(s)	352, 404, 892, 1061
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	3 cut(s)	29, 56, 251
BspCNI	CTCAG	2 cut(s)	768, 1000
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	3 cut(s)	75, 526, 640
BspPI	GGATC	1 cut(s)	1056
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BssMI	GATC	4 cut(s)	352, 404, 892, 1061
BssT1I	CCWWGG	4 cut(s)	252, 493, 766, 969
Bst2UI	CCWGG	2 cut(s)	81, 636
Bst4CI	ACNGT	4 cut(s)	134, 330, 388, 714
Bst6I	CTCTTC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	755, 781, 1008
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	907, 913
BstKTI	GATC	4 cut(s)	355, 407, 895, 1064
BstMAI	GTCTC	2 cut(s)	671, 961
BstMBI	GATC	4 cut(s)	352, 404, 892, 1061
BstNI	CCWGG	2 cut(s)	81, 636
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	79, 634
BstSLI	GKGCMC	1 cut(s)	678
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	29, 56, 251
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	907, 913
BtsIMutI	CAGTG	3 cut(s)	75, 326, 393
Cfr13I	GGNCC	2 cut(s)	74, 512
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	85, 478, 745, 1058
CviAII	CATG	8 cut(s)	7, 259, 304, 364, 494, 499, 535, 1067
CviQI	GTAC	4 cut(s)	85, 478, 745, 1058
DdeI	CTNAG	3 cut(s)	755, 781, 1008
DpnI	GATC	4 cut(s)	354, 406, 894, 1063
DpnII	GATC	4 cut(s)	352, 404, 892, 1061
EaeI	YGGCCR	2 cut(s)	27, 54
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	4 cut(s)	252, 493, 766, 969
Eco24I	GRGCYC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	74, 512
Eco57I	CTGAAG	2 cut(s)	758, 1010
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	79, 634
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	4 cut(s)	252, 493, 766, 969
EcoT22I	ATGCAT	1 cut(s)	913
EcoT38I	GRGCYC	1 cut(s)	643
ErhI	CCWWGG	4 cut(s)	252, 493, 766, 969
Esp3I	CGTCTC	1 cut(s)	961
FaeI	CATG	8 cut(s)	10, 262, 307, 367, 497, 502, 538, 1070
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	2 cut(s)	87, 821
FatI	CATG	8 cut(s)	6, 258, 303, 363, 493, 498, 534, 1066
FblI	GTMKAC	1 cut(s)	450
FokI	GGATG	2 cut(s)	914, 920
FriOI	GRGCYC	1 cut(s)	643
FspBI	CTAG	2 cut(s)	402, 836
GsuI	CTGGAG	3 cut(s)	51, 63, 657
HaeIII	GGCC	3 cut(s)	29, 56, 251
Hin1II	CATG	8 cut(s)	10, 262, 307, 367, 497, 502, 538, 1070
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	170, 232, 839
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	6 cut(s)	115, 169, 451, 601, 616, 676
Hpy188I	TCNGA	6 cut(s)	219, 370, 738, 758, 848, 1029
Hpy188III	TCNNGA	3 cut(s)	99, 112, 824
Hpy8I	GTNNAC	6 cut(s)	115, 169, 451, 601, 616, 676
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	96, 733, 811
HpyCH4III	ACNGT	4 cut(s)	134, 330, 388, 714
HpyCH4V	TGCA	6 cut(s)	374, 438, 676, 721, 861, 911
HpyF3I	CTNAG	3 cut(s)	755, 781, 1008
Hsp92II	CATG	8 cut(s)	10, 262, 307, 367, 497, 502, 538, 1070
Kzo9I	GATC	4 cut(s)	352, 404, 892, 1061
LmnI	GCTCC	3 cut(s)	143, 530, 638
LweI	GCATC	4 cut(s)	268, 361, 425, 898
MaeI	CTAG	2 cut(s)	402, 836
MaeIII	GTNAC	2 cut(s)	330, 840
MalI	GATC	4 cut(s)	354, 406, 894, 1063
MboI	GATC	4 cut(s)	352, 404, 892, 1061
MboII	GAAGA	9 cut(s)	27, 133, 236, 356, 403, 444, 572, 783, 1016
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	643, 678
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	5 cut(s)	153, 455, 605, 827, 963
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	164, 848
MnlI	CCTC	9 cut(s)	75, 87, 99, 196, 217, 589, 898, 926, 1003
Mox20I	TGGCCA	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	913
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	3 cut(s)	156, 507, 923
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	1007
MspR9I	CCNGG	2 cut(s)	81, 636
Mva1269I	GAATGC	2 cut(s)	911, 948
MvaI	CCWGG	2 cut(s)	81, 636
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	4 cut(s)	352, 404, 892, 1061
NlaIII	CATG	8 cut(s)	10, 262, 307, 367, 497, 502, 538, 1070
NlaIV	GGNNCC	3 cut(s)	75, 526, 640
NmuCI	GTSAC	2 cut(s)	330, 840
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	50
PciI	ACATGT	1 cut(s)	258
PctI	GAATGC	2 cut(s)	911, 948
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	2 cut(s)	499, 804
PfoI	TCCNGGA	1 cut(s)	634
PleI	GAGTC	2 cut(s)	164, 847
PpsI	GAGTC	2 cut(s)	164, 847
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	79, 634
PspGI	CCWGG	2 cut(s)	79, 634
PspN4I	GGNNCC	3 cut(s)	75, 526, 640
PspPI	GGNCC	2 cut(s)	74, 512
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	4 cut(s)	86, 479, 746, 1059
RsaNI	GTAC	4 cut(s)	85, 478, 745, 1058
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	156, 507, 923
Sau3AI	GATC	4 cut(s)	352, 404, 892, 1061
Sau96I	GGNCC	2 cut(s)	74, 512
SchI	GAGTC	2 cut(s)	164, 848
ScrFI	CCNGG	2 cut(s)	81, 636
SduI	GDGCHC	2 cut(s)	643, 678
SfaNI	GCATC	4 cut(s)	268, 361, 425, 898
SinI	GGWCC	2 cut(s)	74, 512
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	153, 455, 605, 827, 963
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	402, 836
StyD4I	CCNGG	2 cut(s)	79, 634
StyI	CCWWGG	4 cut(s)	252, 493, 766, 969
TaaI	ACNGT	4 cut(s)	134, 330, 388, 714
TaqI	TCGA	5 cut(s)	100, 276, 355, 682, 895
TasI	AATT	5 cut(s)	153, 455, 605, 827, 963
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	156, 507, 923
Tru9I	TTAA	3 cut(s)	156, 507, 923
TscAI	CASTG	3 cut(s)	75, 333, 393
TseFI	GTSAC	2 cut(s)	330, 840
Tsp45I	GTSAC	2 cut(s)	330, 840
TspDTI	ATGAA	4 cut(s)	17, 352, 551, 708
TspGWI	ACGGA	2 cut(s)	779, 914
TspRI	CASTG	3 cut(s)	75, 333, 393
Van91I	CCANNNNNTGG	2 cut(s)	499, 804
VneI	GTGCAC	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	74, 512
XapI	RAATTY	3 cut(s)	455, 827, 963
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	2 cut(s)	402, 836
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.