Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Forward (+)

18929711 .. 18932438

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G182400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACGAAGCAGAATGTGGTAGTTTCCGATGCTGAAGCAGAAATCATGAACATGGCTATATCGGTGGCCGTTTCGAACTCTTCCATTTTCACGGCGGTGGCCGAAAAGCCTCCCGTGGGCCCGCCTGGGTACATCTCCATTTCCAGGAAGAGGTTCTTGAACTTGAAGAATCTTGACAGCATCAATGGAGCTGAAAGAATCAACTCTTGGGTGGACTCAATGAGAGCTTCTTCTCCCACCCACTTAAAGTCCTCATCTTTTTTGAAAGAGGACCAGAGCTCATGGATTCTTCAGCACCCATCAGCCTTGGACATGTTTGAGCAGATTATTGATGCTTCCAAAGGCAAGCAAATCGTCATGTTCATGGACTACGATGGCACACTATCCCCCATAGTTGAAGACCCAGATCGAGCTTTCATGTCTGATGCAATGAGAAAGACAGTGAAGAAAGTGGCTAGATGTTTTCCCACTGCCATAGTGAGTGGAAGATGTAGAGATAAGGTGTACAAATTTGTAAAGTTGGCAGAGTTGTACTATGCTGGTAGCCATGGTATGGACATTAAAGGTCCAGCCAAAGGTTCGAAATACAAGACAGGCAGTCAAGGTGTTCTTTGCCAACCAGCAAGTGAATTTCTCCCAATGATTGATGAGGTTTACAAACTACTTGTTGAAAAGACGAAATCAACTCCTGGAGCCAAAGTGGAGAACAACAAGTTCTGCCTCTCTGTTCATTTCCGTTGCGTTGATGAAAAGAAATGGACTGAACTGGCCTTGCAAGTTAGATCCGTTTTGAAGGACTACCCAAAGCTCAGACTTACCCAAGGAAGAAAGGTGCTGGAAATCCGTCCTACCATCAAATGGGACAAAGGCAAGGCTCTTGAATTTCTGCTAGAGTCACTGGGATATGCCAACTGCACCGATGTCTTTCCTGTTTATATCGGAGATGATCGAACGGATGAAGATGCATTCAAGATATTAAGGGAAAGAGGACAAGGTTTTGGCATTCTCGTCTCAAAAACTCCAAAGGAAACCACCGCGACGTATTCTTTACAGGAACCAGCTGAGGTTATGGACTTTCTTCAGCGTCTGGTTGAGTGGAAACGACAATCAATTCGGGCCCATTCCATGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

378

Amino Acids

42.42

Weight (kDa)

9.06

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	553, 858
AccII	CGCG	1 cut(s)	1037
AciI	CCGC	3 cut(s)	95, 122, 1035
AclWI	GGATC	1 cut(s)	777
AcoI	YGGCCR	2 cut(s)	66, 99
AcsI	RAATTY	3 cut(s)	509, 629, 881
AcuI	CTGAAG	3 cut(s)	54, 275, 1064
AfaI	GTAC	3 cut(s)	131, 506, 533
AfiI	CCNNNNNNNGG	6 cut(s)	116, 144, 150, 553, 575, 858
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	8 cut(s)	160, 166, 265, 398, 671, 793, 881, 970
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	3 cut(s)	124, 143, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	6 cut(s)	191, 227, 279, 413, 808, 1061
AluI	AGCT	6 cut(s)	191, 227, 279, 413, 808, 1061
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	1015
AlwI	GGATC	1 cut(s)	777
AlwNI	CAGNNNCTG	1 cut(s)	1087
AoxI	GGCC	5 cut(s)	66, 99, 118, 768, 1116
ApaI	GGGCCC	2 cut(s)	122, 1120
ApoI	RAATTY	3 cut(s)	509, 629, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	1095, 1127
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	6 cut(s)	118, 119, 271, 566, 1116, 1117
AsuII	TTCGAA	2 cut(s)	74, 581
AvaII	GGWCC	2 cut(s)	271, 566
BaeGI	GKGCMC	2 cut(s)	122, 1120
BanII	GRGCYC	3 cut(s)	122, 281, 1120
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	1062
BccI	CCATC	3 cut(s)	307, 368, 860
BceAI	ACGGC	2 cut(s)	53, 108
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	3 cut(s)	126, 145, 690
BcoDI	GTCTC	1 cut(s)	1015
BfaI	CTAG	2 cut(s)	456, 890
Bme1390I	CCNGG	3 cut(s)	126, 145, 690
Bme18I	GGWCC	2 cut(s)	271, 566
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmgT120I	GGNCC	6 cut(s)	118, 119, 271, 566, 1116, 1117
BmiI	GGNNCC	4 cut(s)	120, 694, 1056, 1118
BmrFI	CCNGG	3 cut(s)	126, 145, 690
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	5 cut(s)	19, 189, 322, 415, 952
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	1062
Bpu14I	TTCGAA	2 cut(s)	74, 581
BsaJI	CCNNGG	5 cut(s)	114, 125, 306, 547, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	6 cut(s)	116, 144, 150, 553, 575, 858
Bse1I	ACTGG	2 cut(s)	771, 903
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	126, 145, 690
BseDI	CCNNGG	5 cut(s)	114, 125, 306, 547, 820
BseGI	GGATG	1 cut(s)	961
BseLI	CCNNNNNNNGG	6 cut(s)	116, 144, 150, 553, 575, 858
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	823, 1053
BseNI	ACTGG	2 cut(s)	771, 903
BseSI	GKGCMC	2 cut(s)	122, 1120
BsgI	GTGCAG	1 cut(s)	898
Bsh1236I	CGCG	1 cut(s)	1037
BshFI	GGCC	5 cut(s)	68, 101, 120, 770, 1118
BsiHKAI	GWGCWC	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	6 cut(s)	116, 144, 150, 553, 575, 858
BsmAI	GTCTC	1 cut(s)	1015
BsmBI	CGTCTC	1 cut(s)	1015
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	2 cut(s)	965, 1002
BsnI	GGCC	5 cut(s)	68, 101, 120, 770, 1118
Bsp119I	TTCGAA	2 cut(s)	74, 581
Bsp120I	GGGCCC	2 cut(s)	118, 1116
Bsp1286I	GDGCHC	3 cut(s)	122, 281, 1120
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	406, 782, 946
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	3 cut(s)	95, 122, 1035
BspANI	GGCC	5 cut(s)	68, 101, 120, 770, 1118
BspCNI	CTCAG	2 cut(s)	822, 1054
BspFNI	CGCG	1 cut(s)	1037
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	120, 694, 1056, 1118
BspPI	GGATC	1 cut(s)	777
BspT104I	TTCGAA	2 cut(s)	74, 581
BsrDI	GCAATG	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	771, 903
BssECI	CCNNGG	5 cut(s)	114, 125, 306, 547, 820
BssMI	GATC	3 cut(s)	406, 782, 946
BssT1I	CCWWGG	3 cut(s)	306, 547, 820
Bst2UI	CCWGG	3 cut(s)	126, 145, 690
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	2 cut(s)	85, 143
BstAUI	TGTACA	1 cut(s)	504
BstBI	TTCGAA	2 cut(s)	74, 581
BstC8I	GCNNGC	2 cut(s)	122, 347
BstDEI	CTNAG	2 cut(s)	809, 1062
BstDSI	CCRYGG	2 cut(s)	114, 547
BstF5I	GGATG	1 cut(s)	961
BstFNI	CGCG	1 cut(s)	1037
BstKTI	GATC	3 cut(s)	409, 785, 949
BstMAI	GTCTC	1 cut(s)	1015
BstMBI	GATC	3 cut(s)	406, 782, 946
BstNI	CCWGG	3 cut(s)	126, 145, 690
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	124, 143, 688
BstSLI	GKGCMC	2 cut(s)	122, 1120
BstUI	CGCG	1 cut(s)	1037
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BsuRI	GGCC	5 cut(s)	68, 101, 120, 770, 1118
BtgI	CCRYGG	2 cut(s)	114, 547
BtsCI	GGATG	1 cut(s)	961
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	3 cut(s)	447, 468, 896
Cac8I	GCNNGC	2 cut(s)	122, 347
CaiI	CAGNNNCTG	1 cut(s)	1087
CciI	TCATGA	1 cut(s)	45
Cfr13I	GGNCC	6 cut(s)	118, 119, 271, 566, 1116, 1117
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	3 cut(s)	130, 505, 532
CviAII	CATG	9 cut(s)	46, 52, 282, 313, 358, 364, 418, 548, 1126
CviQI	GTAC	3 cut(s)	130, 505, 532
DdeI	CTNAG	2 cut(s)	809, 1062
DpnI	GATC	3 cut(s)	408, 784, 948
DpnII	GATC	3 cut(s)	406, 782, 946
DriI	GACNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	2 cut(s)	66, 99
Eam1104I	CTCTTC	2 cut(s)	85, 143
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EarI	CTCTTC	2 cut(s)	85, 143
Ecl136II	GAGCTC	1 cut(s)	279
Eco130I	CCWWGG	3 cut(s)	306, 547, 820
Eco24I	GRGCYC	3 cut(s)	122, 281, 1120
Eco47I	GGWCC	2 cut(s)	271, 566
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	3 cut(s)	54, 275, 1064
EcoICRI	GAGCTC	1 cut(s)	279
EcoRII	CCWGG	3 cut(s)	124, 143, 688
EcoT14I	CCWWGG	3 cut(s)	306, 547, 820
EcoT22I	ATGCAT	1 cut(s)	967
EcoT38I	GRGCYC	3 cut(s)	122, 281, 1120
ErhI	CCWWGG	3 cut(s)	306, 547, 820
Esp3I	CGTCTC	1 cut(s)	1015
FaeI	CATG	9 cut(s)	49, 55, 285, 316, 361, 367, 421, 551, 1129
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 594, 626
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	9 cut(s)	45, 51, 281, 312, 357, 363, 417, 547, 1125
FauI	CCCGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	3 cut(s)	122, 281, 1120
FspBI	CTAG	2 cut(s)	456, 890
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	5 cut(s)	68, 101, 120, 770, 1118
HgaI	GACGC	1 cut(s)	1073
Hin1II	CATG	9 cut(s)	49, 55, 285, 316, 361, 367, 421, 551, 1129
HinfI	GANTC	5 cut(s)	169, 198, 215, 286, 893
Hpy166II	GTNNAC	3 cut(s)	214, 505, 655
Hpy188I	TCNGA	4 cut(s)	28, 424, 812, 941
Hpy188III	TCNNGA	5 cut(s)	46, 157, 173, 878, 970
Hpy8I	GTNNAC	3 cut(s)	214, 505, 655
Hpy99I	CGWCG	1 cut(s)	1042
HpyAV	CCTTC	1 cut(s)	787
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	1040
HpyCH4V	TGCA	4 cut(s)	428, 775, 915, 965
HpyF3I	CTNAG	2 cut(s)	809, 1062
HpySE526I	ACGT	1 cut(s)	1040
Hsp92II	CATG	9 cut(s)	49, 55, 285, 316, 361, 367, 421, 551, 1129
Kzo9I	GATC	3 cut(s)	406, 782, 946
LmnI	GCTCC	2 cut(s)	188, 692
LweI	GCATC	5 cut(s)	19, 189, 322, 415, 952
MaeI	CTAG	2 cut(s)	456, 890
MaeII	ACGT	1 cut(s)	1040
MaeIII	GTNAC	1 cut(s)	894
MalI	GATC	3 cut(s)	408, 784, 948
MboI	GATC	3 cut(s)	406, 782, 946
MflI	RGATCY	1 cut(s)	782
MhlI	GDGCHC	3 cut(s)	122, 281, 1120
MluCI	AATT	4 cut(s)	509, 629, 881, 1110
MlyI	GAGTC	2 cut(s)	209, 902
MnlI	CCTC	8 cut(s)	120, 144, 262, 262, 643, 731, 980, 1057
Mph1103I	ATGCAT	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	3 cut(s)	245, 561, 977
MslI	CAYNNNNRTG	3 cut(s)	50, 95, 362
MspA1I	CMGCKG	1 cut(s)	1061
MspR9I	CCNGG	3 cut(s)	126, 145, 690
Mva1269I	GAATGC	2 cut(s)	965, 1002
MvaI	CCWGG	3 cut(s)	126, 145, 690
MvnI	CGCG	1 cut(s)	1037
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	406, 782, 946
NlaIII	CATG	9 cut(s)	49, 55, 285, 316, 361, 367, 421, 551, 1129
NlaIV	GGNNCC	4 cut(s)	120, 694, 1056, 1118
NmuCI	GTSAC	1 cut(s)	894
NsiI	ATGCAT	1 cut(s)	967
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	2 cut(s)	74, 581
OliI	CACNNNNGTG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	45
PciI	ACATGT	1 cut(s)	312
PctI	GAATGC	2 cut(s)	965, 1002
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	169, 198, 286
PflMI	CCANNNNNTGG	2 cut(s)	553, 858
PfoI	TCCNGGA	2 cut(s)	143, 688
PleI	GAGTC	2 cut(s)	209, 901
PpsI	GAGTC	2 cut(s)	209, 901
PscI	ACATGT	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	281
Psp6I	CCWGG	3 cut(s)	124, 143, 688
PspGI	CCWGG	3 cut(s)	124, 143, 688
PspN4I	GGNNCC	4 cut(s)	120, 694, 1056, 1118
PspOMI	GGGCCC	2 cut(s)	118, 1116
PspPI	GGNCC	6 cut(s)	118, 119, 271, 566, 1116, 1117
PstNI	CAGNNNCTG	1 cut(s)	1087
PsuI	RGATCY	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	3 cut(s)	131, 506, 533
RsaNI	GTAC	3 cut(s)	130, 505, 532
RseI	CAYNNNNRTG	3 cut(s)	50, 95, 362
SacI	GAGCTC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	245, 561, 977
Sau3AI	GATC	3 cut(s)	406, 782, 946
Sau96I	GGNCC	6 cut(s)	118, 119, 271, 566, 1116, 1117
SchI	GAGTC	2 cut(s)	209, 902
ScrFI	CCNGG	3 cut(s)	126, 145, 690
SduI	GDGCHC	3 cut(s)	122, 281, 1120
SfaNI	GCATC	5 cut(s)	19, 189, 322, 415, 952
SfuI	TTCGAA	2 cut(s)	74, 581
SinI	GGWCC	2 cut(s)	271, 566
SmiMI	CAYNNNNRTG	3 cut(s)	50, 95, 362
Sse9I	AATT	4 cut(s)	509, 629, 881, 1110
SsiI	CCGC	3 cut(s)	95, 122, 1035
SspMI	CTAG	2 cut(s)	456, 890
SstI	GAGCTC	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	124, 143, 688
StyI	CCWWGG	3 cut(s)	306, 547, 820
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	1043
TaqI	TCGA	4 cut(s)	74, 409, 581, 949
TasI	AATT	4 cut(s)	509, 629, 881, 1110
TatI	WGTACW	2 cut(s)	504, 531
TfiI	GAWTC	3 cut(s)	169, 198, 286
Tru1I	TTAA	3 cut(s)	245, 561, 977
Tru9I	TTAA	3 cut(s)	245, 561, 977
TscAI	CASTG	3 cut(s)	447, 475, 903
TseFI	GTSAC	1 cut(s)	894
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	6 cut(s)	62, 352, 406, 719, 762, 972
TspGWI	ACGGA	4 cut(s)	725, 775, 833, 968
TspRI	CASTG	3 cut(s)	447, 475, 903
Van91I	CCANNNNNTGG	2 cut(s)	553, 858
VpaK11BI	GGWCC	2 cut(s)	271, 566
XapI	RAATTY	3 cut(s)	509, 629, 881
XceI	RCATGY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	456, 890
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.