Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Reverse (-)

26019457 .. 26022380

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTGAGCCAAAACGTCGTCGTATCAGACGCCAAGACCGGGATCATAACGGTCTCTACAGTCTCTAACTCCTCTGTCTTTACTCCTACCGCTCAAAAACCACCGACTGCTCCTGGTTACATCTCAGTTTCCAAGAAAAAACTCCTCAAAAACCTTGAAATCAATGGAGCTGATCAAAGTCAAAGACTTAACTCTTGGGTTGACTCCATGAGAGCTTCTTCTCCTACCCATCTCAAATCACTTTCCTCTTTCTCTTCCGAAGAAGAACACAATTCTTGGATCAAACGACATCCATCAGCACTTAACATGTTCGAACGAATCATCGAAGAAGCAAGAGGAAAACAAATCGTCATGTTTCTTGATTATGACGGTACTCTTTCTCCGATCGTGGATGATCCAGACAGAGCTTTCATGACTAGCAAGATGAGAAGAACAGTGAAAAAAATGGCTAAGTGTTTTCCAACTTCCATAGTTACTGGTAGATGCATCGACAAGGTTTATAGCTTTGTGAAGCTAGCAGAACTGTATTATGCTGGAAGCCATGGGATGGATATTAAAGGCCCAACTAAAGGTTTCTCAAGATACAATAAGGATAAACCATCCGTTCTTTACCAACCAGCCGGCGACTTTCTTCCCATGATCGATGAGGTTTATAAACAATTAGTGGAGAAAACCAAATCTACACCAGGAGCCAAAGTGGAGAACAACAAGTTCTGTCTTTCTGTGCACTTCCGTTGTGTTGACGAGAAGAAATGGAGCGAGCTGGCTTCAAAAGTTCGGTCGGTGGTAAAGAACTATCCGACGTTGAAACTGTCTCAAGGTCGAAAGGTTTTTGAAATCCGACCTATAATTAAATGGAACAAAGGCAAGGCTCTTGAGTTTTTGTTAGAGTCACTCGGATTTGAAAACTGTAACGATGTATTTCCAATTTACATTGGTGATGATAAAACCGATGAAGATGCATTTAAGCTACTACGAGGGAGAGGACAAGGCTTTGGTATTCTTGTCTCCAAGTTCCCCAAAGACACCAGTGCGTCGTATTCTTTACAAGACCCACCTGAGGTGATGAATTTCTTGGGACGGTTGGTGGAGTGGAAACAGATGCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

370

Amino Acids

41.76

Weight (kDa)

9.38

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	119 - 352	1.6e-70	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	3 cut(s)	50, 287, 389
AcsI	RAATTY	1 cut(s)	1069
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	4 cut(s)	39, 547, 569, 1060
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	5 cut(s)	158, 771, 808, 836, 905
AjnI	CCWGG	2 cut(s)	112, 685
AluBI	AGCT	7 cut(s)	170, 215, 407, 504, 514, 763, 970
AluI	AGCT	7 cut(s)	170, 215, 407, 504, 514, 763, 970
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	4 cut(s)	58, 67, 819, 1012
Alw44I	GTGCAC	1 cut(s)	725
AlwI	GGATC	3 cut(s)	50, 287, 389
AoxI	GGCC	1 cut(s)	559
ApaLI	GTGCAC	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	1105
ApoI	RAATTY	1 cut(s)	1069
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	16, 950, 1075
AsuII	TTCGAA	1 cut(s)	312
AsuNHI	GCTAGC	1 cut(s)	514
AxyI	CCTNAGG	1 cut(s)	1059
BaeGI	GKGCMC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	729
BccI	CCATC	4 cut(s)	237, 301, 541, 607
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	2 cut(s)	114, 687
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	4 cut(s)	58, 67, 819, 1012
BfaI	CTAG	2 cut(s)	417, 515
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	1106
BlsI	GCNGC	1 cut(s)	1107
Bme1390I	CCNGG	3 cut(s)	40, 114, 687
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	691
BmrFI	CCNGG	3 cut(s)	40, 114, 687
BmsI	GCATC	4 cut(s)	473, 495, 949, 1092
BmtI	GCTAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	3 cut(s)	562, 801, 896
BpuMI	CCSGG	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	4 cut(s)	364, 394, 681, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 547, 569, 1060
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	481, 1029
Bse21I	CCTNAGG	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	114, 687
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	4 cut(s)	289, 397, 552, 599
BseLI	CCNNNNNNNGG	4 cut(s)	39, 547, 569, 1060
BseMII	CTCAG	2 cut(s)	138, 1050
BseNI	ACTGG	2 cut(s)	481, 1029
BseRI	GAGGAG	2 cut(s)	61, 134
BseSI	GKGCMC	1 cut(s)	729
Bsh1285I	CGRYCG	2 cut(s)	387, 782
BshFI	GGCC	1 cut(s)	561
BshVI	ATCGAT	1 cut(s)	642
BsiEI	CGRYCG	2 cut(s)	387, 782
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	39, 621
BslFI	GGGAC	1 cut(s)	1092
BslI	CCNNNNNNNGG	4 cut(s)	39, 547, 569, 1060
BsmAI	GTCTC	4 cut(s)	58, 67, 819, 1012
BsmFI	GGGAC	1 cut(s)	1092
BsnI	GGCC	1 cut(s)	561
Bso31I	GGTCTC	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	2 cut(s)	137, 1051
BspDI	ATCGAT	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	691
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	3 cut(s)	50, 287, 389
BspT104I	TTCGAA	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	481, 1029
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	541
Bst2UI	CCWGG	2 cut(s)	114, 687
Bst4CI	ACNGT	8 cut(s)	52, 61, 371, 436, 525, 813, 911, 1083
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	4 cut(s)	516, 622, 761, 765
BstDEI	CTNAG	3 cut(s)	124, 450, 1059
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	4 cut(s)	289, 397, 552, 599
BstKTI	GATC	6 cut(s)	45, 175, 282, 387, 397, 642
BstMAI	GTCTC	4 cut(s)	58, 67, 819, 1012
BstMBI	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
BstMCI	CGRYCG	2 cut(s)	387, 782
BstNI	CCWGG	2 cut(s)	114, 687
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	38, 112, 685
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	729
Bsu15I	ATCGAT	1 cut(s)	642
Bsu36I	CCTNAGG	1 cut(s)	1059
BsuRI	GGCC	1 cut(s)	561
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	4 cut(s)	289, 397, 552, 599
BtsIMutI	CAGTG	2 cut(s)	441, 1036
Cac8I	GCNNGC	4 cut(s)	516, 622, 761, 765
CciI	TCATGA	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	642
CseI	GACGC	2 cut(s)	38, 1023
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	6 cut(s)	208, 307, 352, 412, 542, 637
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	3 cut(s)	124, 450, 1059
DpnI	GATC	6 cut(s)	44, 174, 281, 386, 396, 641
DpnII	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	1059
EcoRII	CCWGG	2 cut(s)	112, 685
EcoT14I	CCWWGG	1 cut(s)	541
EcoT22I	ATGCAT	2 cut(s)	488, 964
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	6 cut(s)	211, 310, 355, 415, 545, 640
FaqI	GGGAC	1 cut(s)	1092
FatI	CATG	6 cut(s)	207, 306, 351, 411, 541, 636
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	1106
FokI	GGATG	4 cut(s)	276, 404, 559, 586
Fsp4HI	GCNGC	1 cut(s)	1106
FspBI	CTAG	2 cut(s)	417, 515
GluI	GCNGC	1 cut(s)	1106
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	2 cut(s)	39, 621
HgaI	GACGC	2 cut(s)	38, 1023
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	211, 310, 355, 415, 545, 640
HincII	GTYRAC	2 cut(s)	202, 742
HindII	GTYRAC	2 cut(s)	202, 742
HinfI	GANTC	3 cut(s)	203, 318, 890
HpaII	CCGG	2 cut(s)	39, 621
HphI	GGTGA	3 cut(s)	16, 950, 1075
Hpy166II	GTNNAC	3 cut(s)	202, 727, 742
Hpy188I	TCNGA	6 cut(s)	28, 259, 384, 801, 842, 899
Hpy188III	TCNNGA	5 cut(s)	359, 398, 412, 579, 875
Hpy8I	GTNNAC	3 cut(s)	202, 727, 742
Hpy99I	CGWCG	4 cut(s)	20, 23, 805, 1039
HpyCH4III	ACNGT	8 cut(s)	52, 61, 371, 436, 525, 813, 911, 1083
HpyCH4IV	ACGT	2 cut(s)	15, 803
HpyCH4V	TGCA	4 cut(s)	486, 727, 962, 1105
HpyF3I	CTNAG	3 cut(s)	124, 450, 1059
HpySE526I	ACGT	2 cut(s)	15, 803
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	211, 310, 355, 415, 545, 640
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
LmnI	GCTCC	4 cut(s)	115, 167, 689, 756
LweI	GCATC	4 cut(s)	473, 495, 949, 1092
MaeI	CTAG	2 cut(s)	417, 515
MaeII	ACGT	2 cut(s)	15, 803
MaeIII	GTNAC	4 cut(s)	116, 472, 891, 911
MalI	GATC	6 cut(s)	44, 174, 281, 386, 396, 641
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
MboII	GAAGA	9 cut(s)	210, 246, 272, 275, 338, 441, 623, 760, 968
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	5 cut(s)	271, 659, 849, 927, 1069
MlyI	GAGTC	2 cut(s)	197, 899
MmeI	TCCRAC	3 cut(s)	485, 824, 865
MnlI	CCTC	8 cut(s)	82, 155, 256, 329, 640, 971, 977, 1054
Mph1103I	ATGCAT	2 cut(s)	488, 964
MroNI	GCCGGC	1 cut(s)	620
MseI	TTAA	5 cut(s)	189, 303, 555, 852, 966
MspI	CCGG	2 cut(s)	39, 621
MspR9I	CCNGG	3 cut(s)	40, 114, 687
MvaI	CCWGG	2 cut(s)	114, 687
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
NgoMIV	GCCGGC	1 cut(s)	620
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	6 cut(s)	211, 310, 355, 415, 545, 640
NlaIV	GGNNCC	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	891
NsiI	ATGCAT	2 cut(s)	488, 964
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	312
PagI	TCATGA	1 cut(s)	411
PciI	ACATGT	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	1107
Ple19I	CGATCG	1 cut(s)	387
PleI	GAGTC	2 cut(s)	197, 898
PpsI	GAGTC	2 cut(s)	197, 898
PscI	ACATGT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	112, 685
PspGI	CCWGG	2 cut(s)	112, 685
PspN4I	GGNNCC	1 cut(s)	691
PspPI	GGNCC	1 cut(s)	560
PvuI	CGATCG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SaqAI	TTAA	5 cut(s)	189, 303, 555, 852, 966
SatI	GCNGC	1 cut(s)	1106
Sau3AI	GATC	6 cut(s)	42, 172, 279, 384, 394, 639
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	197, 899
ScrFI	CCNGG	3 cut(s)	40, 114, 687
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	4 cut(s)	473, 495, 949, 1092
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	577, 816, 875
SmoI	CTYRAG	3 cut(s)	577, 816, 875
Sse9I	AATT	5 cut(s)	271, 659, 849, 927, 1069
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	417, 515
StyD4I	CCNGG	3 cut(s)	38, 112, 685
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	8 cut(s)	52, 61, 371, 436, 525, 813, 911, 1083
TaiI	ACGT	2 cut(s)	18, 806
TaqI	TCGA	5 cut(s)	312, 324, 489, 642, 823
TaqII	GACCGA	1 cut(s)	768
TasI	AATT	5 cut(s)	271, 659, 849, 927, 1069
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	5 cut(s)	189, 303, 555, 852, 966
Tru9I	TTAA	5 cut(s)	189, 303, 555, 852, 966
TscAI	CASTG	2 cut(s)	441, 1036
TseFI	GTSAC	1 cut(s)	891
TseI	GCWGC	1 cut(s)	1105
Tsp45I	GTSAC	1 cut(s)	891
TspDTI	ATGAA	3 cut(s)	400, 969, 1082
TspGWI	ACGGA	2 cut(s)	592, 722
TspRI	CASTG	2 cut(s)	441, 1036
Van91I	CCANNNNNTGG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	725
XapI	RAATTY	1 cut(s)	1069
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	2 cut(s)	417, 515
Zsp2I	ATGCAT	2 cut(s)	488, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.