Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Reverse (-)

27744737 .. 27747800

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACTAAGCAAAATGTGGTAGTGTCCGATGCTGACTCCCAAATCATGAACATGGCGATATCGGTTGCCGTGTCGAACTCTTCGATTTTCAGTGCGGCGGCGGAGAAGCCTCCGATGGCGCCGGGTGGGTATATATCCATCTCGAGGAAGAGATTGATGAACTTGAAGAACCTTGACATTATTAATGGAGGTGAAAGACTCACCTCTTGGGTGGACTCGATGAAGGCTTCATCTCCCACCCATATTCAGTCTTCCCCTTGCTTGGTGAAAGGCCAGAGTTCTTGGATGCTTCAGCACCCATCAGCCTTAGACACGTTTGACAAAATCATAGAAGTTTCCCAAGGCAAGCAAATTGTCATGTTTCTGGACTATGATGGCACTCTTTCGCCCATAGTCGAAGACCCAGATCGAGCTTTTATGTCCGATTCAATGAGGAAGACCGTGAAACAACTTGCTAGGTGTTTTCCTACTGCAATAGTGAGTGGAAGATGCAGAGACAAGGTGTACAAATTTGTACGATTGGCAGAGTTGTACTATGCTGGTAGCCATGGTATGGACATTAAAGGTCCAGCAAAAGGTTCCAAATACAAGAAAGGTAGCCAAGGTGTTCTTTGCCAACCAGCAAGTGAGTTTCTTCCTATGATTGATGAAGTTTATAAGCTACTGGTTGAGAAGACCAAATCAACTCCTGGAGCAAAAGTTGAGAACAACAAGTTCTGTCTCTCTGTGCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCCTCGCAAGTTAGATCAGTTTTGAAGGAGTACCCACAGCTTAGACTCTCCCAAGGAAGAAAGGTACGTGTGGGATATGGCATCTTTACTATGCTACACATGGTCAATCTTGAAGCTTCATTACAGTGTTTTTTTTTTTTTTTGGGTCAAAACTTAGTGTGTGGTCTGAGTGAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

315

Amino Acids

35.04

Weight (kDa)

9.22

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	121 - 278	1.3e-47	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	3 cut(s)	95, 98, 101
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	5 cut(s)	506, 516, 533, 800, 834
AfiI	CCNNNNNNNGG	4 cut(s)	144, 262, 553, 575
AflIII	ACRYGT	2 cut(s)	312, 835
AgsI	TTSAA	4 cut(s)	166, 429, 793, 881
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	4 cut(s)	413, 661, 808, 884
AluI	AGCT	4 cut(s)	413, 661, 808, 884
Alw26I	GTCTC	2 cut(s)	489, 725
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	271, 768
ApoI	RAATTY	1 cut(s)	509
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	193, 203, 277
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	873, 905
BbsI	GAAGAC	4 cut(s)	243, 405, 443, 680
BccI	CCATC	4 cut(s)	109, 146, 307, 368
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	489, 725
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme1390I	CCNGG	2 cut(s)	123, 690
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	120, 580
BmrFI	CCNGG	2 cut(s)	123, 690
BmsI	GCATC	4 cut(s)	19, 276, 479, 858
BpiI	GAAGAC	4 cut(s)	243, 405, 443, 680
BpmI	CTGGAG	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	836
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	340, 547, 601, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 262, 553, 575
Bse1I	ACTGG	2 cut(s)	669, 771
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	4 cut(s)	340, 547, 601, 820
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	4 cut(s)	144, 262, 553, 575
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	2 cut(s)	669, 771
BshFI	GGCC	2 cut(s)	273, 770
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	4 cut(s)	144, 262, 553, 575
BsmAI	GTCTC	2 cut(s)	489, 725
BsnI	GGCC	2 cut(s)	273, 770
BsoBI	CYCGRG	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	406, 782
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	3 cut(s)	95, 98, 101
BspANI	GGCC	2 cut(s)	273, 770
BspCNI	CTCAG	1 cut(s)	927
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	120, 580
BspT107I	GGYRCC	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	669, 771
BssECI	CCNNGG	4 cut(s)	340, 547, 601, 820
BssMI	GATC	2 cut(s)	406, 782
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	4 cut(s)	340, 547, 601, 820
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	2 cut(s)	442, 894
Bst6I	CTCTTC	2 cut(s)	85, 143
BstACI	GRCGYC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	6, 307, 809, 922, 935
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	409, 785
BstMAI	GTCTC	2 cut(s)	489, 725
BstMBI	GATC	2 cut(s)	406, 782
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	121, 688
BstV2I	GAAGAC	4 cut(s)	243, 405, 443, 680
BsuRI	GGCC	2 cut(s)	273, 770
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	97, 899
Cac8I	GCNNGC	1 cut(s)	347
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	5 cut(s)	505, 515, 532, 799, 833
CviAII	CATG	5 cut(s)	46, 52, 358, 548, 868
CviQI	GTAC	5 cut(s)	505, 515, 532, 799, 833
DdeI	CTNAG	5 cut(s)	6, 307, 809, 922, 935
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	408, 784
DpnII	GATC	2 cut(s)	406, 782
Eam1104I	CTCTTC	2 cut(s)	85, 143
EarI	CTCTTC	2 cut(s)	85, 143
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	4 cut(s)	340, 547, 601, 820
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	688
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	4 cut(s)	340, 547, 601, 820
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	4 cut(s)	340, 547, 601, 820
FaeI	CATG	5 cut(s)	49, 55, 361, 551, 871
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FatI	CATG	5 cut(s)	45, 51, 357, 547, 867
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	96, 99
GsuI	CTGGAG	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	273, 770
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	49, 55, 361, 551, 871
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	5 cut(s)	35, 198, 215, 425, 813
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	193, 203, 277
Hpy166II	GTNNAC	3 cut(s)	214, 505, 764
Hpy188I	TCNGA	4 cut(s)	28, 114, 424, 936
Hpy188III	TCNNGA	4 cut(s)	46, 142, 365, 878
Hpy8I	GTNNAC	3 cut(s)	214, 505, 764
HpyAV	CCTTC	2 cut(s)	217, 787
HpyCH4III	ACNGT	2 cut(s)	442, 894
HpyCH4IV	ACGT	2 cut(s)	314, 835
HpyCH4V	TGCA	3 cut(s)	473, 492, 730
HpyF3I	CTNAG	5 cut(s)	6, 307, 809, 922, 935
HpySE526I	ACGT	2 cut(s)	314, 835
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	49, 55, 361, 551, 871
HspAI	GCGC	1 cut(s)	119
KasI	GGCGCC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	406, 782
LmnI	GCTCC	1 cut(s)	692
LweI	GCATC	4 cut(s)	19, 276, 479, 858
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	2 cut(s)	314, 835
MalI	GATC	2 cut(s)	408, 784
MboI	GATC	2 cut(s)	406, 782
MluCI	AATT	2 cut(s)	351, 509
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	4 cut(s)	29, 192, 209, 807
MnlI	CCTC	6 cut(s)	120, 138, 182, 214, 426, 781
MseI	TTAA	2 cut(s)	183, 561
MslI	CAYNNNNRTG	2 cut(s)	50, 892
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	123, 690
MvaI	CCWGG	1 cut(s)	690
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	406, 782
NlaIII	CATG	5 cut(s)	49, 55, 361, 551, 871
NlaIV	GGNNCC	2 cut(s)	120, 580
PaeR7I	CTCGAG	1 cut(s)	142
PagI	TCATGA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	97, 100
PleI	GAGTC	4 cut(s)	29, 192, 209, 807
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	4 cut(s)	29, 192, 209, 807
Ppu21I	YACGTR	1 cut(s)	836
PshBI	ATTAAT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	120, 580
PspPI	GGNCC	1 cut(s)	566
RsaI	GTAC	5 cut(s)	506, 516, 533, 800, 834
RsaNI	GTAC	5 cut(s)	505, 515, 532, 799, 833
RseI	CAYNNNNRTG	2 cut(s)	50, 892
SaqAI	TTAA	2 cut(s)	183, 561
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	2 cut(s)	406, 782
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	4 cut(s)	29, 192, 209, 807
ScrFI	CCNGG	2 cut(s)	123, 690
SfaNI	GCATC	4 cut(s)	19, 276, 479, 858
SfoI	GGCGCC	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	50, 892
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	351, 509
SsiI	CCGC	3 cut(s)	95, 98, 101
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	121, 688
StyI	CCWWGG	4 cut(s)	340, 547, 601, 820
TaaI	ACNGT	2 cut(s)	442, 894
TaiI	ACGT	2 cut(s)	317, 838
TaqI	TCGA	6 cut(s)	74, 83, 143, 218, 396, 409
TasI	AATT	2 cut(s)	351, 509
TatI	WGTACW	2 cut(s)	504, 531
TauI	GCSGC	2 cut(s)	98, 101
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	183, 561
Tru9I	TTAA	2 cut(s)	183, 561
TscAI	CASTG	2 cut(s)	97, 899
TspDTI	ATGAA	7 cut(s)	62, 173, 219, 236, 663, 762, 876
TspRI	CASTG	2 cut(s)	97, 899
Van91I	CCANNNNNTGG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	566
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	142
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.